Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004850

Physical Location & Seq

Genomic Coordinates Reverse (-)

14311530 .. 14312099

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00294120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGGGAAGAAAGTAAGCCAAACATCACTGAAAATATCTAAGAAAGAGAAGAAGGAGTTAAACAGTTTGATTAGACTCTTGAGGCCTAAAGTCTACATCACAGATTGCTCATGCTTCAAGACTCTTGTGCAAGACCTCACCGGCAATGGAAGCTCTAATATCTCAATCACTACTTCCTCATCACACCGTCACCAACAGCACAGAGTACCAGTTGTGGATGTTGAGGAGTGTCAAGTAGAGCCTGAAAGGAGTACTAGTGTCAGTAGTGTGGATATCTCAACTGATGCATCATTTGATTCTTCCGAGCTCTGGAACCAAGAAATGTTTATGAATGACCAAGAATTAAACCAACTGTGTTACGAGATGTATTCAGATGATACTACAACAATAAATAGTTTACAAGGTTCATCACCTTCAACAGCAGACCAAATGGCGGATGTGTTGCCATTTCAAGATCTTGAGTCATGGCTTTTGGGGACTGAGCCTTTTGATCCTTCCAACATTAATGGTTATGGTCAGATTGATCAAGAGGTCAGCATATTTGACTATGAGCTGTCAGGGCTACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

189

Amino Acids

21.19

Weight (kDa)

4.4

Isoelectric Point (pI)

50.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004850)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30420 FvH4_6g38531 FvH4_6g38710
prunus_persica	Prupe.3G175400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0151791
rosa_laevigata	RLG00000020582 RLG00000027644 RLG00000028957 RLG00000034011
rosa_multiflora	Rmu_sc0000021.1_g000006 Rmu_sc0002042.1_g000004 Rmu_sc0005294.1_g000028 Rmu_sc0007589.1_g000005 Rmu_sc0007589.1_g000007
rosa_roxburghii	Rroxscaffold_1G00039800 Rroxscaffold_2G00096150 Rroxscaffold_4G00294120
rosa_rugosa	Rorug01G0168000 Rorug01G0298300 Rorug02G0429100 Rorug02G0431600 Rorug05G0188400
rosa_samantha	Rh1BG151700 Rh1DG183600 Rh2AG489900 Rh2CG476200 Rh2DG513600 Rh5AG274000 Rh5BG279000 Rh5CG311100 Rh5DG287200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	1 cut(s)	434
AclWI	GGATC	1 cut(s)	485
AfaI	GTAC	2 cut(s)	207, 253
AfiI	CCNNNNNNNGG	2 cut(s)	309, 433
AgsI	TTSAA	3 cut(s)	118, 417, 452
AhlI	ACTAGT	1 cut(s)	254
AluBI	AGCT	3 cut(s)	153, 307, 553
AluI	AGCT	3 cut(s)	153, 307, 553
Alw21I	GWGCWC	1 cut(s)	309
AlwI	GGATC	1 cut(s)	485
AoxI	GGCC	1 cut(s)	83
AseI	ATTAAT	1 cut(s)	504
AsuHPI	GGTGA	3 cut(s)	130, 182, 402
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	309
BclI	TGATCA	1 cut(s)	523
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	1 cut(s)	255
BglII	AGATCT	1 cut(s)	454
BmcAI	AGTACT	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	314
BmsI	GCATC	2 cut(s)	274, 296
BpuEI	CTTGAG	2 cut(s)	100, 479
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	2 cut(s)	309, 433
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	151
BseGI	GGATG	2 cut(s)	223, 442
BseLI	CCNNNNNNNGG	2 cut(s)	309, 433
BseMI	GCAATG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	85
BsiHKAI	GWGCWC	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	490
BslI	CCNNNNNNNGG	2 cut(s)	309, 433
BsmFI	GGGAC	1 cut(s)	490
BsnI	GGCC	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	3 cut(s)	454, 490, 523
BspACI	CCGC	1 cut(s)	434
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	1 cut(s)	472
BspLI	GGNNCC	1 cut(s)	314
BspPI	GGATC	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	151
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	140
BssMI	GATC	3 cut(s)	454, 490, 523
Bst4CI	ACNGT	3 cut(s)	65, 188, 354
BstDEI	CTNAG	2 cut(s)	39, 480
BstF5I	GGATG	2 cut(s)	223, 442
BstKTI	GATC	3 cut(s)	457, 493, 526
BstMBI	GATC	3 cut(s)	454, 490, 523
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 559
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BsuRI	GGCC	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	223, 442
BtsIMutI	CAGTG	1 cut(s)	26
Cfr10I	RCCGGY	1 cut(s)	140
Csp6I	GTAC	2 cut(s)	206, 252
CviAII	CATG	2 cut(s)	111, 465
CviJI	RGCY	9 cut(s)	18, 85, 153, 241, 307, 469, 484, 553, 562
CviKI_1	RGCY	9 cut(s)	18, 85, 153, 241, 307, 469, 484, 553, 562
CviQI	GTAC	2 cut(s)	206, 252
DdeI	CTNAG	2 cut(s)	39, 480
DpnI	GATC	3 cut(s)	456, 492, 525
DpnII	GATC	3 cut(s)	454, 490, 523
EciI	GGCGGA	1 cut(s)	449
Ecl136II	GAGCTC	1 cut(s)	307
Eco147I	AGGCCT	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	309
Eco32I	GATATC	1 cut(s)	274
Eco53kI	GAGCTC	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	307
EcoRV	GATATC	1 cut(s)	274
EcoT22I	ATGCAT	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	309
FaeI	CATG	2 cut(s)	114, 468
FaiI	YATR	7 cut(s)	112, 329, 466, 513, 539, 549, 568
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	2 cut(s)	110, 464
FbaI	TGATCA	1 cut(s)	523
FblI	GTMKAC	1 cut(s)	93
FokI	GGATG	2 cut(s)	230, 449
FriOI	GRGCYC	1 cut(s)	309
FspBI	CTAG	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	85
HapII	CCGG	1 cut(s)	141
Hin1II	CATG	2 cut(s)	114, 468
HinfI	GANTC	4 cut(s)	75, 121, 296, 461
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	3 cut(s)	130, 182, 402
Hpy166II	GTNNAC	2 cut(s)	94, 398
Hpy188I	TCNGA	3 cut(s)	304, 373, 519
Hpy188III	TCNNGA	6 cut(s)	79, 118, 310, 452, 458, 527
Hpy8I	GTNNAC	2 cut(s)	94, 398
HpyAV	CCTTC	3 cut(s)	46, 423, 504
HpyCH4III	ACNGT	3 cut(s)	65, 188, 354
HpyCH4V	TGCA	2 cut(s)	130, 287
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 559
HpyF3I	CTNAG	2 cut(s)	39, 480
Hsp92II	CATG	2 cut(s)	114, 468
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	3 cut(s)	454, 490, 523
LpnPI	CCDG	5 cut(s)	154, 222, 255, 295, 543
LweI	GCATC	2 cut(s)	274, 296
MaeI	CTAG	1 cut(s)	255
MaeIII	GTNAC	2 cut(s)	188, 356
MalI	GATC	3 cut(s)	456, 492, 525
MboI	GATC	3 cut(s)	454, 490, 523
MboII	GAAGA	3 cut(s)	19, 61, 291
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	1 cut(s)	341
MlyI	GAGTC	3 cut(s)	69, 115, 470
MmeI	TCCRAC	1 cut(s)	522
MnlI	CCTC	5 cut(s)	75, 146, 187, 217, 523
Mph1103I	ATGCAT	1 cut(s)	289
MseI	TTAA	3 cut(s)	59, 344, 504
MspI	CCGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	150, 559
NdeII	GATC	3 cut(s)	454, 490, 523
NlaIII	CATG	2 cut(s)	114, 468
NlaIV	GGNNCC	1 cut(s)	314
NmuCI	GTSAC	1 cut(s)	188
NsiI	ATGCAT	1 cut(s)	289
PceI	AGGCCT	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	296
PleI	GAGTC	3 cut(s)	69, 115, 469
PpsI	GAGTC	3 cut(s)	69, 115, 469
PshBI	ATTAAT	1 cut(s)	504
Psp124BI	GAGCTC	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	454
RsaI	GTAC	2 cut(s)	207, 253
RsaNI	GTAC	2 cut(s)	206, 252
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	3 cut(s)	59, 344, 504
Sau3AI	GATC	3 cut(s)	454, 490, 523
ScaI	AGTACT	1 cut(s)	253
SchI	GAGTC	3 cut(s)	69, 115, 470
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	7 cut(s)	138, 155, 309, 406, 415, 534, 555
SfaNI	GCATC	2 cut(s)	274, 296
SmlI	CTYRAG	2 cut(s)	79, 458
SmoI	CTYRAG	2 cut(s)	79, 458
SpeI	ACTAGT	1 cut(s)	254
Sse9I	AATT	1 cut(s)	341
SseBI	AGGCCT	1 cut(s)	85
SsiI	CCGC	1 cut(s)	434
SspMI	CTAG	1 cut(s)	255
SstI	GAGCTC	1 cut(s)	309
StuI	AGGCCT	1 cut(s)	85
TaaI	ACNGT	3 cut(s)	65, 188, 354
TasI	AATT	1 cut(s)	341
TatI	WGTACW	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	3 cut(s)	59, 344, 504
Tru9I	TTAA	3 cut(s)	59, 344, 504
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	2 cut(s)	344, 396
TspRI	CASTG	1 cut(s)	33
VspI	ATTAAT	1 cut(s)	504
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	1 cut(s)	255
ZrmI	AGTACT	1 cut(s)	253
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.