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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 463 |
| Acc36I | ACCTGC | 1 cut(s) | 463 |
| AccI | GTMKAC | 1 cut(s) | 331 |
| AciI | CCGC | 2 cut(s) | 140, 152 |
| AclWI | GGATC | 2 cut(s) | 834, 930 |
| AcsI | RAATTY | 1 cut(s) | 680 |
| AfaI | GTAC | 1 cut(s) | 162 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 296, 509, 578 |
| AgsI | TTSAA | 4 cut(s) | 80, 133, 645, 697 |
| AhlI | ACTAGT | 1 cut(s) | 326 |
| AjnI | CCWGG | 2 cut(s) | 543, 831 |
| AluBI | AGCT | 4 cut(s) | 8, 147, 433, 701 |
| AluI | AGCT | 4 cut(s) | 8, 147, 433, 701 |
| Alw21I | GWGCWC | 1 cut(s) | 10 |
| AlwI | GGATC | 2 cut(s) | 834, 930 |
| ApoI | RAATTY | 1 cut(s) | 680 |
| AspS9I | GGNCC | 2 cut(s) | 36, 836 |
| AsuHPI | GGTGA | 5 cut(s) | 105, 311, 806, 821, 830 |
| AvaII | GGWCC | 2 cut(s) | 36, 836 |
| AxyI | CCTNAGG | 2 cut(s) | 504, 762 |
| BanII | GRGCYC | 1 cut(s) | 10 |
| BbsI | GAAGAC | 1 cut(s) | 323 |
| Bbv12I | GWGCWC | 1 cut(s) | 10 |
| BbvCI | CCTCAGC | 1 cut(s) | 249 |
| BccI | CCATC | 2 cut(s) | 190, 785 |
| BceAI | ACGGC | 1 cut(s) | 204 |
| BciT130I | CCWGG | 2 cut(s) | 545, 833 |
| BcuI | ACTAGT | 1 cut(s) | 326 |
| BfaI | CTAG | 4 cut(s) | 327, 624, 633, 650 |
| BfuAI | ACCTGC | 1 cut(s) | 463 |
| BisI | GCNGC | 1 cut(s) | 153 |
| BlpI | GCTNAGC | 1 cut(s) | 143 |
| BlsI | GCNGC | 1 cut(s) | 154 |
| Bme1390I | CCNGG | 2 cut(s) | 545, 833 |
| Bme18I | GGWCC | 2 cut(s) | 36, 836 |
| BmgT120I | GGNCC | 2 cut(s) | 36, 836 |
| BmiI | GGNNCC | 2 cut(s) | 38, 837 |
| BmrFI | CCNGG | 2 cut(s) | 545, 833 |
| BmrI | ACTGGG | 1 cut(s) | 678 |
| BmsI | GCATC | 4 cut(s) | 229, 547, 727, 871 |
| BmuI | ACTGGG | 1 cut(s) | 678 |
| BpiI | GAAGAC | 1 cut(s) | 323 |
| Bpu10I | CCTNAGC | 1 cut(s) | 249 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 143 |
| BsaJI | CCNNGG | 1 cut(s) | 832 |
| BsaWI | WCCGGW | 1 cut(s) | 115 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 296, 509, 578 |
| Bse1I | ACTGG | 1 cut(s) | 673 |
| Bse21I | CCTNAGG | 2 cut(s) | 504, 762 |
| Bse3DI | GCAATG | 1 cut(s) | 567 |
| BseBI | CCWGG | 2 cut(s) | 545, 833 |
| BseDI | CCNNGG | 1 cut(s) | 832 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 296, 509, 578 |
| BseMI | GCAATG | 1 cut(s) | 567 |
| BseMII | CTCAG | 8 cut(s) | 134, 178, 240, 333, 480, 732, 753, 923 |
| BseNI | ACTGG | 1 cut(s) | 673 |
| BseYI | CCCAGC | 1 cut(s) | 211 |
| BsgI | GTGCAG | 1 cut(s) | 84 |
| BsiHKAI | GWGCWC | 1 cut(s) | 10 |
| BsiSI | CCGG | 1 cut(s) | 116 |
| BslFI | GGGAC | 2 cut(s) | 109, 273 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 296, 509, 578 |
| BsmFI | GGGAC | 2 cut(s) | 109, 273 |
| BsmI | GAATGC | 1 cut(s) | 550 |
| Bsp1286I | GDGCHC | 1 cut(s) | 10 |
| Bsp143I | GATC | 4 cut(s) | 66, 171, 826, 922 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 143 |
| BspACI | CCGC | 2 cut(s) | 140, 152 |
| BspCNI | CTCAG | 8 cut(s) | 135, 177, 241, 334, 481, 733, 754, 922 |
| BspLI | GGNNCC | 2 cut(s) | 38, 837 |
| BspMI | ACCTGC | 1 cut(s) | 463 |
| BspPI | GGATC | 2 cut(s) | 834, 930 |
| BsrDI | GCAATG | 1 cut(s) | 567 |
| BsrI | ACTGG | 1 cut(s) | 673 |
| BssECI | CCNNGG | 1 cut(s) | 832 |
| BssMI | GATC | 4 cut(s) | 66, 171, 826, 922 |
| BssNAI | GTATAC | 1 cut(s) | 332 |
| Bst1107I | GTATAC | 1 cut(s) | 332 |
| Bst2UI | CCWGG | 2 cut(s) | 545, 833 |
| Bst4CI | ACNGT | 1 cut(s) | 800 |
| BstC8I | GCNNGC | 2 cut(s) | 618, 864 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 576 |
| BstKTI | GATC | 4 cut(s) | 69, 174, 829, 925 |
| BstMBI | GATC | 4 cut(s) | 66, 171, 826, 922 |
| BstNI | CCWGG | 2 cut(s) | 545, 833 |
| BstSCI | CCNGG | 2 cut(s) | 543, 831 |
| BstV2I | GAAGAC | 1 cut(s) | 323 |
| BstX2I | RGATCY | 1 cut(s) | 922 |
| BstYI | RGATCY | 1 cut(s) | 922 |
| BstZ17I | GTATAC | 1 cut(s) | 332 |
| Bsu36I | CCTNAGG | 2 cut(s) | 504, 762 |
| BtgZI | GCGATG | 1 cut(s) | 75 |
| BtsI | GCAGTG | 1 cut(s) | 273 |
| BtsIMutI | CAGTG | 2 cut(s) | 273, 423 |
| BveI | ACCTGC | 1 cut(s) | 463 |
| Cac8I | GCNNGC | 2 cut(s) | 618, 864 |
| Cfr13I | GGNCC | 2 cut(s) | 36, 836 |
| Csp6I | GTAC | 1 cut(s) | 161 |
| CviQI | GTAC | 1 cut(s) | 161 |
| DpnI | GATC | 4 cut(s) | 68, 173, 828, 924 |
| DpnII | GATC | 4 cut(s) | 66, 171, 826, 922 |
| DraI | TTTAAA | 1 cut(s) | 774 |
| Ecl136II | GAGCTC | 1 cut(s) | 8 |
| Eco24I | GRGCYC | 1 cut(s) | 10 |
| Eco47I | GGWCC | 2 cut(s) | 36, 836 |
| Eco53kI | GAGCTC | 1 cut(s) | 8 |
| Eco81I | CCTNAGG | 2 cut(s) | 504, 762 |
| EcoICRI | GAGCTC | 1 cut(s) | 8 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 576 |
| EcoO109I | RGGNCCY | 1 cut(s) | 836 |
| EcoRII | CCWGG | 2 cut(s) | 543, 831 |
| EcoT38I | GRGCYC | 1 cut(s) | 10 |
| FaqI | GGGAC | 2 cut(s) | 109, 273 |
| FblI | GTMKAC | 1 cut(s) | 331 |
| Fnu4HI | GCNGC | 1 cut(s) | 153 |
| FriOI | GRGCYC | 1 cut(s) | 10 |
| Fsp4HI | GCNGC | 1 cut(s) | 153 |
| FspBI | CTAG | 4 cut(s) | 327, 624, 633, 650 |
| GluI | GCNGC | 1 cut(s) | 153 |
| GsaI | CCCAGC | 1 cut(s) | 215 |
| HapII | CCGG | 1 cut(s) | 116 |
| HindIII | AAGCTT | 1 cut(s) | 431 |
| HinfI | GANTC | 6 cut(s) | 50, 86, 110, 119, 337, 845 |
| HpaII | CCGG | 1 cut(s) | 116 |
| HphI | GGTGA | 5 cut(s) | 105, 311, 806, 821, 830 |
| Hpy166II | GTNNAC | 3 cut(s) | 271, 332, 675 |
| Hpy188I | TCNGA | 7 cut(s) | 71, 171, 262, 445, 556, 912, 927 |
| Hpy188III | TCNNGA | 3 cut(s) | 341, 401, 936 |
| Hpy8I | GTNNAC | 3 cut(s) | 271, 332, 675 |
| HpyAV | CCTTC | 3 cut(s) | 520, 647, 907 |
| HpyCH4III | ACNGT | 1 cut(s) | 800 |
| HpyCH4V | TGCA | 7 cut(s) | 101, 242, 478, 560, 595, 862, 892 |
| Kzo9I | GATC | 4 cut(s) | 66, 171, 826, 922 |
| LmnI | GCTCC | 4 cut(s) | 5, 415, 547, 625 |
| LweI | GCATC | 4 cut(s) | 229, 547, 727, 871 |
| MaeI | CTAG | 4 cut(s) | 327, 624, 633, 650 |
| MaeIII | GTNAC | 4 cut(s) | 124, 310, 794, 818 |
| MalI | GATC | 4 cut(s) | 68, 173, 828, 924 |
| MboI | GATC | 4 cut(s) | 66, 171, 826, 922 |
| MboII | GAAGA | 5 cut(s) | 230, 328, 472, 779, 794 |
| MflI | RGATCY | 1 cut(s) | 922 |
| MhlI | GDGCHC | 1 cut(s) | 10 |
| MluCI | AATT | 4 cut(s) | 304, 383, 453, 680 |
| MlyI | GAGTC | 2 cut(s) | 44, 839 |
| MseI | TTAA | 3 cut(s) | 663, 773, 810 |
| MslI | CAYNNNNRTG | 1 cut(s) | 555 |
| MspA1I | CMGCKG | 1 cut(s) | 142 |
| MspI | CCGG | 1 cut(s) | 116 |
| MspR9I | CCNGG | 2 cut(s) | 545, 833 |
| Mva1269I | GAATGC | 1 cut(s) | 550 |
| MvaI | CCWGG | 2 cut(s) | 545, 833 |
| NdeII | GATC | 4 cut(s) | 66, 171, 826, 922 |
| NlaIV | GGNNCC | 2 cut(s) | 38, 837 |
| NmuCI | GTSAC | 3 cut(s) | 124, 794, 818 |
| PaqCI | CACCTGC | 1 cut(s) | 463 |
| PctI | GAATGC | 1 cut(s) | 550 |
| PfeI | GAWTC | 4 cut(s) | 86, 110, 119, 337 |
| PkrI | GCNGC | 1 cut(s) | 154 |
| PleI | GAGTC | 2 cut(s) | 44, 839 |
| PpsI | GAGTC | 2 cut(s) | 44, 839 |
| PpuMI | RGGWCCY | 1 cut(s) | 836 |
| Psp124BI | GAGCTC | 1 cut(s) | 10 |
| Psp5II | RGGWCCY | 1 cut(s) | 836 |
| Psp6I | CCWGG | 2 cut(s) | 543, 831 |
| PspFI | CCCAGC | 1 cut(s) | 211 |
| PspGI | CCWGG | 2 cut(s) | 543, 831 |
| PspN4I | GGNNCC | 2 cut(s) | 38, 837 |
| PspPI | GGNCC | 2 cut(s) | 36, 836 |
| PspPPI | RGGWCCY | 1 cut(s) | 836 |
| PsuI | RGATCY | 1 cut(s) | 922 |
| RsaI | GTAC | 1 cut(s) | 162 |
| RsaNI | GTAC | 1 cut(s) | 161 |
| RseI | CAYNNNNRTG | 1 cut(s) | 555 |
| SacI | GAGCTC | 1 cut(s) | 10 |
| SaqAI | TTAA | 3 cut(s) | 663, 773, 810 |
| SatI | GCNGC | 1 cut(s) | 153 |
| Sau3AI | GATC | 4 cut(s) | 66, 171, 826, 922 |
| Sau96I | GGNCC | 2 cut(s) | 36, 836 |
| SchI | GAGTC | 2 cut(s) | 44, 839 |
| ScrFI | CCNGG | 2 cut(s) | 545, 833 |
| SduI | GDGCHC | 1 cut(s) | 10 |
| SfaNI | GCATC | 4 cut(s) | 229, 547, 727, 871 |
| SinI | GGWCC | 2 cut(s) | 36, 836 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 555 |
| SpeI | ACTAGT | 1 cut(s) | 326 |
| Sse9I | AATT | 4 cut(s) | 304, 383, 453, 680 |
| SsiI | CCGC | 2 cut(s) | 140, 152 |
| SspMI | CTAG | 4 cut(s) | 327, 624, 633, 650 |
| SstI | GAGCTC | 1 cut(s) | 10 |
| StyD4I | CCNGG | 2 cut(s) | 543, 831 |
| TaaI | ACNGT | 1 cut(s) | 800 |
| TaqI | TCGA | 2 cut(s) | 53, 84 |
| TaqII | GACCGA | 1 cut(s) | 335 |
| TasI | AATT | 4 cut(s) | 304, 383, 453, 680 |
| TatI | WGTACW | 1 cut(s) | 160 |
| TauI | GCSGC | 1 cut(s) | 155 |
| TfiI | GAWTC | 4 cut(s) | 86, 110, 119, 337 |
| Tru1I | TTAA | 3 cut(s) | 663, 773, 810 |
| Tru9I | TTAA | 3 cut(s) | 663, 773, 810 |
| TscAI | CASTG | 2 cut(s) | 273, 430 |
| TseFI | GTSAC | 3 cut(s) | 124, 794, 818 |
| Tsp45I | GTSAC | 3 cut(s) | 124, 794, 818 |
| TspGWI | ACGGA | 3 cut(s) | 49, 112, 692 |
| TspRI | CASTG | 2 cut(s) | 273, 430 |
| VpaK11BI | GGWCC | 2 cut(s) | 36, 836 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 576 |
| XapI | RAATTY | 1 cut(s) | 680 |
| XmiI | GTMKAC | 1 cut(s) | 331 |
| XspI | CTAG | 4 cut(s) | 327, 624, 633, 650 |