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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 520 |
| Acc36I | ACCTGC | 1 cut(s) | 520 |
| AccI | GTMKAC | 1 cut(s) | 226 |
| AciI | CCGC | 2 cut(s) | 35, 47 |
| AclWI | GGATC | 1 cut(s) | 963 |
| AcsI | RAATTY | 1 cut(s) | 809 |
| AfaI | GTAC | 3 cut(s) | 57, 287, 727 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 191, 566, 632 |
| AgsI | TTSAA | 3 cut(s) | 28, 699, 826 |
| AhlI | ACTAGT | 1 cut(s) | 221 |
| AjnI | CCWGG | 1 cut(s) | 960 |
| AluBI | AGCT | 4 cut(s) | 42, 86, 490, 830 |
| AluI | AGCT | 4 cut(s) | 42, 86, 490, 830 |
| AlwI | GGATC | 1 cut(s) | 963 |
| ApoI | RAATTY | 1 cut(s) | 809 |
| AspS9I | GGNCC | 3 cut(s) | 308, 393, 965 |
| AsuC2I | CCSGG | 1 cut(s) | 599 |
| AsuHPI | GGTGA | 4 cut(s) | 206, 935, 950, 959 |
| AvaII | GGWCC | 3 cut(s) | 308, 393, 965 |
| AxyI | CCTNAGG | 2 cut(s) | 561, 891 |
| BbsI | GAAGAC | 1 cut(s) | 218 |
| BccI | CCATC | 3 cut(s) | 85, 280, 914 |
| BciT130I | CCWGG | 1 cut(s) | 962 |
| BclI | TGATCA | 2 cut(s) | 66, 318 |
| BcnI | CCSGG | 1 cut(s) | 599 |
| BcuI | ACTAGT | 1 cut(s) | 221 |
| BfaI | CTAG | 5 cut(s) | 222, 255, 678, 687, 705 |
| BfmI | CTRYAG | 1 cut(s) | 81 |
| BfuAI | ACCTGC | 1 cut(s) | 520 |
| BisI | GCNGC | 1 cut(s) | 48 |
| BlpI | GCTNAGC | 1 cut(s) | 38 |
| BlsI | GCNGC | 1 cut(s) | 49 |
| Bme1390I | CCNGG | 2 cut(s) | 599, 962 |
| Bme18I | GGWCC | 3 cut(s) | 308, 393, 965 |
| BmgT120I | GGNCC | 3 cut(s) | 308, 393, 965 |
| BmiI | GGNNCC | 3 cut(s) | 309, 394, 966 |
| BmrFI | CCNGG | 2 cut(s) | 599, 962 |
| BmrI | ACTGGG | 2 cut(s) | 738, 807 |
| BmsI | GCATC | 2 cut(s) | 856, 1000 |
| BmuI | ACTGGG | 2 cut(s) | 738, 807 |
| BpiI | GAAGAC | 1 cut(s) | 218 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 340, 372, 368, 400 |
| Bpu10I | CCTNAGC | 1 cut(s) | 144 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 38 |
| BpuMI | CCSGG | 1 cut(s) | 599 |
| BsaJI | CCNNGG | 2 cut(s) | 311, 961 |
| BsaWI | WCCGGW | 1 cut(s) | 10 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 191, 566, 632 |
| Bse1I | ACTGG | 2 cut(s) | 744, 802 |
| Bse21I | CCTNAGG | 2 cut(s) | 561, 891 |
| BseBI | CCWGG | 1 cut(s) | 962 |
| BseDI | CCNNGG | 2 cut(s) | 311, 961 |
| BseGI | GGATG | 1 cut(s) | 321 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 191, 566, 632 |
| BseMII | CTCAG | 7 cut(s) | 73, 228, 492, 537, 861, 882, 1052 |
| BseNI | ACTGG | 2 cut(s) | 744, 802 |
| BseYI | CCCAGC | 1 cut(s) | 106 |
| BsiSI | CCGG | 2 cut(s) | 11, 599 |
| BslFI | GGGAC | 2 cut(s) | 168, 321 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 191, 566, 632 |
| BsmFI | GGGAC | 2 cut(s) | 168, 321 |
| BsmI | GAATGC | 1 cut(s) | 604 |
| Bsp143I | GATC | 3 cut(s) | 66, 318, 955 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 38 |
| Bsp19I | CCATGG | 1 cut(s) | 311 |
| BspACI | CCGC | 2 cut(s) | 35, 47 |
| BspCNI | CTCAG | 7 cut(s) | 72, 229, 493, 538, 862, 883, 1051 |
| BspHI | TCATGA | 1 cut(s) | 321 |
| BspLI | GGNNCC | 3 cut(s) | 309, 394, 966 |
| BspMI | ACCTGC | 1 cut(s) | 520 |
| BspPI | GGATC | 1 cut(s) | 963 |
| BsrI | ACTGG | 2 cut(s) | 744, 802 |
| BssECI | CCNNGG | 2 cut(s) | 311, 961 |
| BssMI | GATC | 3 cut(s) | 66, 318, 955 |
| BssNAI | GTATAC | 1 cut(s) | 227 |
| BssT1I | CCWWGG | 1 cut(s) | 311 |
| Bst1107I | GTATAC | 1 cut(s) | 227 |
| Bst2UI | CCWGG | 1 cut(s) | 962 |
| Bst4CI | ACNGT | 1 cut(s) | 929 |
| Bst6I | CTCTTC | 1 cut(s) | 772 |
| BstC8I | GCNNGC | 3 cut(s) | 414, 672, 993 |
| BstDSI | CCRYGG | 1 cut(s) | 311 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 630 |
| BstF5I | GGATG | 1 cut(s) | 321 |
| BstKTI | GATC | 3 cut(s) | 69, 321, 958 |
| BstMBI | GATC | 3 cut(s) | 66, 318, 955 |
| BstNI | CCWGG | 1 cut(s) | 962 |
| BstSCI | CCNGG | 2 cut(s) | 597, 960 |
| BstSFI | CTRYAG | 1 cut(s) | 81 |
| BstV2I | GAAGAC | 1 cut(s) | 218 |
| BstZ17I | GTATAC | 1 cut(s) | 227 |
| Bsu36I | CCTNAGG | 2 cut(s) | 561, 891 |
| BtgI | CCRYGG | 1 cut(s) | 311 |
| BtsCI | GGATG | 1 cut(s) | 321 |
| BtsI | GCAGTG | 1 cut(s) | 168 |
| BtsIMutI | CAGTG | 3 cut(s) | 168, 480, 804 |
| BveI | ACCTGC | 1 cut(s) | 520 |
| Cac8I | GCNNGC | 3 cut(s) | 414, 672, 993 |
| CciI | TCATGA | 1 cut(s) | 321 |
| Cfr13I | GGNCC | 3 cut(s) | 308, 393, 965 |
| CseI | GACGC | 1 cut(s) | 143 |
| Csp6I | GTAC | 3 cut(s) | 56, 286, 726 |
| CviAII | CATG | 4 cut(s) | 304, 312, 322, 778 |
| CviQI | GTAC | 3 cut(s) | 56, 286, 726 |
| DpnI | GATC | 3 cut(s) | 68, 320, 957 |
| DpnII | GATC | 3 cut(s) | 66, 318, 955 |
| DraI | TTTAAA | 1 cut(s) | 903 |
| Eam1104I | CTCTTC | 1 cut(s) | 772 |
| EarI | CTCTTC | 1 cut(s) | 772 |
| Eco130I | CCWWGG | 1 cut(s) | 311 |
| Eco47I | GGWCC | 3 cut(s) | 308, 393, 965 |
| Eco81I | CCTNAGG | 2 cut(s) | 561, 891 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 630 |
| EcoO109I | RGGNCCY | 1 cut(s) | 965 |
| EcoRII | CCWGG | 1 cut(s) | 960 |
| EcoT14I | CCWWGG | 1 cut(s) | 311 |
| ErhI | CCWWGG | 1 cut(s) | 311 |
| FaeI | CATG | 4 cut(s) | 307, 315, 325, 781 |
| FaqI | GGGAC | 2 cut(s) | 168, 321 |
| FatI | CATG | 4 cut(s) | 303, 311, 321, 777 |
| FbaI | TGATCA | 2 cut(s) | 66, 318 |
| FblI | GTMKAC | 1 cut(s) | 226 |
| Fnu4HI | GCNGC | 1 cut(s) | 48 |
| FokI | GGATG | 1 cut(s) | 328 |
| Fsp4HI | GCNGC | 1 cut(s) | 48 |
| FspBI | CTAG | 5 cut(s) | 222, 255, 678, 687, 705 |
| GluI | GCNGC | 1 cut(s) | 48 |
| GsaI | CCCAGC | 1 cut(s) | 110 |
| HapII | CCGG | 2 cut(s) | 11, 599 |
| HgaI | GACGC | 1 cut(s) | 143 |
| Hin1II | CATG | 4 cut(s) | 307, 315, 325, 781 |
| HindIII | AAGCTT | 1 cut(s) | 488 |
| HinfI | GANTC | 4 cut(s) | 5, 14, 232, 974 |
| HpaII | CCGG | 2 cut(s) | 11, 599 |
| HphI | GGTGA | 4 cut(s) | 206, 935, 950, 959 |
| Hpy166II | GTNNAC | 3 cut(s) | 166, 227, 804 |
| Hpy188I | TCNGA | 6 cut(s) | 66, 157, 333, 502, 610, 1041 |
| Hpy188III | TCNNGA | 6 cut(s) | 236, 295, 322, 396, 458, 1065 |
| Hpy8I | GTNNAC | 3 cut(s) | 166, 227, 804 |
| HpyAV | CCTTC | 2 cut(s) | 574, 1036 |
| HpyCH4III | ACNGT | 1 cut(s) | 929 |
| HpyCH4V | TGCA | 5 cut(s) | 412, 535, 781, 991, 1021 |
| Hsp92II | CATG | 4 cut(s) | 307, 315, 325, 781 |
| Ksp22I | TGATCA | 2 cut(s) | 66, 318 |
| Kzo9I | GATC | 3 cut(s) | 66, 318, 955 |
| LmnI | GCTCC | 4 cut(s) | 409, 472, 601, 679 |
| LweI | GCATC | 2 cut(s) | 856, 1000 |
| MaeI | CTAG | 5 cut(s) | 222, 255, 678, 687, 705 |
| MaeIII | GTNAC | 5 cut(s) | 19, 205, 299, 923, 947 |
| MalI | GATC | 3 cut(s) | 68, 320, 957 |
| MboI | GATC | 3 cut(s) | 66, 318, 955 |
| MboII | GAAGA | 9 cut(s) | 125, 223, 346, 377, 391, 529, 759, 908, 923 |
| MluCI | AATT | 4 cut(s) | 440, 510, 736, 809 |
| MlyI | GAGTC | 1 cut(s) | 968 |
| MseI | TTAA | 4 cut(s) | 372, 792, 902, 939 |
| MslI | CAYNNNNRTG | 1 cut(s) | 609 |
| MspI | CCGG | 2 cut(s) | 11, 599 |
| MspR9I | CCNGG | 2 cut(s) | 599, 962 |
| Mva1269I | GAATGC | 1 cut(s) | 604 |
| MvaI | CCWGG | 1 cut(s) | 962 |
| NciI | CCSGG | 1 cut(s) | 599 |
| NcoI | CCATGG | 1 cut(s) | 311 |
| NdeII | GATC | 3 cut(s) | 66, 318, 955 |
| NlaIII | CATG | 4 cut(s) | 307, 315, 325, 781 |
| NlaIV | GGNNCC | 3 cut(s) | 309, 394, 966 |
| NmuCI | GTSAC | 3 cut(s) | 19, 923, 947 |
| PagI | TCATGA | 1 cut(s) | 321 |
| PaqCI | CACCTGC | 1 cut(s) | 520 |
| PctI | GAATGC | 1 cut(s) | 604 |
| PfeI | GAWTC | 3 cut(s) | 5, 14, 232 |
| PkrI | GCNGC | 1 cut(s) | 49 |
| PleI | GAGTC | 1 cut(s) | 968 |
| PpsI | GAGTC | 1 cut(s) | 968 |
| PpuMI | RGGWCCY | 1 cut(s) | 965 |
| Psp5II | RGGWCCY | 1 cut(s) | 965 |
| Psp6I | CCWGG | 1 cut(s) | 960 |
| PspFI | CCCAGC | 1 cut(s) | 106 |
| PspGI | CCWGG | 1 cut(s) | 960 |
| PspN4I | GGNNCC | 3 cut(s) | 309, 394, 966 |
| PspPI | GGNCC | 3 cut(s) | 308, 393, 965 |
| PspPPI | RGGWCCY | 1 cut(s) | 965 |
| RsaI | GTAC | 3 cut(s) | 57, 287, 727 |
| RsaNI | GTAC | 3 cut(s) | 56, 286, 726 |
| RseI | CAYNNNNRTG | 1 cut(s) | 609 |
| SaqAI | TTAA | 4 cut(s) | 372, 792, 902, 939 |
| SatI | GCNGC | 1 cut(s) | 48 |
| Sau3AI | GATC | 3 cut(s) | 66, 318, 955 |
| Sau96I | GGNCC | 3 cut(s) | 308, 393, 965 |
| SchI | GAGTC | 1 cut(s) | 968 |
| ScrFI | CCNGG | 2 cut(s) | 599, 962 |
| SetI | ASST | 9 cut(s) | 34, 44, 88, 492, 534, 562, 832, 892, 986 |
| SfaNI | GCATC | 2 cut(s) | 856, 1000 |
| SfcI | CTRYAG | 1 cut(s) | 81 |
| SinI | GGWCC | 3 cut(s) | 308, 393, 965 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 609 |
| SpeI | ACTAGT | 1 cut(s) | 221 |
| Sse9I | AATT | 4 cut(s) | 440, 510, 736, 809 |
| SsiI | CCGC | 2 cut(s) | 35, 47 |
| SspMI | CTAG | 5 cut(s) | 222, 255, 678, 687, 705 |
| StyD4I | CCNGG | 2 cut(s) | 597, 960 |
| StyI | CCWWGG | 1 cut(s) | 311 |
| TaaI | ACNGT | 1 cut(s) | 929 |
| TaqII | GACCGA | 1 cut(s) | 230 |
| TasI | AATT | 4 cut(s) | 440, 510, 736, 809 |
| TatI | WGTACW | 1 cut(s) | 55 |
| TauI | GCSGC | 1 cut(s) | 50 |
| TfiI | GAWTC | 3 cut(s) | 5, 14, 232 |
| Tru1I | TTAA | 4 cut(s) | 372, 792, 902, 939 |
| Tru9I | TTAA | 4 cut(s) | 372, 792, 902, 939 |
| TscAI | CASTG | 3 cut(s) | 168, 487, 811 |
| TseFI | GTSAC | 3 cut(s) | 19, 923, 947 |
| Tsp45I | GTSAC | 3 cut(s) | 19, 923, 947 |
| TspDTI | ATGAA | 2 cut(s) | 338, 759 |
| TspGWI | ACGGA | 1 cut(s) | 7 |
| TspRI | CASTG | 3 cut(s) | 168, 487, 811 |
| VpaK11BI | GGWCC | 3 cut(s) | 308, 393, 965 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 630 |
| XapI | RAATTY | 1 cut(s) | 809 |
| XmiI | GTMKAC | 1 cut(s) | 226 |
| XspI | CTAG | 5 cut(s) | 222, 255, 678, 687, 705 |