Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005042

Physical Location & Seq

Genomic Coordinates Reverse (-)

12261851 .. 12281325

Gene Structure 19475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG062100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGAAGAGAGAAACAAACGTCACAGTTGGCAGCGCCATGGTGCACCCACTACGCTCTGGCGACTTTGACCATTTGAGATTGCATGATGCATATGAGAAACTCAAACGGAGAGGTATCCCACTAGCATTAAAGCAAGTGAATTACAGTCTTATATACAGGGTAGCAGAGGAGAATGGAGTTAAGGCTACTTGTGATGAACTTGCGATCACTTTGATTGTCTATTCACCTATTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

78

Amino Acids

8.8

Weight (kDa)

8.85

Isoelectric Point (pI)

33.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06690
fragaria_vesca	FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930
malus_domestica	MD01G1007000.v1.1 MD09G1146100.v1.1 MD11G1199500.v1.1 MD17G1132700.v1.1
prunus_persica	Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1
pyrus_communis	pycom09g06640 pycom10g09970 pycom11g17240
rosa_chinensis	RchiOBHm_Chr2g0152501
rosa_laevigata	RLG00000020641
rosa_multiflora	Rmu_co8259875.1_g000001 Rmu_co8302601.1_g000001 Rmu_sc0014904.1_g000007
rosa_roxburghii	Rroxscaffold_5G00362420
rosa_rugosa	Rorug02G0433900
rosa_samantha	Rh1CG062100 Rh2AG495300 Rh2CG481400 Rh2DG518500
rosa_wichuraiana	Rw2G040750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Alw21I	GWGCWC	1 cut(s)	45
Alw44I	GTGCAC	1 cut(s)	41
ApaLI	GTGCAC	1 cut(s)	41
ApeKI	GCWGC	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	216
BaeGI	GKGCMC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	42
BciVI	GTATCC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	122
BfoI	RGCGCY	1 cut(s)	36
BfuI	GTATCC	1 cut(s)	125
BisI	GCNGC	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	32
BmsI	GCATC	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	36
BseRI	GAGGAG	1 cut(s)	182
BseSI	GKGCMC	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	204
Bsp19I	CCATGG	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	25, 146
BstDSI	CCRYGG	1 cut(s)	36
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	204
BstSLI	GKGCMC	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	42
BsuI	GTATCC	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	36
CfoI	GCGC	1 cut(s)	35
CviAII	CATG	2 cut(s)	37, 83
CviJI	RGCY	1 cut(s)	185
CviKI_1	RGCY	1 cut(s)	185
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	36
EcoT22I	ATGCAT	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	2 cut(s)	40, 86
FaiI	YATR	6 cut(s)	38, 84, 91, 93, 152, 154
FatI	CATG	2 cut(s)	36, 82
FauNDI	CATATG	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	31
Fsp4HI	GCNGC	1 cut(s)	31
FspBI	CTAG	1 cut(s)	122
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	1 cut(s)	31
HaeII	RGCGCY	1 cut(s)	36
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	40, 86
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HphI	GGTGA	1 cut(s)	216
Hpy166II	GTNNAC	1 cut(s)	43
Hpy8I	GTNNAC	1 cut(s)	43
HpyCH4III	ACNGT	2 cut(s)	25, 146
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	3 cut(s)	43, 82, 89
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	40, 86
HspAI	GCGC	1 cut(s)	33
Kzo9I	GATC	1 cut(s)	204
LpnPI	CCDG	2 cut(s)	42, 142
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MboII	GAAGA	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	1 cut(s)	139
MnlI	CCTC	2 cut(s)	104, 160
Mph1103I	ATGCAT	1 cut(s)	91
MseI	TTAA	3 cut(s)	128, 180, 235
NcoI	CCATGG	1 cut(s)	36
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	2 cut(s)	40, 86
NmuCI	GTSAC	1 cut(s)	19
NsiI	ATGCAT	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	32
SaqAI	TTAA	3 cut(s)	128, 180, 235
SatI	GCNGC	1 cut(s)	31
Sau3AI	GATC	1 cut(s)	204
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	3 cut(s)	21, 115, 229
SfaNI	GCATC	1 cut(s)	76
SgeI	CNNG	8 cut(s)	49, 69, 95, 134, 146, 169, 201, 212
Sse9I	AATT	1 cut(s)	139
SspMI	CTAG	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	25, 146
TaiI	ACGT	1 cut(s)	21
TasI	AATT	1 cut(s)	139
Tru1I	TTAA	3 cut(s)	128, 180, 235
Tru9I	TTAA	3 cut(s)	128, 180, 235
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	30
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	2 cut(s)	17, 210
TspGWI	ACGGA	1 cut(s)	121
VneI	GTGCAC	1 cut(s)	41
XspI	CTAG	1 cut(s)	122
Zsp2I	ATGCAT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.