Rh5AG274000

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004850
Physical Location & Seq
Reverse (-)
36656127 .. 36663492
7366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG274000.1

Sequence Viewer

Length: 669 bp
ATGGGGAAGAAAGTAAGCCAAACATCAGTGAAAATATCTAAGAAAGAGAAGAAGGAGTTTAACAGTTTGATTAGACTCTTGAGGCCTAAAGTCTACATCACTGACTGCTCAAGCTTCAAGACCCTTGTGCAAGACCTCACCGGCAACGGAAGCTCTAATATCTCAATCGCTACTTCCTCATCACACCCTCAGCAACAGCACAGAGTACCAGTTGTAGATGTTGAGGAGTATCAAGTAGAGCCTGAAAGGAGTACTAGTGTTAGTAGCGTGGATGTCTCAACTGATGCAGCATTTGATTCTTCCGAGCTGTGGAACCAAGAAATGTTTATTAACGACCAAGAATTAAACCAACTGTGTTACCAGATGTATTCAGACGATACTACAACAACAAATATTTTAGAAGGTTCATCACCTTCAACAGCAGACCAAATGGTGGATGTGTTGCCATTTCATGATCTTGAGTCATGGCTTTTGGGCACTGAGCCTTTTGATCCTTTCAACATTAACGGTTATGGTCAGATTGATCAAGAGATAAAAACAACAAAGCGGGATAAACACCGGATGATCCAACAAGGACGACAGCAAGCACTTCAGCAACTTAGAGAACAGCTGCTTAGTAACAAAACTATGTCATTGTTATACGAGCTCAACTACGCGTTGGCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

222

Amino Acids

25.25

Weight (kDa)

4.91

Isoelectric Point (pI)

54.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 433
AccI GTMKAC 1 cut(s) 93
AccII CGCG 1 cut(s) 656
AciI CCGC 1 cut(s) 547
AclWI GGATC 2 cut(s) 485, 559
AcuI CTGAAG 1 cut(s) 575
AfaI GTAC 2 cut(s) 207, 253
AfiI CCNNNNNNNGG 2 cut(s) 309, 433
AflIII ACRYGT 1 cut(s) 654
AgsI TTSAA 3 cut(s) 118, 417, 499
AhlI ACTAGT 1 cut(s) 254
AluBI AGCT 5 cut(s) 114, 153, 307, 610, 646
AluI AGCT 5 cut(s) 114, 153, 307, 610, 646
Alw21I GWGCWC 1 cut(s) 648
Alw26I GTCTC 1 cut(s) 280
AlwI GGATC 2 cut(s) 485, 559
AoxI GGCC 1 cut(s) 83
ApeKI GCWGC 2 cut(s) 287, 610
AsuHPI GGTGA 2 cut(s) 130, 402
BaeGI GKGCMC 1 cut(s) 479
BanII GRGCYC 1 cut(s) 648
Bbv12I GWGCWC 1 cut(s) 648
BbvCI CCTCAGC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 299, 597
BclI TGATCA 1 cut(s) 523
BcoDI GTCTC 1 cut(s) 280
BcuI ACTAGT 1 cut(s) 254
BfaI CTAG 1 cut(s) 255
BisI GCNGC 2 cut(s) 288, 611
BlsI GCNGC 2 cut(s) 289, 612
BmcAI AGTACT 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 314
BmsI GCATC 1 cut(s) 274
Bpu10I CCTNAGC 1 cut(s) 189
BpuEI CTTGAG 3 cut(s) 94, 100, 479
BsaWI WCCGGW 1 cut(s) 558
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bsc4I CCNNNNNNNGG 2 cut(s) 309, 433
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 209
BseGI GGATG 3 cut(s) 277, 442, 567
BseLI CCNNNNNNNGG 2 cut(s) 309, 433
BseMII CTCAG 2 cut(s) 203, 471
BseNI ACTGG 1 cut(s) 209
BseRI GAGGAG 1 cut(s) 239
BseSI GKGCMC 1 cut(s) 479
BseXI GCAGC 2 cut(s) 299, 597
Bsh1236I CGCG 1 cut(s) 656
BshFI GGCC 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 648
BsiSI CCGG 2 cut(s) 141, 559
BslI CCNNNNNNNGG 2 cut(s) 309, 433
BsmAI GTCTC 1 cut(s) 280
BsnI GGCC 1 cut(s) 85
Bsp1286I GDGCHC 2 cut(s) 479, 648
Bsp143I GATC 4 cut(s) 454, 490, 523, 564
BspACI CCGC 1 cut(s) 547
BspANI GGCC 1 cut(s) 85
BspCNI CTCAG 2 cut(s) 202, 472
BspFNI CGCG 1 cut(s) 656
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 1 cut(s) 314
BspPI GGATC 2 cut(s) 485, 559
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 1 cut(s) 209
BssAI RCCGGY 1 cut(s) 140
BssMI GATC 4 cut(s) 454, 490, 523, 564
Bst4CI ACNGT 3 cut(s) 65, 354, 509
BstC8I GCNNGC 1 cut(s) 585
BstDEI CTNAG 5 cut(s) 39, 189, 480, 599, 614
BstF5I GGATG 3 cut(s) 277, 442, 567
BstFNI CGCG 1 cut(s) 656
BstKTI GATC 4 cut(s) 457, 493, 526, 567
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 4 cut(s) 454, 490, 523, 564
BstMWI GCNNNNNNNGC 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 479
BstUI CGCG 1 cut(s) 656
BstV1I GCAGC 2 cut(s) 299, 597
BsuRI GGCC 1 cut(s) 85
BtsCI GGATG 3 cut(s) 277, 442, 567
BtsIMutI CAGTG 3 cut(s) 33, 99, 477
Cac8I GCNNGC 1 cut(s) 585
CciI TCATGA 1 cut(s) 451
Cfr10I RCCGGY 1 cut(s) 140
Csp6I GTAC 2 cut(s) 206, 252
CviAII CATG 2 cut(s) 452, 465
CviQI GTAC 2 cut(s) 206, 252
DdeI CTNAG 5 cut(s) 39, 189, 480, 599, 614
DpnI GATC 4 cut(s) 456, 492, 525, 566
DpnII GATC 4 cut(s) 454, 490, 523, 564
Ecl136II GAGCTC 1 cut(s) 646
Eco147I AGGCCT 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 648
Eco53kI GAGCTC 1 cut(s) 646
Eco57I CTGAAG 1 cut(s) 575
EcoICRI GAGCTC 1 cut(s) 646
EcoT38I GRGCYC 1 cut(s) 648
FaeI CATG 2 cut(s) 455, 468
FaiI YATR 5 cut(s) 453, 466, 513, 629, 640
FatI CATG 2 cut(s) 451, 464
FauI CCCGC 1 cut(s) 540
FbaI TGATCA 1 cut(s) 523
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 2 cut(s) 288, 611
FokI GGATG 3 cut(s) 284, 449, 574
FriOI GRGCYC 1 cut(s) 648
Fsp4HI GCNGC 2 cut(s) 288, 611
FspBI CTAG 1 cut(s) 255
GluI GCNGC 2 cut(s) 288, 611
HaeIII GGCC 1 cut(s) 85
HapII CCGG 2 cut(s) 141, 559
Hin1II CATG 2 cut(s) 455, 468
HindIII AAGCTT 1 cut(s) 112
HinfI GANTC 3 cut(s) 75, 296, 461
HpaII CCGG 2 cut(s) 141, 559
HphI GGTGA 2 cut(s) 130, 402
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 3 cut(s) 304, 373, 519
Hpy188III TCNNGA 5 cut(s) 79, 118, 452, 458, 527
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 3 cut(s) 46, 395, 423
HpyCH4III ACNGT 3 cut(s) 65, 354, 509
HpyCH4V TGCA 2 cut(s) 130, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 150
HpyF3I CTNAG 5 cut(s) 39, 189, 480, 599, 614
Hsp92II CATG 2 cut(s) 455, 468
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 4 cut(s) 454, 490, 523, 564
LpnPI CCDG 5 cut(s) 154, 222, 255, 374, 572
Lsp1109I GCAGC 2 cut(s) 299, 597
LweI GCATC 1 cut(s) 274
MaeI CTAG 1 cut(s) 255
MaeIII GTNAC 2 cut(s) 356, 617
MalI GATC 4 cut(s) 456, 492, 525, 566
MboI GATC 4 cut(s) 454, 490, 523, 564
MboII GAAGA 3 cut(s) 19, 61, 291
MhlI GDGCHC 2 cut(s) 479, 648
MluCI AATT 1 cut(s) 341
MluI ACGCGT 1 cut(s) 654
MlyI GAGTC 2 cut(s) 69, 470
MmeI TCCRAC 1 cut(s) 592
MnlI CCTC 5 cut(s) 75, 146, 187, 198, 217
MseI TTAA 4 cut(s) 60, 330, 344, 504
MspA1I CMGCKG 1 cut(s) 610
MspI CCGG 2 cut(s) 141, 559
MvnI CGCG 1 cut(s) 656
MwoI GCNNNNNNNGC 1 cut(s) 150
NdeII GATC 4 cut(s) 454, 490, 523, 564
NlaIII CATG 2 cut(s) 455, 468
NlaIV GGNNCC 1 cut(s) 314
PagI TCATGA 1 cut(s) 451
PceI AGGCCT 1 cut(s) 85
PfeI GAWTC 1 cut(s) 296
PflMI CCANNNNNTGG 1 cut(s) 433
PkrI GCNGC 2 cut(s) 289, 612
PleI GAGTC 2 cut(s) 69, 469
PpsI GAGTC 2 cut(s) 69, 469
Psp124BI GAGCTC 1 cut(s) 648
PspN4I GGNNCC 1 cut(s) 314
PvuII CAGCTG 1 cut(s) 610
RsaI GTAC 2 cut(s) 207, 253
RsaNI GTAC 2 cut(s) 206, 252
SacI GAGCTC 1 cut(s) 648
SaqAI TTAA 4 cut(s) 60, 330, 344, 504
SatI GCNGC 2 cut(s) 288, 611
Sau3AI GATC 4 cut(s) 454, 490, 523, 564
ScaI AGTACT 1 cut(s) 253
SchI GAGTC 2 cut(s) 69, 470
SduI GDGCHC 2 cut(s) 479, 648
SetI ASST 8 cut(s) 116, 138, 155, 309, 406, 415, 612, 648
SfaNI GCATC 1 cut(s) 274
SmlI CTYRAG 3 cut(s) 79, 109, 458
SmoI CTYRAG 3 cut(s) 79, 109, 458
SpeI ACTAGT 1 cut(s) 254
Sse9I AATT 1 cut(s) 341
SseBI AGGCCT 1 cut(s) 85
SsiI CCGC 1 cut(s) 547
SspI AATATT 1 cut(s) 394
SspMI CTAG 1 cut(s) 255
SstI GAGCTC 1 cut(s) 648
StuI AGGCCT 1 cut(s) 85
TaaI ACNGT 3 cut(s) 65, 354, 509
TasI AATT 1 cut(s) 341
TatI WGTACW 1 cut(s) 251
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 4 cut(s) 60, 330, 344, 504
Tru9I TTAA 4 cut(s) 60, 330, 344, 504
TscAI CASTG 3 cut(s) 33, 106, 484
TseI GCWGC 2 cut(s) 287, 610
TspDTI ATGAA 2 cut(s) 396, 440
TspGWI ACGGA 1 cut(s) 162
TspRI CASTG 3 cut(s) 33, 106, 484
Van91I CCANNNNNTGG 1 cut(s) 433
XmiI GTMKAC 1 cut(s) 93
XspI CTAG 1 cut(s) 255
ZrmI AGTACT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.