Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004850

Physical Location & Seq

Genomic Coordinates Forward (+)

66447341 .. 66447898

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020582

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGGGAAGAAAGTGAGCCAGACATCAGTGAAAATATCTAAGAAGGAGAAGAAGGAGTTTAACAGTTTGATTAGACTCTTGAGGCCTAAAGTCTACATCACTGACTGCTCAAGCTTCAAGACACTAGTGCAAGACCTCACTGGCAATGGAAGCTCAAATATCTCAATTACTACTTCCTCATCACACCCTCAGCAACAGCACAGAGTACCAGTTGTAGATGTTGAGGAGTATCAAGTAGAGCCTGAAAGGAGTACTAGTGTGGATGTCTCAACTGATGCATCATTTGATTCTTCTGAGCTGTGGAACCAAGAAATGTTTATACATGACCAAGAATTAAACCAACTGTGTTATCAGATGTATTCAGATGATACTACAACAACAAATATTTTAGAAGGTTCATCACCAACAGCAGACCAAATGGTGGATATGTTGCCATTTCAAGATCTTGAGTCATGGCTTTCGGGGACTGAGCCTTTTGATCCTTTCAACATTAATGGTTATGGTCAGATTGATCAAGGGGTCAGCATATTTGACTATGAGCTGTCAGGGCTACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

186

Amino Acids

20.85

Weight (kDa)

4.37

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004850)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30420 FvH4_6g38531 FvH4_6g38710
prunus_persica	Prupe.3G175400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0151791
rosa_laevigata	RLG00000020582 RLG00000027644 RLG00000028957 RLG00000034011
rosa_multiflora	Rmu_sc0000021.1_g000006 Rmu_sc0002042.1_g000004 Rmu_sc0005294.1_g000028 Rmu_sc0007589.1_g000005 Rmu_sc0007589.1_g000007
rosa_roxburghii	Rroxscaffold_1G00039800 Rroxscaffold_2G00096150 Rroxscaffold_4G00294120
rosa_rugosa	Rorug01G0168000 Rorug01G0298300 Rorug02G0429100 Rorug02G0431600 Rorug05G0188400
rosa_samantha	Rh1BG151700 Rh1DG183600 Rh2AG489900 Rh2CG476200 Rh2DG513600 Rh5AG274000 Rh5BG279000 Rh5CG311100 Rh5DG287200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	421
AccI	GTMKAC	1 cut(s)	93
AclWI	GGATC	1 cut(s)	473
AfaI	GTAC	2 cut(s)	207, 253
AfiI	CCNNNNNNNGG	1 cut(s)	421
AgsI	TTSAA	3 cut(s)	118, 440, 487
AhlI	ACTAGT	2 cut(s)	124, 254
AluBI	AGCT	4 cut(s)	114, 153, 298, 541
AluI	AGCT	4 cut(s)	114, 153, 298, 541
Alw26I	GTCTC	1 cut(s)	271
AlwI	GGATC	1 cut(s)	473
AoxI	GGCC	1 cut(s)	83
AseI	ATTAAT	1 cut(s)	492
AsuHPI	GGTGA	1 cut(s)	393
BbvCI	CCTCAGC	1 cut(s)	189
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	1 cut(s)	271
BcuI	ACTAGT	2 cut(s)	124, 254
BfaI	CTAG	2 cut(s)	125, 255
BglII	AGATCT	1 cut(s)	442
BmcAI	AGTACT	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	305
BmsI	GCATC	2 cut(s)	265, 287
Bpu10I	CCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	3 cut(s)	94, 100, 467
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	1 cut(s)	421
Bse1I	ACTGG	2 cut(s)	145, 209
Bse3DI	GCAATG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	421
BseMI	GCAATG	1 cut(s)	151
BseMII	CTCAG	3 cut(s)	203, 285, 459
BseNI	ACTGG	2 cut(s)	145, 209
BseRI	GAGGAG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	85
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	1 cut(s)	421
BsmAI	GTCTC	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	478
BsnI	GGCC	1 cut(s)	85
Bsp143I	GATC	3 cut(s)	442, 478, 511
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	3 cut(s)	202, 286, 460
BspLI	GGNNCC	1 cut(s)	305
BspPI	GGATC	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	151
BsrI	ACTGG	2 cut(s)	145, 209
BssMI	GATC	3 cut(s)	442, 478, 511
Bst4CI	ACNGT	2 cut(s)	65, 345
BstDEI	CTNAG	4 cut(s)	39, 189, 294, 468
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	3 cut(s)	445, 481, 514
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	3 cut(s)	442, 478, 511
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 547
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
BsuRI	GGCC	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	3 cut(s)	33, 99, 138
Csp6I	GTAC	2 cut(s)	206, 252
CviAII	CATG	2 cut(s)	323, 453
CviQI	GTAC	2 cut(s)	206, 252
DdeI	CTNAG	4 cut(s)	39, 189, 294, 468
DpnI	GATC	3 cut(s)	444, 480, 513
DpnII	GATC	3 cut(s)	442, 478, 511
Eco147I	AGGCCT	1 cut(s)	85
EcoT22I	ATGCAT	1 cut(s)	280
FaeI	CATG	2 cut(s)	326, 456
FaiI	YATR	8 cut(s)	320, 324, 428, 454, 501, 527, 537, 556
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	2 cut(s)	322, 452
FbaI	TGATCA	1 cut(s)	511
FblI	GTMKAC	1 cut(s)	93
FokI	GGATG	1 cut(s)	275
FspBI	CTAG	2 cut(s)	125, 255
HaeIII	GGCC	1 cut(s)	85
Hin1II	CATG	2 cut(s)	326, 456
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	3 cut(s)	75, 287, 449
HphI	GGTGA	1 cut(s)	393
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	4 cut(s)	295, 354, 364, 507
Hpy188III	TCNNGA	4 cut(s)	79, 118, 440, 446
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	3 cut(s)	37, 46, 386
HpyCH4III	ACNGT	2 cut(s)	65, 345
HpyCH4V	TGCA	2 cut(s)	130, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 547
HpyF3I	CTNAG	4 cut(s)	39, 189, 294, 468
Hsp92II	CATG	2 cut(s)	326, 456
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	3 cut(s)	442, 478, 511
LpnPI	CCDG	5 cut(s)	32, 126, 222, 255, 531
LweI	GCATC	2 cut(s)	265, 287
MaeI	CTAG	2 cut(s)	125, 255
MalI	GATC	3 cut(s)	444, 480, 513
MboI	GATC	3 cut(s)	442, 478, 511
MboII	GAAGA	3 cut(s)	19, 61, 282
MflI	RGATCY	1 cut(s)	442
MluCI	AATT	2 cut(s)	165, 332
MlyI	GAGTC	2 cut(s)	69, 458
MnlI	CCTC	5 cut(s)	75, 146, 187, 198, 217
Mph1103I	ATGCAT	1 cut(s)	280
MseI	TTAA	3 cut(s)	60, 335, 492
MwoI	GCNNNNNNNGC	2 cut(s)	150, 547
NdeII	GATC	3 cut(s)	442, 478, 511
NlaIII	CATG	2 cut(s)	326, 456
NlaIV	GGNNCC	1 cut(s)	305
NsiI	ATGCAT	1 cut(s)	280
PceI	AGGCCT	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	287
PflMI	CCANNNNNTGG	1 cut(s)	421
PleI	GAGTC	2 cut(s)	69, 457
PpsI	GAGTC	2 cut(s)	69, 457
PshBI	ATTAAT	1 cut(s)	492
PspN4I	GGNNCC	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	442
RsaI	GTAC	2 cut(s)	207, 253
RsaNI	GTAC	2 cut(s)	206, 252
SaqAI	TTAA	3 cut(s)	60, 335, 492
Sau3AI	GATC	3 cut(s)	442, 478, 511
ScaI	AGTACT	1 cut(s)	253
SchI	GAGTC	2 cut(s)	69, 458
SetI	ASST	6 cut(s)	116, 138, 155, 300, 397, 543
SfaNI	GCATC	2 cut(s)	265, 287
SmlI	CTYRAG	3 cut(s)	79, 109, 446
SmoI	CTYRAG	3 cut(s)	79, 109, 446
SpeI	ACTAGT	2 cut(s)	124, 254
Sse9I	AATT	2 cut(s)	165, 332
SseBI	AGGCCT	1 cut(s)	85
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	2 cut(s)	125, 255
StuI	AGGCCT	1 cut(s)	85
TaaI	ACNGT	2 cut(s)	65, 345
TasI	AATT	2 cut(s)	165, 332
TatI	WGTACW	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	3 cut(s)	60, 335, 492
Tru9I	TTAA	3 cut(s)	60, 335, 492
TscAI	CASTG	3 cut(s)	33, 106, 145
TspDTI	ATGAA	1 cut(s)	387
TspRI	CASTG	3 cut(s)	33, 106, 145
Van91I	CCANNNNNTGG	1 cut(s)	421
VspI	ATTAAT	1 cut(s)	492
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	2 cut(s)	125, 255
ZrmI	AGTACT	1 cut(s)	253
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.