Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004850

Physical Location & Seq

Genomic Coordinates Forward (+)

41426334 .. 41427491

Gene Structure 1158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0298300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGCCAACAATAATTGACGTACAAGATGATCAAGAACACAGCAAGACAATTGATTTGGGAAAAGATTCAATGACTGTGAATCGTCAAGCTAGTAATAATGACGACTTGTATGGAGTAATTGTGAATAGTGAGGAAGAAGCATACAACCTCTACTGTGAGTATGGTGCTAGAATGGGGTTTAGTGTTCGGATAATGCAGAGGAGGAAAAGCAACAACGTTGTGAGACAAGTTAATTATGCCTGTTCAAAAGAAGGTTTTAAACTAGATAGTGATCCTTCAGAAGTGAAAAAGGCTGATAGGTTGGACACTAGATCTGGCTGCACAGCAAAAATTCGATTTGGATTGCAAGATAATAATGTATGGAAAGCAACTCTCTTTGTTCCTGAACACAACCACAAGCTTGCAGAGCCAGAAGAAAGACCATTTTTGCGCTCCAATCAAAAAGTGTTAGAAGCTCATAAGGGGGTGATTAGATCAATGAAAAACGCAGGTATGAGTACCATAAATACATATTCATATTTAGCAGAAGAAGTTGGGGGATCTCAAAATGTTGGATTTACAAAGACTAATTGTTACAATTTTGTAAGCAGAGAGAGAATGATTATGCTAGAAGCAGGGGATGCTCAAAGCTTGATCAATTTATTTAAGAAAAAGCAAATTGAAGATCCTATGTTTTTCTACACCGTGCAAGTGGATCAAGAAAATCGAATGACAAATTTTTTCTGGAGAGATGGAAAGTCAAAAACCGACTTTGAATGCTTTGGGGACGTTATAGTATTTGATACTACTTACCGGACCAATAAATATAACATGATTTGTGCTCCTTTCGTTGGGGTTAACCAGCATTGTAAAAATGTGTTGTTTGGTTGTGCATTTTTGCTAGATGAGACGACTGCTTCATTTGTTTGGTTATTTGAGACATTCTTAGAAGCGATGGAAGGTAAAAAACCAAAGATTATCTTTACTGATCGATGTCAGGCAATGGCAAATGCTATTGAGAAGGTTTTTCCTGAGACACGCCATCGGTTATGTTTGTGGCACATATCAAAGAATGCGGTACAAAACTTGAATTGGCTTTATAGAAATCCTGATTTCAGTGAGCTTTTCAAGAAGTTTCTTTTTGGACGTGTGACAGAAGATGAATTTGAGTCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

385

Amino Acids

44.59

Weight (kDa)

6.43

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	50 - 135	2.4e-20	FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like	PF21056	224 - 340	2.8e-12	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE	PF10551	257 - 351	7.5e-33	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004850)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30420 FvH4_6g38531 FvH4_6g38710
prunus_persica	Prupe.3G175400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0151791
rosa_laevigata	RLG00000020582 RLG00000027644 RLG00000028957 RLG00000034011
rosa_multiflora	Rmu_sc0000021.1_g000006 Rmu_sc0002042.1_g000004 Rmu_sc0005294.1_g000028 Rmu_sc0007589.1_g000005 Rmu_sc0007589.1_g000007
rosa_roxburghii	Rroxscaffold_1G00039800 Rroxscaffold_2G00096150 Rroxscaffold_4G00294120
rosa_rugosa	Rorug01G0168000 Rorug01G0298300 Rorug02G0429100 Rorug02G0431600 Rorug05G0188400
rosa_samantha	Rh1BG151700 Rh1DG183600 Rh2AG489900 Rh2CG476200 Rh2DG513600 Rh5AG274000 Rh5BG279000 Rh5CG311100 Rh5DG287200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	479
AccI	GTMKAC	1 cut(s)	1151
AciI	CCGC	1 cut(s)	1055
AclI	AACGTT	1 cut(s)	216
AclWI	GGATC	4 cut(s)	266, 547, 659, 702
AcsI	RAATTY	3 cut(s)	330, 715, 1142
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	3 cut(s)	21, 499, 1059
AfiI	CCNNNNNNNGG	1 cut(s)	830
AflIII	ACRYGT	1 cut(s)	1126
AgsI	TTSAA	6 cut(s)	69, 246, 662, 755, 1069, 1108
AjiI	CACGTC	1 cut(s)	1127
AluBI	AGCT	5 cut(s)	89, 400, 455, 630, 1102
AluI	AGCT	5 cut(s)	89, 400, 455, 630, 1102
Alw21I	GWGCWC	1 cut(s)	823
Alw26I	GTCTC	4 cut(s)	217, 881, 911, 1007
AlwI	GGATC	4 cut(s)	266, 547, 659, 702
ApeKI	GCWGC	1 cut(s)	318
ApoI	RAATTY	3 cut(s)	330, 715, 1142
ArsI	GACNNNNNNTTYG	2 cut(s)	37, 69
Asp700I	GAANNNNTTC	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	795
AsuHPI	GGTGA	1 cut(s)	478
AvaII	GGWCC	1 cut(s)	795
Bbv12I	GWGCWC	1 cut(s)	823
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	3 cut(s)	725, 928, 1029
BclI	TGATCA	2 cut(s)	28, 633
BcoDI	GTCTC	4 cut(s)	217, 881, 911, 1007
BfaI	CTAG	6 cut(s)	90, 168, 263, 309, 608, 881
BfuAI	ACCTGC	1 cut(s)	479
BglII	AGATCT	1 cut(s)	311
BisI	GCNGC	1 cut(s)	319
BlsI	GCNGC	1 cut(s)	320
Bme18I	GGWCC	1 cut(s)	795
BmgBI	CACGTC	1 cut(s)	1127
BmgT120I	GGNCC	1 cut(s)	795
BmsI	GCATC	1 cut(s)	610
BpmI	CTGGAG	1 cut(s)	745
Bsa29I	ATCGAT	1 cut(s)	970
BsaBI	GATNNNNATC	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	792
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	1 cut(s)	830
Bse3DI	GCAATG	1 cut(s)	987
Bse8I	GATNNNNATC	1 cut(s)	270
BseCI	ATCGAT	1 cut(s)	970
BseGI	GGATG	1 cut(s)	625
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	830
BseMI	GCAATG	1 cut(s)	987
BseMII	CTCAG	1 cut(s)	1002
BseRI	GAGGAG	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	305
BsgI	GTGCAG	1 cut(s)	304
BshVI	ATCGAT	1 cut(s)	970
BsiHKAI	GWGCWC	1 cut(s)	823
BsiSI	CCGG	1 cut(s)	793
BslFI	GGGAC	1 cut(s)	779
BslI	CCNNNNNNNGG	1 cut(s)	830
BsmAI	GTCTC	4 cut(s)	217, 881, 911, 1007
BsmBI	CGTCTC	1 cut(s)	881
BsmFI	GGGAC	1 cut(s)	779
BsmI	GAATGC	2 cut(s)	761, 1057
Bsp1286I	GDGCHC	1 cut(s)	823
Bsp143I	GATC	9 cut(s)	28, 271, 311, 473, 539, 633, 664, 694, 967
BspACI	CCGC	1 cut(s)	1055
BspCNI	CTCAG	1 cut(s)	1003
BspDI	ATCGAT	1 cut(s)	970
BspMI	ACCTGC	1 cut(s)	479
BspPI	GGATC	4 cut(s)	266, 547, 659, 702
BsrDI	GCAATG	1 cut(s)	987
BssMI	GATC	9 cut(s)	28, 271, 311, 473, 539, 633, 664, 694, 967
Bst4CI	ACNGT	3 cut(s)	76, 155, 685
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	2 cut(s)	925, 1011
BstF5I	GGATG	1 cut(s)	625
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	9 cut(s)	31, 274, 314, 476, 542, 636, 667, 697, 970
BstMAI	GTCTC	4 cut(s)	217, 881, 911, 1007
BstMBI	GATC	9 cut(s)	28, 271, 311, 473, 539, 633, 664, 694, 967
BstMWI	GCNNNNNNNGC	2 cut(s)	406, 620
BstV1I	GCAGC	1 cut(s)	305
BstX2I	RGATCY	3 cut(s)	311, 539, 664
BstYI	RGATCY	3 cut(s)	311, 539, 664
Bsu15I	ATCGAT	1 cut(s)	970
BsuTUI	ATCGAT	1 cut(s)	970
BtgZI	GCGATG	1 cut(s)	947
BtrI	CACGTC	1 cut(s)	1127
BtsCI	GGATG	1 cut(s)	625
BtsIMutI	CAGTG	1 cut(s)	1102
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	1 cut(s)	402
CfoI	GCGC	1 cut(s)	432
Cfr13I	GGNCC	1 cut(s)	795
ClaI	ATCGAT	1 cut(s)	970
Csp6I	GTAC	3 cut(s)	20, 498, 1058
CviAII	CATG	1 cut(s)	811
CviJI	RGCY	9 cut(s)	89, 293, 318, 400, 409, 455, 630, 1075, 1102
CviKI_1	RGCY	9 cut(s)	89, 293, 318, 400, 409, 455, 630, 1075, 1102
CviQI	GTAC	3 cut(s)	20, 498, 1058
DdeI	CTNAG	2 cut(s)	925, 1011
DpnI	GATC	9 cut(s)	30, 273, 313, 475, 541, 635, 666, 696, 969
DpnII	GATC	9 cut(s)	28, 271, 311, 473, 539, 633, 664, 694, 967
DraI	TTTAAA	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	795
Eco57I	CTGAAG	1 cut(s)	261
Esp3I	CGTCTC	1 cut(s)	881
FaeI	CATG	1 cut(s)	814
FalI	AAGNNNNNCTT	2 cut(s)	944, 976
FaqI	GGGAC	1 cut(s)	779
FatI	CATG	1 cut(s)	810
FbaI	TGATCA	2 cut(s)	28, 633
FblI	GTMKAC	1 cut(s)	1151
Fnu4HI	GCNGC	1 cut(s)	319
FokI	GGATG	1 cut(s)	632
Fsp4HI	GCNGC	1 cut(s)	319
FspBI	CTAG	6 cut(s)	90, 168, 263, 309, 608, 881
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	1 cut(s)	319
GsuI	CTGGAG	1 cut(s)	745
HapII	CCGG	1 cut(s)	793
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	1 cut(s)	814
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HincII	GTYRAC	1 cut(s)	838
HindII	GTYRAC	1 cut(s)	838
HindIII	AAGCTT	2 cut(s)	398, 628
HinfI	GANTC	3 cut(s)	65, 79, 1148
HpaI	GTTAAC	1 cut(s)	838
HpaII	CCGG	1 cut(s)	793
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	2 cut(s)	838, 1152
Hpy188I	TCNGA	2 cut(s)	189, 280
Hpy188III	TCNNGA	7 cut(s)	32, 383, 698, 724, 1010, 1088, 1108
Hpy8I	GTNNAC	2 cut(s)	838, 1152
HpyAV	CCTTC	4 cut(s)	245, 285, 932, 994
HpyCH4III	ACNGT	3 cut(s)	76, 155, 685
HpyCH4IV	ACGT	4 cut(s)	18, 216, 768, 1126
HpyCH4V	TGCA	6 cut(s)	196, 321, 346, 404, 688, 872
HpyF10VI	GCNNNNNNNGC	2 cut(s)	406, 620
HpyF3I	CTNAG	2 cut(s)	925, 1011
HpySE526I	ACGT	4 cut(s)	18, 216, 768, 1126
Hsp92II	CATG	1 cut(s)	814
HspAI	GCGC	1 cut(s)	430
Ksp22I	TGATCA	2 cut(s)	28, 633
KspAI	GTTAAC	1 cut(s)	838
Kzo9I	GATC	9 cut(s)	28, 271, 311, 473, 539, 633, 664, 694, 967
LmnI	GCTCC	2 cut(s)	437, 826
Lsp1109I	GCAGC	1 cut(s)	305
LweI	GCATC	1 cut(s)	610
MaeI	CTAG	6 cut(s)	90, 168, 263, 309, 608, 881
MaeII	ACGT	4 cut(s)	18, 216, 768, 1126
MaeIII	GTNAC	2 cut(s)	572, 1129
MalI	GATC	9 cut(s)	30, 273, 313, 475, 541, 635, 666, 696, 969
MboI	GATC	9 cut(s)	28, 271, 311, 473, 539, 633, 664, 694, 967
MboII	GAAGA	5 cut(s)	146, 425, 539, 674, 1148
MfeI	CAATTG	1 cut(s)	48
MflI	RGATCY	3 cut(s)	311, 539, 664
MhlI	GDGCHC	1 cut(s)	823
MlyI	GAGTC	1 cut(s)	1157
MmeI	TCCRAC	2 cut(s)	282, 532
MnlI	CCTC	4 cut(s)	124, 158, 192, 195
MroXI	GAANNNNTTC	1 cut(s)	64
MseI	TTAA	4 cut(s)	231, 258, 645, 837
MspI	CCGG	1 cut(s)	793
MunI	CAATTG	1 cut(s)	48
Mva1269I	GAATGC	2 cut(s)	761, 1057
MwoI	GCNNNNNNNGC	2 cut(s)	406, 620
NdeII	GATC	9 cut(s)	28, 271, 311, 473, 539, 633, 664, 694, 967
NlaIII	CATG	1 cut(s)	814
NmuCI	GTSAC	1 cut(s)	1129
PctI	GAATGC	2 cut(s)	761, 1057
PdmI	GAANNNNTTC	1 cut(s)	64
PfeI	GAWTC	2 cut(s)	65, 79
PkrI	GCNGC	1 cut(s)	320
PleI	GAGTC	1 cut(s)	1156
PpsI	GAGTC	1 cut(s)	1156
Psp1406I	AACGTT	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	795
PsuI	RGATCY	3 cut(s)	311, 539, 664
RsaI	GTAC	3 cut(s)	21, 499, 1059
RsaNI	GTAC	3 cut(s)	20, 498, 1058
SaqAI	TTAA	4 cut(s)	231, 258, 645, 837
SatI	GCNGC	1 cut(s)	319
Sau3AI	GATC	9 cut(s)	28, 271, 311, 473, 539, 633, 664, 694, 967
Sau96I	GGNCC	1 cut(s)	795
SchI	GAGTC	1 cut(s)	1157
SduI	GDGCHC	1 cut(s)	823
SfaNI	GCATC	1 cut(s)	610
SinI	GGWCC	1 cut(s)	795
SsiI	CCGC	1 cut(s)	1055
SspMI	CTAG	6 cut(s)	90, 168, 263, 309, 608, 881
TaaI	ACNGT	3 cut(s)	76, 155, 685
TaiI	ACGT	4 cut(s)	21, 219, 771, 1129
TaqI	TCGA	3 cut(s)	334, 706, 970
TfiI	GAWTC	2 cut(s)	65, 79
Tru1I	TTAA	4 cut(s)	231, 258, 645, 837
Tru9I	TTAA	4 cut(s)	231, 258, 645, 837
TscAI	CASTG	1 cut(s)	1102
TseFI	GTSAC	1 cut(s)	1129
TseI	GCWGC	1 cut(s)	318
Tsp45I	GTSAC	1 cut(s)	1129
TspDTI	ATGAA	4 cut(s)	494, 504, 888, 1155
TspRI	CASTG	1 cut(s)	1102
VpaK11BI	GGWCC	1 cut(s)	795
XapI	RAATTY	3 cut(s)	330, 715, 1142
XmiI	GTMKAC	1 cut(s)	1151
XmnI	GAANNNNTTC	1 cut(s)	64
XspI	CTAG	6 cut(s)	90, 168, 263, 309, 608, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.