Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005042

Physical Location & Seq

Genomic Coordinates Forward (+)

30788403 .. 30792771

Gene Structure 4369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g38930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTTCAACGTGTACAACCCTCTTGGTTCAGTTTTGAGCACAAAGCTCTTCAATTTCAGAGAGCCATTGACATTCTGTAGAATTGGGGGAGTGATGGCTATGCATGTTAGCAGTGCAGGGTTTTCTATTTTTAGTCACAGGAGAGTTAATAGAGTAAGAGCTGTTGCTTCTGAAAATGTGAGCATAGAGGAACAGAAGGTGCAATTGGGGGCTTCTGAGTTGAAGGTGACAAAGCTTGGGATTGGAGCTTGGTCTTGGGGTGACACCAGTTATTGGAACAACTTCGATTGGGATGATAGGAAAATGAAGGCTGCTAAGAATGCTTTTGATGCCAGCATTGATGGTGGCATTACCTTCTTTGATACTGCTGAAGTTTATGGCTCCAGGGCTTCTTTTGGCGCTATAAATTCTGAAACTTTACTAGGAAGATTTATCAAGGAAAGGAAAGAAAAGGATCCAGAAGTGGAGGTTGCTGTTGCAACCAAATTTGCAGCTTTGCCTTGGAGGCTGGGTCGTCAGAGCGTCCTCTCTGCCCTGAAGGGTTCCCTCAGTCGCCTTGGTCTTTCTTCAGTAGAACTGTATCAACTCCATTGGCCAGGAGTGTGGGGAAATGAAGGATATCTTGATGGTCTTGGAGATGCTGTTGAGCAAGGCCTTGTGAAGGCAGTTGGTGTCTCAAATTATAGAGAAAAGAGATTGCGTGATGCCTACGAGAAACTCAAAAAGAGAGGTATCCCCCTAGCGTCAAACCAGGTGAATTACAGCCTCATATACAGGGCACCAGAGGAGAATGGAGTTAAGGCTACCTGTGATGAACTTGGAATCACTTTGATTGCCTATTCACCTATTGCTCAAGGTGTTCTTACAGGAAAGTATACACCTGAAAACATTCCAACTGGCCCTCGAGGCCAAATTTACACTCGTGACTTTCTTACAAAGGTAAACCATATTTACTTATTCATCATTTTGAATGTCGATTACACAGTGCTGTTTTACAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

334

Amino Acids

37.09

Weight (kDa)

9.1

Isoelectric Point (pI)

25.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	78 - 298	1.8e-42	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06690
fragaria_vesca	FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930
malus_domestica	MD01G1007000.v1.1 MD09G1146100.v1.1 MD11G1199500.v1.1 MD17G1132700.v1.1
prunus_persica	Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1
pyrus_communis	pycom09g06640 pycom10g09970 pycom11g17240
rosa_chinensis	RchiOBHm_Chr2g0152501
rosa_laevigata	RLG00000020641
rosa_multiflora	Rmu_co8259875.1_g000001 Rmu_co8302601.1_g000001 Rmu_sc0014904.1_g000007
rosa_roxburghii	Rroxscaffold_5G00362420
rosa_rugosa	Rorug02G0433900
rosa_samantha	Rh1CG062100 Rh2AG495300 Rh2CG481400 Rh2DG518500
rosa_wichuraiana	Rw2G040750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	903
AccB1I	GGYRCC	1 cut(s)	778
AccB7I	CCANNNNNTGG	1 cut(s)	273
AccI	GTMKAC	1 cut(s)	875
AclWI	GGATC	2 cut(s)	449, 462
AcoI	YGGCCR	1 cut(s)	593
AcsI	RAATTY	3 cut(s)	406, 485, 912
AcuI	CTGAAG	3 cut(s)	390, 552, 557
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	2 cut(s)	273, 661
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	4 cut(s)	7, 52, 223, 970
AjnI	CCWGG	3 cut(s)	383, 595, 750
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	6 cut(s)	46, 161, 235, 248, 494, 999
AluI	AGCT	6 cut(s)	46, 161, 235, 248, 494, 999
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	1 cut(s)	679
AlwI	GGATC	2 cut(s)	449, 462
Ama87I	CYCGRG	1 cut(s)	903
AoxI	GGCC	4 cut(s)	593, 652, 898, 907
ApeKI	GCWGC	2 cut(s)	311, 491
ApoI	RAATTY	3 cut(s)	406, 485, 912
Asp700I	GAANNNNTTC	2 cut(s)	281, 888
AspLEI	GCGC	1 cut(s)	401
AspS9I	GGNCC	1 cut(s)	899
AsuHPI	GGTGA	4 cut(s)	238, 272, 766, 834
AvaI	CYCGRG	1 cut(s)	903
BaeGI	GKGCMC	1 cut(s)	781
BalI	TGGCCA	1 cut(s)	595
BamHI	GGATCC	1 cut(s)	454
BanI	GGYRCC	1 cut(s)	778
BauI	CACGAG	1 cut(s)	921
Bbv12I	GWGCWC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	298, 503
BccI	CCATC	3 cut(s)	88, 335, 620
BciT130I	CCWGG	3 cut(s)	385, 597, 752
BciVI	GTATCC	1 cut(s)	743
BcoDI	GTCTC	1 cut(s)	679
BfaI	CTAG	2 cut(s)	422, 740
BfmI	CTRYAG	1 cut(s)	76
BfoI	RGCGCY	1 cut(s)	402
BfuI	GTATCC	1 cut(s)	743
BglI	GCCNNNNNGGC	2 cut(s)	505, 906
BisI	GCNGC	2 cut(s)	312, 492
BlsI	GCNGC	2 cut(s)	313, 493
Bme1390I	CCNGG	3 cut(s)	385, 597, 752
BmeT110I	CYCGRG	1 cut(s)	903
BmgT120I	GGNCC	1 cut(s)	899
BmiI	GGNNCC	4 cut(s)	382, 456, 544, 780
BmrFI	CCNGG	3 cut(s)	385, 597, 752
BmsI	GCATC	3 cut(s)	319, 628, 694
BpmI	CTGGAG	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	837
BsaJI	CCNNGG	3 cut(s)	384, 500, 556
BsaXI	ACNNNNNCTCC	4 cut(s)	496, 526, 627, 657
Bsc4I	CCNNNNNNNGG	2 cut(s)	273, 661
Bse1I	ACTGG	2 cut(s)	267, 901
BseBI	CCWGG	3 cut(s)	385, 597, 752
BseDI	CCNNGG	3 cut(s)	384, 500, 556
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	2 cut(s)	273, 661
BseMII	CTCAG	2 cut(s)	207, 562
BseNI	ACTGG	2 cut(s)	267, 901
BseRI	GAGGAG	1 cut(s)	800
BseSI	GKGCMC	1 cut(s)	781
BseXI	GCAGC	2 cut(s)	298, 503
BseYI	CCCAGC	1 cut(s)	508
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	4 cut(s)	595, 654, 900, 909
BshNI	GGYRCC	1 cut(s)	778
BsiHKAI	GWGCWC	1 cut(s)	41
BsiHKCI	CYCGRG	1 cut(s)	903
BslI	CCNNNNNNNGG	2 cut(s)	273, 661
BsmAI	GTCTC	1 cut(s)	679
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	4 cut(s)	595, 654, 900, 909
BsoBI	CYCGRG	1 cut(s)	903
Bsp1286I	GDGCHC	2 cut(s)	41, 781
Bsp1407I	TGTACA	1 cut(s)	12
Bsp143I	GATC	1 cut(s)	454
BspANI	GGCC	4 cut(s)	595, 654, 900, 909
BspCNI	CTCAG	2 cut(s)	208, 561
BspLI	GGNNCC	4 cut(s)	382, 456, 544, 780
BspPI	GGATC	2 cut(s)	449, 462
BspQI	GCTCTTC	1 cut(s)	53
BspT107I	GGYRCC	1 cut(s)	778
BsrGI	TGTACA	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	267, 901
BssECI	CCNNGG	3 cut(s)	384, 500, 556
BssMI	GATC	1 cut(s)	454
BssNAI	GTATAC	1 cut(s)	876
BssSI	CACGAG	1 cut(s)	921
BssT1I	CCWWGG	2 cut(s)	500, 556
Bst1107I	GTATAC	1 cut(s)	876
Bst2BI	CACGAG	1 cut(s)	921
Bst2UI	CCWGG	3 cut(s)	385, 597, 752
Bst4CI	ACNGT	2 cut(s)	579, 985
Bst6I	CTCTTC	1 cut(s)	53
BstAUI	TGTACA	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	334
BstDEI	CTNAG	3 cut(s)	216, 315, 548
BstENI	CCTNNNNNAGG	1 cut(s)	659
BstF5I	GGATG	1 cut(s)	298
BstH2I	RGCGCY	1 cut(s)	402
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	1 cut(s)	457
BstMAI	GTCTC	1 cut(s)	679
BstMBI	GATC	1 cut(s)	454
BstMWI	GCNNNNNNNGC	4 cut(s)	320, 329, 505, 906
BstNI	CCWGG	3 cut(s)	385, 597, 752
BstNSI	RCATGY	1 cut(s)	107
BstSCI	CCNGG	3 cut(s)	383, 595, 750
BstSFI	CTRYAG	1 cut(s)	76
BstSLI	GKGCMC	1 cut(s)	781
BstV1I	GCAGC	2 cut(s)	298, 503
BstX2I	RGATCY	1 cut(s)	454
BstXI	CCANNNNNNTGG	1 cut(s)	603
BstYI	RGATCY	1 cut(s)	454
BstZ17I	GTATAC	1 cut(s)	876
BsuI	GTATCC	1 cut(s)	743
BsuRI	GGCC	4 cut(s)	595, 654, 900, 909
BtsCI	GGATG	1 cut(s)	298
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	2 cut(s)	118, 990
Cac8I	GCNNGC	1 cut(s)	334
CfoI	GCGC	1 cut(s)	401
Cfr13I	GGNCC	1 cut(s)	899
CseI	GACGC	2 cut(s)	511, 732
CsiI	ACCWGGT	1 cut(s)	750
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	1 cut(s)	104
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	3 cut(s)	216, 315, 548
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
EaeI	YGGCCR	1 cut(s)	593
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco130I	CCWWGG	2 cut(s)	500, 556
Eco147I	AGGCCT	1 cut(s)	654
Eco32I	GATATC	1 cut(s)	620
Eco57I	CTGAAG	3 cut(s)	390, 552, 557
Eco88I	CYCGRG	1 cut(s)	903
EcoNI	CCTNNNNNAGG	1 cut(s)	659
EcoRII	CCWGG	3 cut(s)	383, 595, 750
EcoRV	GATATC	1 cut(s)	620
EcoT14I	CCWWGG	2 cut(s)	500, 556
EcoT22I	ATGCAT	1 cut(s)	105
ErhI	CCWWGG	2 cut(s)	500, 556
FaeI	CATG	1 cut(s)	107
FalI	AAGNNNNNCTT	4 cut(s)	606, 638, 846, 878
FatI	CATG	1 cut(s)	103
FblI	GTMKAC	1 cut(s)	875
Fnu4HI	GCNGC	2 cut(s)	312, 492
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	2 cut(s)	312, 492
FspBI	CTAG	2 cut(s)	422, 740
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	2 cut(s)	312, 492
GsaI	CCCAGC	1 cut(s)	512
GsuI	CTGGAG	1 cut(s)	367
HaeII	RGCGCY	1 cut(s)	402
HaeIII	GGCC	4 cut(s)	595, 654, 900, 909
HgaI	GACGC	2 cut(s)	511, 732
HhaI	GCGC	1 cut(s)	401
Hin1II	CATG	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	1 cut(s)	822
HphI	GGTGA	4 cut(s)	238, 272, 766, 834
Hpy166II	GTNNAC	3 cut(s)	13, 876, 943
Hpy188I	TCNGA	5 cut(s)	59, 172, 217, 412, 519
Hpy188III	TCNNGA	3 cut(s)	458, 623, 923
Hpy8I	GTNNAC	3 cut(s)	13, 876, 943
HpyAV	CCTTC	7 cut(s)	190, 217, 301, 364, 532, 608, 655
HpyCH4III	ACNGT	2 cut(s)	579, 985
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	5 cut(s)	103, 116, 202, 479, 491
HpyF10VI	GCNNNNNNNGC	4 cut(s)	320, 329, 505, 906
HpyF3I	CTNAG	3 cut(s)	216, 315, 548
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	107
HspAI	GCGC	1 cut(s)	399
Kzo9I	GATC	1 cut(s)	454
LguI	GCTCTTC	1 cut(s)	53
LmnI	GCTCC	2 cut(s)	245, 386
Lsp1109I	GCAGC	2 cut(s)	298, 503
LweI	GCATC	3 cut(s)	319, 628, 694
MabI	ACCWGGT	1 cut(s)	750
MaeI	CTAG	2 cut(s)	422, 740
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	4 cut(s)	134, 226, 260, 923
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MboII	GAAGA	3 cut(s)	40, 438, 558
MfeI	CAATTG	1 cut(s)	203
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	2 cut(s)	41, 781
MlsI	TGGCCA	1 cut(s)	595
MluCI	AATT	8 cut(s)	52, 81, 203, 406, 485, 679, 757, 912
MluNI	TGGCCA	1 cut(s)	595
MmeI	TCCRAC	1 cut(s)	917
Mox20I	TGGCCA	1 cut(s)	595
Mph1103I	ATGCAT	1 cut(s)	105
MroXI	GAANNNNTTC	2 cut(s)	281, 888
MscI	TGGCCA	1 cut(s)	595
MseI	TTAA	2 cut(s)	147, 798
Msp20I	TGGCCA	1 cut(s)	595
MspR9I	CCNGG	3 cut(s)	385, 597, 752
MunI	CAATTG	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	325
MvaI	CCWGG	3 cut(s)	385, 597, 752
MwoI	GCNNNNNNNGC	4 cut(s)	320, 329, 505, 906
NdeII	GATC	1 cut(s)	454
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	4 cut(s)	382, 456, 544, 780
NmuCI	GTSAC	4 cut(s)	134, 226, 260, 923
NsiI	ATGCAT	1 cut(s)	105
NspI	RCATGY	1 cut(s)	107
PaeR7I	CTCGAG	1 cut(s)	903
PceI	AGGCCT	1 cut(s)	654
PciSI	GCTCTTC	1 cut(s)	53
PctI	GAATGC	1 cut(s)	325
PdmI	GAANNNNTTC	2 cut(s)	281, 888
PfeI	GAWTC	1 cut(s)	822
PflMI	CCANNNNNTGG	1 cut(s)	273
PkrI	GCNGC	2 cut(s)	313, 493
Psp6I	CCWGG	3 cut(s)	383, 595, 750
PspFI	CCCAGC	1 cut(s)	508
PspGI	CCWGG	3 cut(s)	383, 595, 750
PspN4I	GGNNCC	4 cut(s)	382, 456, 544, 780
PspPI	GGNCC	1 cut(s)	899
PspXI	VCTCGAGB	1 cut(s)	903
PsuI	RGATCY	1 cut(s)	454
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	53
SaqAI	TTAA	2 cut(s)	147, 798
SatI	GCNGC	2 cut(s)	312, 492
Sau3AI	GATC	1 cut(s)	454
Sau96I	GGNCC	1 cut(s)	899
ScrFI	CCNGG	3 cut(s)	385, 597, 752
SduI	GDGCHC	2 cut(s)	41, 781
SexAI	ACCWGGT	1 cut(s)	750
SfaNI	GCATC	3 cut(s)	319, 628, 694
SfcI	CTRYAG	1 cut(s)	76
SfiI	GGCCNNNNNGGCC	1 cut(s)	906
Sfr274I	CTCGAG	1 cut(s)	903
SlaI	CTCGAG	1 cut(s)	903
SmlI	CTYRAG	2 cut(s)	852, 903
SmoI	CTYRAG	2 cut(s)	852, 903
Sse9I	AATT	8 cut(s)	52, 81, 203, 406, 485, 679, 757, 912
SseBI	AGGCCT	1 cut(s)	654
SspMI	CTAG	2 cut(s)	422, 740
StuI	AGGCCT	1 cut(s)	654
StyD4I	CCNGG	3 cut(s)	383, 595, 750
StyI	CCWWGG	2 cut(s)	500, 556
TaaI	ACNGT	2 cut(s)	579, 985
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	3 cut(s)	285, 904, 975
TasI	AATT	8 cut(s)	52, 81, 203, 406, 485, 679, 757, 912
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	1 cut(s)	822
Tru1I	TTAA	2 cut(s)	147, 798
Tru9I	TTAA	2 cut(s)	147, 798
TscAI	CASTG	2 cut(s)	118, 990
TseFI	GTSAC	4 cut(s)	134, 226, 260, 923
TseI	GCWGC	2 cut(s)	311, 491
Tsp45I	GTSAC	4 cut(s)	134, 226, 260, 923
TspDTI	ATGAA	4 cut(s)	320, 627, 828, 949
TspRI	CASTG	2 cut(s)	118, 990
Van91I	CCANNNNNTGG	1 cut(s)	273
XagI	CCTNNNNNAGG	1 cut(s)	659
XapI	RAATTY	3 cut(s)	406, 485, 912
XceI	RCATGY	1 cut(s)	107
XhoI	CTCGAG	1 cut(s)	903
XmiI	GTMKAC	1 cut(s)	875
XmnI	GAANNNNTTC	2 cut(s)	281, 888
XspI	CTAG	2 cut(s)	422, 740
Zsp2I	ATGCAT	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.