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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 9 |
| AclWI | GGATC | 1 cut(s) | 118 |
| AcsI | RAATTY | 3 cut(s) | 176, 344, 376 |
| AfaI | GTAC | 1 cut(s) | 373 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 348 |
| AgsI | TTSAA | 3 cut(s) | 26, 181, 408 |
| AluBI | AGCT | 3 cut(s) | 140, 257, 369 |
| AluI | AGCT | 3 cut(s) | 140, 257, 369 |
| Alw26I | GTCTC | 1 cut(s) | 154 |
| AlwI | GGATC | 1 cut(s) | 118 |
| ApoI | RAATTY | 3 cut(s) | 176, 344, 376 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 368, 400 |
| AseI | ATTAAT | 1 cut(s) | 273 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 193 |
| AspLEI | GCGC | 1 cut(s) | 9 |
| AsuII | TTCGAA | 1 cut(s) | 59 |
| BccI | CCATC | 3 cut(s) | 308, 334, 410 |
| BclI | TGATCA | 1 cut(s) | 42 |
| BcoDI | GTCTC | 1 cut(s) | 154 |
| BfaI | CTAG | 2 cut(s) | 153, 427 |
| BlpI | GCTNAGC | 1 cut(s) | 258 |
| BmiI | GGNNCC | 1 cut(s) | 421 |
| BpmI | CTGGAG | 1 cut(s) | 273 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 258 |
| Bpu14I | TTCGAA | 1 cut(s) | 59 |
| BsaBI | GATNNNNATC | 1 cut(s) | 318 |
| BsaI | GGTCTC | 1 cut(s) | 154 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 348 |
| Bse1I | ACTGG | 1 cut(s) | 290 |
| Bse8I | GATNNNNATC | 1 cut(s) | 318 |
| BseGI | GGATG | 1 cut(s) | 319 |
| BseJI | GATNNNNATC | 1 cut(s) | 318 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 348 |
| BseMII | CTCAG | 2 cut(s) | 272, 354 |
| BseNI | ACTGG | 1 cut(s) | 290 |
| Bsh1236I | CGCG | 1 cut(s) | 9 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 348 |
| BsmAI | GTCTC | 1 cut(s) | 154 |
| Bso31I | GGTCTC | 1 cut(s) | 154 |
| Bsp119I | TTCGAA | 1 cut(s) | 59 |
| Bsp1407I | TGTACA | 1 cut(s) | 371 |
| Bsp143I | GATC | 2 cut(s) | 42, 110 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 258 |
| BspCNI | CTCAG | 2 cut(s) | 271, 355 |
| BspFNI | CGCG | 1 cut(s) | 9 |
| BspLI | GGNNCC | 1 cut(s) | 421 |
| BspPI | GGATC | 1 cut(s) | 118 |
| BspT104I | TTCGAA | 1 cut(s) | 59 |
| BspTNI | GGTCTC | 1 cut(s) | 154 |
| BsrGI | TGTACA | 1 cut(s) | 371 |
| BsrI | ACTGG | 1 cut(s) | 290 |
| BssMI | GATC | 2 cut(s) | 42, 110 |
| BstAUI | TGTACA | 1 cut(s) | 371 |
| BstBI | TTCGAA | 1 cut(s) | 59 |
| BstC8I | GCNNGC | 1 cut(s) | 66 |
| BstDEI | CTNAG | 2 cut(s) | 258, 363 |
| BstF5I | GGATG | 1 cut(s) | 319 |
| BstFNI | CGCG | 1 cut(s) | 9 |
| BstHHI | GCGC | 1 cut(s) | 9 |
| BstKTI | GATC | 2 cut(s) | 45, 113 |
| BstMAI | GTCTC | 1 cut(s) | 154 |
| BstMBI | GATC | 2 cut(s) | 42, 110 |
| BstNSI | RCATGY | 1 cut(s) | 68 |
| BstUI | CGCG | 1 cut(s) | 9 |
| BstX2I | RGATCY | 1 cut(s) | 110 |
| BstYI | RGATCY | 1 cut(s) | 110 |
| BtsCI | GGATG | 1 cut(s) | 319 |
| Cac8I | GCNNGC | 1 cut(s) | 66 |
| CfoI | GCGC | 1 cut(s) | 9 |
| Csp6I | GTAC | 1 cut(s) | 372 |
| CviAII | CATG | 1 cut(s) | 65 |
| CviJI | RGCY | 5 cut(s) | 124, 140, 257, 262, 369 |
| CviKI_1 | RGCY | 5 cut(s) | 124, 140, 257, 262, 369 |
| CviQI | GTAC | 1 cut(s) | 372 |
| DdeI | CTNAG | 2 cut(s) | 258, 363 |
| DpnI | GATC | 2 cut(s) | 44, 112 |
| DpnII | GATC | 2 cut(s) | 42, 110 |
| Eco31I | GGTCTC | 1 cut(s) | 154 |
| FaeI | CATG | 1 cut(s) | 68 |
| FaiI | YATR | 7 cut(s) | 13, 41, 66, 74, 117, 137, 266 |
| FatI | CATG | 1 cut(s) | 64 |
| FbaI | TGATCA | 1 cut(s) | 42 |
| FokI | GGATG | 1 cut(s) | 306 |
| FspBI | CTAG | 2 cut(s) | 153, 427 |
| GlaI | GCGC | 1 cut(s) | 8 |
| GsuI | CTGGAG | 1 cut(s) | 273 |
| HhaI | GCGC | 1 cut(s) | 9 |
| Hin1II | CATG | 1 cut(s) | 68 |
| Hin6I | GCGC | 1 cut(s) | 7 |
| HinP1I | GCGC | 1 cut(s) | 7 |
| HinfI | GANTC | 3 cut(s) | 314, 383, 404 |
| Hpy188I | TCNGA | 1 cut(s) | 225 |
| Hpy188III | TCNNGA | 3 cut(s) | 159, 210, 362 |
| HpyCH4V | TGCA | 1 cut(s) | 393 |
| HpyF3I | CTNAG | 2 cut(s) | 258, 363 |
| Hsp92II | CATG | 1 cut(s) | 68 |
| HspAI | GCGC | 1 cut(s) | 7 |
| Ksp22I | TGATCA | 1 cut(s) | 42 |
| Kzo9I | GATC | 2 cut(s) | 42, 110 |
| LpnPI | CCDG | 3 cut(s) | 195, 303, 375 |
| MaeI | CTAG | 2 cut(s) | 153, 427 |
| MalI | GATC | 2 cut(s) | 44, 112 |
| MboI | GATC | 2 cut(s) | 42, 110 |
| MboII | GAAGA | 2 cut(s) | 198, 288 |
| MfeI | CAATTG | 1 cut(s) | 93 |
| MflI | RGATCY | 1 cut(s) | 110 |
| MluCI | AATT | 8 cut(s) | 55, 93, 176, 306, 331, 344, 352, 376 |
| MlyI | GAGTC | 1 cut(s) | 392 |
| MmeI | TCCRAC | 1 cut(s) | 102 |
| MnlI | CCTC | 5 cut(s) | 79, 100, 135, 333, 369 |
| MroXI | GAANNNNTTC | 1 cut(s) | 193 |
| MseI | TTAA | 2 cut(s) | 273, 309 |
| MslI | CAYNNNNRTG | 1 cut(s) | 398 |
| MunI | CAATTG | 1 cut(s) | 93 |
| MvnI | CGCG | 1 cut(s) | 9 |
| NdeII | GATC | 2 cut(s) | 42, 110 |
| NlaIII | CATG | 1 cut(s) | 68 |
| NlaIV | GGNNCC | 1 cut(s) | 421 |
| NspI | RCATGY | 1 cut(s) | 68 |
| NspV | TTCGAA | 1 cut(s) | 59 |
| PaeI | GCATGC | 1 cut(s) | 68 |
| PdmI | GAANNNNTTC | 1 cut(s) | 193 |
| PfeI | GAWTC | 2 cut(s) | 314, 404 |
| PleI | GAGTC | 1 cut(s) | 391 |
| PpsI | GAGTC | 1 cut(s) | 391 |
| PshBI | ATTAAT | 1 cut(s) | 273 |
| PspN4I | GGNNCC | 1 cut(s) | 421 |
| PsuI | RGATCY | 1 cut(s) | 110 |
| RsaI | GTAC | 1 cut(s) | 373 |
| RsaNI | GTAC | 1 cut(s) | 372 |
| RseI | CAYNNNNRTG | 1 cut(s) | 398 |
| SaqAI | TTAA | 2 cut(s) | 273, 309 |
| Sau3AI | GATC | 2 cut(s) | 42, 110 |
| SchI | GAGTC | 1 cut(s) | 392 |
| SetI | ASST | 5 cut(s) | 92, 106, 142, 259, 371 |
| SfuI | TTCGAA | 1 cut(s) | 59 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 398 |
| SphI | GCATGC | 1 cut(s) | 68 |
| Sse9I | AATT | 8 cut(s) | 55, 93, 176, 306, 331, 344, 352, 376 |
| SspMI | CTAG | 2 cut(s) | 153, 427 |
| TaqI | TCGA | 2 cut(s) | 59, 158 |
| TasI | AATT | 8 cut(s) | 55, 93, 176, 306, 331, 344, 352, 376 |
| TatI | WGTACW | 1 cut(s) | 371 |
| TfiI | GAWTC | 2 cut(s) | 314, 404 |
| Tru1I | TTAA | 2 cut(s) | 273, 309 |
| Tru9I | TTAA | 2 cut(s) | 273, 309 |
| TspDTI | ATGAA | 1 cut(s) | 254 |
| VspI | ATTAAT | 1 cut(s) | 273 |
| XapI | RAATTY | 3 cut(s) | 176, 344, 376 |
| XceI | RCATGY | 1 cut(s) | 68 |
| XmnI | GAANNNNTTC | 1 cut(s) | 193 |
| XspI | CTAG | 2 cut(s) | 153, 427 |