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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 794 |
| AclWI | GGATC | 1 cut(s) | 539 |
| AcoI | YGGCCR | 1 cut(s) | 721 |
| AcsI | RAATTY | 2 cut(s) | 167, 874 |
| AfaI | GTAC | 3 cut(s) | 385, 757, 836 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 71, 704 |
| AflII | CTTAAG | 1 cut(s) | 419 |
| AgsI | TTSAA | 3 cut(s) | 269, 538, 871 |
| AhlI | ACTAGT | 1 cut(s) | 752 |
| AjnI | CCWGG | 4 cut(s) | 83, 157, 551, 723 |
| AluBI | AGCT | 1 cut(s) | 131 |
| AluI | AGCT | 1 cut(s) | 131 |
| Alw26I | GTCTC | 1 cut(s) | 332 |
| AlwI | GGATC | 1 cut(s) | 539 |
| Aor13HI | TCCGGA | 1 cut(s) | 794 |
| AoxI | GGCC | 1 cut(s) | 721 |
| ApeKI | GCWGC | 1 cut(s) | 365 |
| ApoI | RAATTY | 2 cut(s) | 167, 874 |
| AspA2I | CCTAGG | 1 cut(s) | 134 |
| AspS9I | GGNCC | 2 cut(s) | 80, 897 |
| AsuHPI | GGTGA | 1 cut(s) | 212 |
| AvaII | GGWCC | 2 cut(s) | 80, 897 |
| AvrII | CCTAGG | 1 cut(s) | 134 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 585, 618 |
| BalI | TGGCCA | 1 cut(s) | 723 |
| BbsI | GAAGAC | 2 cut(s) | 473, 492 |
| BbvI | GCAGC | 1 cut(s) | 352 |
| BccI | CCATC | 2 cut(s) | 74, 191 |
| BciT130I | CCWGG | 4 cut(s) | 85, 159, 553, 725 |
| BclI | TGATCA | 3 cut(s) | 238, 390, 585 |
| BcoDI | GTCTC | 1 cut(s) | 332 |
| BcuI | ACTAGT | 1 cut(s) | 752 |
| BfaI | CTAG | 2 cut(s) | 135, 753 |
| BfrI | CTTAAG | 1 cut(s) | 419 |
| BisI | GCNGC | 1 cut(s) | 366 |
| BlnI | CCTAGG | 1 cut(s) | 134 |
| BlsI | GCNGC | 1 cut(s) | 367 |
| BmcAI | AGTACT | 2 cut(s) | 385, 757 |
| Bme1390I | CCNGG | 4 cut(s) | 85, 159, 553, 725 |
| Bme18I | GGWCC | 2 cut(s) | 80, 897 |
| BmgT120I | GGNCC | 2 cut(s) | 80, 897 |
| BmiI | GGNNCC | 2 cut(s) | 82, 163 |
| BmrFI | CCNGG | 4 cut(s) | 85, 159, 553, 725 |
| BpiI | GAAGAC | 2 cut(s) | 473, 492 |
| BpmI | CTGGAG | 1 cut(s) | 33 |
| BpuEI | CTTGAG | 2 cut(s) | 680, 684 |
| BsaJI | CCNNGG | 2 cut(s) | 83, 134 |
| BsaWI | WCCGGW | 1 cut(s) | 794 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 28 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 71, 704 |
| Bse1I | ACTGG | 2 cut(s) | 17, 790 |
| Bse3DI | GCAATG | 1 cut(s) | 724 |
| BseAI | TCCGGA | 1 cut(s) | 794 |
| BseBI | CCWGG | 4 cut(s) | 85, 159, 553, 725 |
| BseDI | CCNNGG | 2 cut(s) | 83, 134 |
| BseGI | GGATG | 3 cut(s) | 93, 223, 241 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 71, 704 |
| BseMI | GCAATG | 1 cut(s) | 724 |
| BseMII | CTCAG | 2 cut(s) | 527, 804 |
| BseNI | ACTGG | 2 cut(s) | 17, 790 |
| BseXI | GCAGC | 1 cut(s) | 352 |
| BshFI | GGCC | 1 cut(s) | 723 |
| BsiSI | CCGG | 1 cut(s) | 795 |
| BslFI | GGGAC | 1 cut(s) | 491 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 71, 704 |
| BsmAI | GTCTC | 1 cut(s) | 332 |
| BsmFI | GGGAC | 1 cut(s) | 491 |
| BsmI | GAATGC | 1 cut(s) | 211 |
| BsnI | GGCC | 1 cut(s) | 723 |
| Bsp13I | TCCGGA | 1 cut(s) | 794 |
| Bsp143I | GATC | 4 cut(s) | 238, 390, 544, 585 |
| BspANI | GGCC | 1 cut(s) | 723 |
| BspCNI | CTCAG | 2 cut(s) | 526, 805 |
| BspEI | TCCGGA | 1 cut(s) | 794 |
| BspLI | GGNNCC | 2 cut(s) | 82, 163 |
| BspPI | GGATC | 1 cut(s) | 539 |
| BspTI | CTTAAG | 1 cut(s) | 419 |
| BsrDI | GCAATG | 1 cut(s) | 724 |
| BsrI | ACTGG | 2 cut(s) | 17, 790 |
| BssECI | CCNNGG | 2 cut(s) | 83, 134 |
| BssMI | GATC | 4 cut(s) | 238, 390, 544, 585 |
| BssT1I | CCWWGG | 1 cut(s) | 134 |
| Bst2UI | CCWGG | 4 cut(s) | 85, 159, 553, 725 |
| Bst4CI | ACNGT | 4 cut(s) | 323, 388, 644, 839 |
| BstAFI | CTTAAG | 1 cut(s) | 419 |
| BstC8I | GCNNGC | 1 cut(s) | 251 |
| BstDEI | CTNAG | 3 cut(s) | 480, 513, 813 |
| BstF5I | GGATG | 3 cut(s) | 93, 223, 241 |
| BstKTI | GATC | 4 cut(s) | 241, 393, 547, 588 |
| BstMAI | GTCTC | 1 cut(s) | 332 |
| BstMBI | GATC | 4 cut(s) | 238, 390, 544, 585 |
| BstNI | CCWGG | 4 cut(s) | 85, 159, 553, 725 |
| BstSCI | CCNGG | 4 cut(s) | 83, 157, 551, 723 |
| BstV1I | GCAGC | 1 cut(s) | 352 |
| BstV2I | GAAGAC | 2 cut(s) | 473, 492 |
| BsuRI | GGCC | 1 cut(s) | 723 |
| BtsCI | GGATG | 3 cut(s) | 93, 223, 241 |
| BtsIMutI | CAGTG | 1 cut(s) | 328 |
| Cac8I | GCNNGC | 1 cut(s) | 251 |
| Cfr13I | GGNCC | 2 cut(s) | 80, 897 |
| CsiI | ACCWGGT | 1 cut(s) | 157 |
| Csp6I | GTAC | 3 cut(s) | 384, 756, 835 |
| CviAII | CATG | 7 cut(s) | 77, 254, 410, 446, 542, 599, 824 |
| CviJI | RGCY | 9 cut(s) | 131, 314, 416, 517, 551, 723, 802, 817, 882 |
| CviKI_1 | RGCY | 9 cut(s) | 131, 314, 416, 517, 551, 723, 802, 817, 882 |
| CviQI | GTAC | 3 cut(s) | 384, 756, 835 |
| DdeI | CTNAG | 3 cut(s) | 480, 513, 813 |
| DpnI | GATC | 4 cut(s) | 240, 392, 546, 587 |
| DpnII | GATC | 4 cut(s) | 238, 390, 544, 585 |
| DraI | TTTAAA | 1 cut(s) | 576 |
| EaeI | YGGCCR | 1 cut(s) | 721 |
| Eco130I | CCWWGG | 1 cut(s) | 134 |
| Eco47I | GGWCC | 2 cut(s) | 80, 897 |
| EcoRII | CCWGG | 4 cut(s) | 83, 157, 551, 723 |
| EcoT14I | CCWWGG | 1 cut(s) | 134 |
| ErhI | CCWWGG | 1 cut(s) | 134 |
| FaeI | CATG | 7 cut(s) | 80, 257, 413, 449, 545, 602, 827 |
| FaqI | GGGAC | 1 cut(s) | 491 |
| FatI | CATG | 7 cut(s) | 76, 253, 409, 445, 541, 598, 823 |
| FbaI | TGATCA | 3 cut(s) | 238, 390, 585 |
| Fnu4HI | GCNGC | 1 cut(s) | 366 |
| FokI | GGATG | 3 cut(s) | 100, 230, 248 |
| Fsp4HI | GCNGC | 1 cut(s) | 366 |
| FspBI | CTAG | 2 cut(s) | 135, 753 |
| GluI | GCNGC | 1 cut(s) | 366 |
| GsuI | CTGGAG | 1 cut(s) | 33 |
| HaeIII | GGCC | 1 cut(s) | 723 |
| HapII | CCGG | 1 cut(s) | 795 |
| Hin1II | CATG | 7 cut(s) | 80, 257, 413, 449, 545, 602, 827 |
| HincII | GTYRAC | 1 cut(s) | 891 |
| HindII | GTYRAC | 1 cut(s) | 891 |
| HinfI | GANTC | 6 cut(s) | 41, 139, 370, 459, 622, 629 |
| HpaII | CCGG | 1 cut(s) | 795 |
| HphI | GGTGA | 1 cut(s) | 212 |
| Hpy166II | GTNNAC | 2 cut(s) | 374, 891 |
| Hpy188I | TCNGA | 4 cut(s) | 585, 736, 763, 814 |
| Hpy188III | TCNNGA | 5 cut(s) | 50, 463, 626, 659, 795 |
| Hpy8I | GTNNAC | 2 cut(s) | 374, 891 |
| HpyAV | CCTTC | 1 cut(s) | 618 |
| HpyCH4III | ACNGT | 4 cut(s) | 323, 388, 644, 839 |
| HpyCH4V | TGCA | 3 cut(s) | 181, 214, 717 |
| HpyF3I | CTNAG | 3 cut(s) | 480, 513, 813 |
| Hsp92II | CATG | 7 cut(s) | 80, 257, 413, 449, 545, 602, 827 |
| Kpn2I | TCCGGA | 1 cut(s) | 794 |
| Ksp22I | TGATCA | 3 cut(s) | 238, 390, 585 |
| Kzo9I | GATC | 4 cut(s) | 238, 390, 544, 585 |
| LmnI | GCTCC | 1 cut(s) | 136 |
| Lsp1109I | GCAGC | 1 cut(s) | 352 |
| MabI | ACCWGGT | 1 cut(s) | 157 |
| MaeI | CTAG | 2 cut(s) | 135, 753 |
| MaeIII | GTNAC | 1 cut(s) | 58 |
| MalI | GATC | 4 cut(s) | 240, 392, 546, 587 |
| MboI | GATC | 4 cut(s) | 238, 390, 544, 585 |
| MboII | GAAGA | 4 cut(s) | 36, 478, 492, 675 |
| MlsI | TGGCCA | 1 cut(s) | 723 |
| MluCI | AATT | 9 cut(s) | 167, 276, 308, 394, 654, 676, 850, 859, 874 |
| MluNI | TGGCCA | 1 cut(s) | 723 |
| MlyI | GAGTC | 1 cut(s) | 379 |
| MnlI | CCTC | 7 cut(s) | 250, 570, 622, 657, 708, 813, 828 |
| Mox20I | TGGCCA | 1 cut(s) | 723 |
| MroI | TCCGGA | 1 cut(s) | 794 |
| MscI | TGGCCA | 1 cut(s) | 723 |
| MseI | TTAA | 4 cut(s) | 92, 420, 495, 575 |
| Msp20I | TGGCCA | 1 cut(s) | 723 |
| MspCI | CTTAAG | 1 cut(s) | 419 |
| MspI | CCGG | 1 cut(s) | 795 |
| MspR9I | CCNGG | 4 cut(s) | 85, 159, 553, 725 |
| Mva1269I | GAATGC | 1 cut(s) | 211 |
| MvaI | CCWGG | 4 cut(s) | 85, 159, 553, 725 |
| NdeII | GATC | 4 cut(s) | 238, 390, 544, 585 |
| NlaIII | CATG | 7 cut(s) | 80, 257, 413, 449, 545, 602, 827 |
| NlaIV | GGNNCC | 2 cut(s) | 82, 163 |
| PctI | GAATGC | 1 cut(s) | 211 |
| PfeI | GAWTC | 5 cut(s) | 41, 139, 459, 622, 629 |
| PflFI | GACNNNGTC | 2 cut(s) | 642, 895 |
| PkrI | GCNGC | 1 cut(s) | 367 |
| PleI | GAGTC | 1 cut(s) | 378 |
| PpsI | GAGTC | 1 cut(s) | 378 |
| Psp6I | CCWGG | 4 cut(s) | 83, 157, 551, 723 |
| PspGI | CCWGG | 4 cut(s) | 83, 157, 551, 723 |
| PspN4I | GGNNCC | 2 cut(s) | 82, 163 |
| PspPI | GGNCC | 2 cut(s) | 80, 897 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 213, 245 |
| PsyI | GACNNNGTC | 2 cut(s) | 642, 895 |
| RsaI | GTAC | 3 cut(s) | 385, 757, 836 |
| RsaNI | GTAC | 3 cut(s) | 384, 756, 835 |
| SaqAI | TTAA | 4 cut(s) | 92, 420, 495, 575 |
| SatI | GCNGC | 1 cut(s) | 366 |
| Sau3AI | GATC | 4 cut(s) | 238, 390, 544, 585 |
| Sau96I | GGNCC | 2 cut(s) | 80, 897 |
| ScaI | AGTACT | 2 cut(s) | 385, 757 |
| SchI | GAGTC | 1 cut(s) | 379 |
| ScrFI | CCNGG | 4 cut(s) | 85, 159, 553, 725 |
| SetI | ASST | 9 cut(s) | 76, 133, 163, 261, 288, 300, 562, 706, 729 |
| SexAI | ACCWGGT | 1 cut(s) | 157 |
| SinI | GGWCC | 2 cut(s) | 80, 897 |
| SmlI | CTYRAG | 3 cut(s) | 419, 659, 699 |
| SmoI | CTYRAG | 3 cut(s) | 419, 659, 699 |
| SpeI | ACTAGT | 1 cut(s) | 752 |
| Sse9I | AATT | 9 cut(s) | 167, 276, 308, 394, 654, 676, 850, 859, 874 |
| SspI | AATATT | 2 cut(s) | 475, 694 |
| SspMI | CTAG | 2 cut(s) | 135, 753 |
| StyD4I | CCNGG | 4 cut(s) | 83, 157, 551, 723 |
| StyI | CCWWGG | 1 cut(s) | 134 |
| TaaI | ACNGT | 4 cut(s) | 323, 388, 644, 839 |
| TaqI | TCGA | 1 cut(s) | 316 |
| TasI | AATT | 9 cut(s) | 167, 276, 308, 394, 654, 676, 850, 859, 874 |
| TatI | WGTACW | 2 cut(s) | 383, 755 |
| TfiI | GAWTC | 5 cut(s) | 41, 139, 459, 622, 629 |
| Tru1I | TTAA | 4 cut(s) | 92, 420, 495, 575 |
| Tru9I | TTAA | 4 cut(s) | 92, 420, 495, 575 |
| TscAI | CASTG | 1 cut(s) | 328 |
| TseI | GCWGC | 1 cut(s) | 365 |
| TspDTI | ATGAA | 9 cut(s) | 11, 131, 217, 234, 290, 621, 669, 704, 761 |
| TspGWI | ACGGA | 1 cut(s) | 493 |
| TspRI | CASTG | 1 cut(s) | 328 |
| Tth111I | GACNNNGTC | 2 cut(s) | 642, 895 |
| Vha464I | CTTAAG | 1 cut(s) | 419 |
| VpaK11BI | GGWCC | 2 cut(s) | 80, 897 |
| XapI | RAATTY | 2 cut(s) | 167, 874 |
| XmaJI | CCTAGG | 1 cut(s) | 134 |
| XspI | CTAG | 2 cut(s) | 135, 753 |
| ZrmI | AGTACT | 2 cut(s) | 385, 757 |