Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004850

Physical Location & Seq

Genomic Coordinates Reverse (-)

30621661 .. 30625091

Gene Structure 3431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g38710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGGGAAGAAAGTAAGCCAAACATCGGTGAAAATATCTAAGAAAGAGAAGAAGGAGTTTAACAGTTTGATTAGACTATTGAGGCCTAAAGTCTACATCACTGACTGCTCAAGCTTCAAGACCCTTGTGCAAGACCTCACCGGCAATGGAAGCTCCAATATCTCAATCACTACTCCCTCATCACACCCTCAGCTACATCACAAAGTACCAGTTGTTGATGTTGAGGAGTATCAAGTGGAGCCTGAAAGGAGTACTAGCAGTGTGGATGTCTCTACTGATGCATCATTTGATTCTTCCCAGCTGTGGAACCAAGAAATGTTTATGAATGACCAAGAATTGAACCAACTGTGTTATCAGATGTACTCAGATGATACAACAACAACAACAACAAATATTTTAGAAGGTTCATCACCTTCGACAGCAGACCAAATGGTGGATATGTTGCCATTTCAAGATCTCGAGTCCTGGCTTTTGGGGACTGAACCTTTTGATCCTTTCAACAATATTCATGGTTATGACTGTTTGGGTGATGAAAACAAAGTAAAGAATGTGGATTGCTTAGGTCCAGCAACGCAGCAAGAAGATGGGTATTGTCGTACTTATGGATCTGGTGTGCCTCGAAATTTTGTGTATCCACAGTCATCAACCCCATCTGGAAATTCTAATGATTTGGTTCAGAAAATAACTGAATCTATTGCAAAGCACTTTGAGGAAAAGTTTGAGAGGATGGAAGCTCAACTAAATTCTCTAGAGAACAAGGAGAGGAATCACAATGGACAGGTTCTGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

264

Amino Acids

29.61

Weight (kDa)

4.77

Isoelectric Point (pI)

49.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004850)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30420 FvH4_6g38531 FvH4_6g38710
prunus_persica	Prupe.3G175400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0151791
rosa_laevigata	RLG00000020582 RLG00000027644 RLG00000028957 RLG00000034011
rosa_multiflora	Rmu_sc0000021.1_g000006 Rmu_sc0002042.1_g000004 Rmu_sc0005294.1_g000028 Rmu_sc0007589.1_g000005 Rmu_sc0007589.1_g000007
rosa_roxburghii	Rroxscaffold_1G00039800 Rroxscaffold_2G00096150 Rroxscaffold_4G00294120
rosa_rugosa	Rorug01G0168000 Rorug01G0298300 Rorug02G0429100 Rorug02G0431600 Rorug05G0188400
rosa_samantha	Rh1BG151700 Rh1DG183600 Rh2AG489900 Rh2CG476200 Rh2DG513600 Rh5AG274000 Rh5BG279000 Rh5CG311100 Rh5DG287200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	433
AccI	GTMKAC	1 cut(s)	93
AclWI	GGATC	2 cut(s)	485, 613
AcsI	RAATTY	3 cut(s)	622, 658, 742
AfaI	GTAC	4 cut(s)	207, 253, 362, 598
AfiI	CCNNNNNNNGG	3 cut(s)	25, 303, 433
AgsI	TTSAA	4 cut(s)	118, 340, 452, 499
AjnI	CCWGG	1 cut(s)	464
AluBI	AGCT	5 cut(s)	114, 153, 193, 301, 734
AluI	AGCT	5 cut(s)	114, 153, 193, 301, 734
Alw26I	GTCTC	1 cut(s)	274
AlwI	GGATC	2 cut(s)	485, 613
AlwNI	CAGNNNCTG	1 cut(s)	784
Ama87I	CYCGRG	1 cut(s)	458
AoxI	GGCC	1 cut(s)	83
ApeKI	GCWGC	1 cut(s)	574
ApoI	RAATTY	3 cut(s)	622, 658, 742
AspS9I	GGNCC	1 cut(s)	563
AsuHPI	GGTGA	4 cut(s)	40, 130, 402, 539
AvaI	CYCGRG	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	563
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	586
BccI	CCATC	3 cut(s)	578, 658, 721
BciT130I	CCWGG	1 cut(s)	466
BciVI	GTATCC	1 cut(s)	642
BcoDI	GTCTC	1 cut(s)	274
BfaI	CTAG	2 cut(s)	255, 749
BfuI	GTATCC	1 cut(s)	642
BglII	AGATCT	1 cut(s)	454
BisI	GCNGC	1 cut(s)	575
BlsI	GCNGC	1 cut(s)	576
BmcAI	AGTACT	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	466
Bme18I	GGWCC	1 cut(s)	563
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	1 cut(s)	563
BmiI	GGNNCC	2 cut(s)	240, 308
BmrFI	CCNGG	1 cut(s)	466
BmsI	GCATC	2 cut(s)	268, 290
Bpu10I	CCTNAGC	2 cut(s)	189, 559
BpuEI	CTTGAG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 303, 433
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	466
BseGI	GGATG	2 cut(s)	271, 732
BseLI	CCNNNNNNNGG	3 cut(s)	25, 303, 433
BseMI	GCAATG	1 cut(s)	151
BseMII	CTCAG	2 cut(s)	203, 378
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	586
BseYI	CCCAGC	1 cut(s)	297
BshFI	GGCC	1 cut(s)	85
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	490
BslI	CCNNNNNNNGG	3 cut(s)	25, 303, 433
BsmAI	GTCTC	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	490
BsnI	GGCC	1 cut(s)	85
BsoBI	CYCGRG	1 cut(s)	458
Bsp143I	GATC	3 cut(s)	454, 490, 605
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	2 cut(s)	202, 377
BspLI	GGNNCC	2 cut(s)	240, 308
BspPI	GGATC	2 cut(s)	485, 613
BsrDI	GCAATG	1 cut(s)	151
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	140
BssMI	GATC	3 cut(s)	454, 490, 605
Bst2UI	CCWGG	1 cut(s)	466
Bst4CI	ACNGT	4 cut(s)	65, 348, 521, 639
BstDEI	CTNAG	4 cut(s)	39, 189, 364, 559
BstF5I	GGATG	2 cut(s)	271, 732
BstKTI	GATC	3 cut(s)	457, 493, 608
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	3 cut(s)	454, 490, 605
BstMWI	GCNNNNNNNGC	1 cut(s)	150
BstNI	CCWGG	1 cut(s)	466
BstSCI	CCNGG	1 cut(s)	464
BstV1I	GCAGC	1 cut(s)	586
BstX2I	RGATCY	2 cut(s)	454, 605
BstYI	RGATCY	2 cut(s)	454, 605
BsuI	GTATCC	1 cut(s)	642
BsuRI	GGCC	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	271, 732
BtsI	GCAGTG	1 cut(s)	265
BtsIMutI	CAGTG	2 cut(s)	99, 265
CaiI	CAGNNNCTG	1 cut(s)	784
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	563
Csp6I	GTAC	4 cut(s)	206, 252, 361, 597
CviAII	CATG	1 cut(s)	509
CviJI	RGCY	9 cut(s)	18, 85, 114, 153, 193, 241, 301, 469, 734
CviKI_1	RGCY	9 cut(s)	18, 85, 114, 153, 193, 241, 301, 469, 734
CviQI	GTAC	4 cut(s)	206, 252, 361, 597
DdeI	CTNAG	4 cut(s)	39, 189, 364, 559
DpnI	GATC	3 cut(s)	456, 492, 607
DpnII	GATC	3 cut(s)	454, 490, 605
Eco147I	AGGCCT	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	563
Eco88I	CYCGRG	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	464
EcoT22I	ATGCAT	1 cut(s)	283
FaeI	CATG	1 cut(s)	512
FaiI	YATR	5 cut(s)	323, 440, 510, 516, 603
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	1 cut(s)	508
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	575
FokI	GGATG	2 cut(s)	278, 739
Fsp4HI	GCNGC	1 cut(s)	575
FspBI	CTAG	2 cut(s)	255, 749
GluI	GCNGC	1 cut(s)	575
GsaI	CCCAGC	1 cut(s)	301
HaeIII	GGCC	1 cut(s)	85
HapII	CCGG	1 cut(s)	141
Hin1II	CATG	1 cut(s)	512
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	4 cut(s)	290, 461, 689, 766
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	4 cut(s)	40, 130, 402, 539
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	3 cut(s)	357, 367, 678
Hpy188III	TCNNGA	5 cut(s)	118, 452, 458, 654, 749
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	3 cut(s)	46, 395, 423
HpyCH4III	ACNGT	4 cut(s)	65, 348, 521, 639
HpyCH4V	TGCA	3 cut(s)	130, 281, 698
HpyF10VI	GCNNNNNNNGC	1 cut(s)	150
HpyF3I	CTNAG	4 cut(s)	39, 189, 364, 559
Hsp92II	CATG	1 cut(s)	512
Kzo9I	GATC	3 cut(s)	454, 490, 605
LmnI	GCTCC	2 cut(s)	158, 238
Lsp1109I	GCAGC	1 cut(s)	586
LweI	GCATC	2 cut(s)	268, 290
MaeI	CTAG	2 cut(s)	255, 749
MalI	GATC	3 cut(s)	456, 492, 607
MboI	GATC	3 cut(s)	454, 490, 605
MboII	GAAGA	4 cut(s)	19, 61, 285, 593
MflI	RGATCY	2 cut(s)	454, 605
MluCI	AATT	4 cut(s)	335, 622, 658, 742
MlyI	GAGTC	1 cut(s)	470
MnlI	CCTC	9 cut(s)	75, 146, 187, 198, 217, 627, 703, 717, 756
Mph1103I	ATGCAT	1 cut(s)	283
MseI	TTAA	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	513
MspA1I	CMGCKG	1 cut(s)	301
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	466
MvaI	CCWGG	1 cut(s)	466
MwoI	GCNNNNNNNGC	1 cut(s)	150
NdeII	GATC	3 cut(s)	454, 490, 605
NlaIII	CATG	1 cut(s)	512
NlaIV	GGNNCC	2 cut(s)	240, 308
NsiI	ATGCAT	1 cut(s)	283
PaeR7I	CTCGAG	1 cut(s)	458
PceI	AGGCCT	1 cut(s)	85
PfeI	GAWTC	3 cut(s)	290, 689, 766
PflMI	CCANNNNNTGG	1 cut(s)	433
PkrI	GCNGC	1 cut(s)	576
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
Psp6I	CCWGG	1 cut(s)	464
PspFI	CCCAGC	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	464
PspN4I	GGNNCC	2 cut(s)	240, 308
PspPI	GGNCC	1 cut(s)	563
PstNI	CAGNNNCTG	1 cut(s)	784
PsuI	RGATCY	2 cut(s)	454, 605
PvuII	CAGCTG	1 cut(s)	301
RsaI	GTAC	4 cut(s)	207, 253, 362, 598
RsaNI	GTAC	4 cut(s)	206, 252, 361, 597
RseI	CAYNNNNRTG	1 cut(s)	513
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	1 cut(s)	575
Sau3AI	GATC	3 cut(s)	454, 490, 605
Sau96I	GGNCC	1 cut(s)	563
ScaI	AGTACT	1 cut(s)	253
SchI	GAGTC	1 cut(s)	470
ScrFI	CCNGG	1 cut(s)	466
SfaNI	GCATC	2 cut(s)	268, 290
Sfr274I	CTCGAG	1 cut(s)	458
SinI	GGWCC	1 cut(s)	563
SlaI	CTCGAG	1 cut(s)	458
SmiMI	CAYNNNNRTG	1 cut(s)	513
SmlI	CTYRAG	2 cut(s)	109, 458
SmoI	CTYRAG	2 cut(s)	109, 458
Sse9I	AATT	4 cut(s)	335, 622, 658, 742
SseBI	AGGCCT	1 cut(s)	85
SspI	AATATT	2 cut(s)	394, 505
SspMI	CTAG	2 cut(s)	255, 749
StuI	AGGCCT	1 cut(s)	85
StyD4I	CCNGG	1 cut(s)	464
TaaI	ACNGT	4 cut(s)	65, 348, 521, 639
TaqI	TCGA	3 cut(s)	416, 459, 619
TasI	AATT	4 cut(s)	335, 622, 658, 742
TatI	WGTACW	2 cut(s)	251, 360
TfiI	GAWTC	3 cut(s)	290, 689, 766
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	2 cut(s)	106, 265
TseI	GCWGC	1 cut(s)	574
TspDTI	ATGAA	4 cut(s)	338, 396, 497, 546
TspRI	CASTG	2 cut(s)	106, 265
Van91I	CCANNNNNTGG	1 cut(s)	433
VpaK11BI	GGWCC	1 cut(s)	563
XapI	RAATTY	3 cut(s)	622, 658, 742
XbaI	TCTAGA	1 cut(s)	748
XhoI	CTCGAG	1 cut(s)	458
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	2 cut(s)	255, 749
ZrmI	AGTACT	1 cut(s)	253
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.