Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005042

Physical Location & Seq

Genomic Coordinates Forward (+)

28785411 .. 28788156

Gene Structure 2746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1199500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCATTATGTTTAGTAATAACTGCAGACAGGAAAATGAAAACGGCTAAAGCTACTTTCGATGTCAGTGTTGATGGTGGAATAACCTCCTTTGATACTGCTGAAGTGTACGGCTTCAGGGTGAGAAAAGCGTCTTATAGTTCTTTCTATAAAATTTGTTGCGGTCAAAACAAATTCATCATTATCTACTCTTGCAGGCTTCTTTTGGTGCTATTTATCAAGGTAAGGAAACAAAAGGATCCAGGAGTAGAGGTTGATGTCGCAACCAAATTCGCAGCTTTACCTTGGAGGCTGGGCCATCAAAATGACATAGCTGCCCTCAAGGATTCCCTCAATCGCCTGGAACTTTCTTCAGTGGAATTGTGTCAACTCCATTGGCCTGGAATATGGGGAAATGAAGGGTATCTCGATGGTCTTAGAGATGCTGTTGAGCAGGGCCTTGTGAAGGCTGTTGGTGTTTCCAACTATAGGGAAAAGCAATTGTGTGAGGCACACGCAAAACTTCAAAAGAGAGGTATCCCACTAGCATCAAATCAAGTGAATTACAGCCTCATATACAGGGCACTAGAGGAGAATGGAGTGAAGTCTACCTGTGATGAACTTGGGATCACTTTGATTGCCTATTCGCCTATTGCTCAAGCTCCAATCTCTGCTGAACTGGATCAAGGAAATAGGAGAAAGGTAGTCCTAAACTGGTTGATAGCCCAGGACAACGTTGTGCCAATCCCTGGAGCCAAAAATGCAAAACAGGCTACAGAATTTGCAGGTGTACTTGGATGGCGGCTCAACAGTGAAGTAGCCGAATTGCACGCTTTGGCTACAGAGATAAAACATGTTACTGGTTTCCCTGTTGAAAAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

288

Amino Acids

31.72

Weight (kDa)

8.74

Isoelectric Point (pI)

25.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	14 - 217	1.3e-25	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06690
fragaria_vesca	FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930
malus_domestica	MD01G1007000.v1.1 MD09G1146100.v1.1 MD11G1199500.v1.1 MD17G1132700.v1.1
prunus_persica	Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1
pyrus_communis	pycom09g06640 pycom10g09970 pycom11g17240
rosa_chinensis	RchiOBHm_Chr2g0152501
rosa_laevigata	RLG00000020641
rosa_multiflora	Rmu_co8259875.1_g000001 Rmu_co8302601.1_g000001 Rmu_sc0014904.1_g000007
rosa_roxburghii	Rroxscaffold_5G00362420
rosa_rugosa	Rorug02G0433900
rosa_samantha	Rh1CG062100 Rh2AG495300 Rh2CG481400 Rh2DG518500
rosa_wichuraiana	Rw2G040750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	862
AarI	CACCTGC	1 cut(s)	755
Acc36I	ACCTGC	1 cut(s)	755
AccB7I	CCANNNNNTGG	1 cut(s)	728
AccI	GTMKAC	1 cut(s)	587
AciI	CCGC	2 cut(s)	162, 781
AclI	AACGTT	1 cut(s)	714
AclWI	GGATC	4 cut(s)	233, 246, 614, 669
AcsI	RAATTY	4 cut(s)	153, 173, 269, 758
AcuI	CTGAAG	3 cut(s)	100, 123, 336
AfaI	GTAC	2 cut(s)	110, 771
AfiI	CCNNNNNNNGG	3 cut(s)	445, 468, 728
AflIII	ACRYGT	1 cut(s)	832
AgsI	TTSAA	2 cut(s)	506, 854
AjnI	CCWGG	5 cut(s)	241, 339, 379, 705, 727
AluBI	AGCT	4 cut(s)	53, 278, 314, 641
AluI	AGCT	4 cut(s)	53, 278, 314, 641
AlwI	GGATC	4 cut(s)	233, 246, 614, 669
AoxI	GGCC	3 cut(s)	295, 377, 436
ApeKI	GCWGC	2 cut(s)	275, 314
ApoI	RAATTY	4 cut(s)	153, 173, 269, 758
AspS9I	GGNCC	2 cut(s)	295, 436
AsuHPI	GGTGA	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	565
BamHI	GGATCC	1 cut(s)	238
BbvI	GCAGC	2 cut(s)	287, 301
BccI	CCATC	4 cut(s)	68, 306, 404, 771
BceAI	ACGGC	2 cut(s)	60, 127
BciT130I	CCWGG	5 cut(s)	243, 341, 381, 707, 729
BciVI	GTATCC	1 cut(s)	527
BfaI	CTAG	2 cut(s)	524, 566
BfmI	CTRYAG	4 cut(s)	24, 466, 753, 819
BfuAI	ACCTGC	1 cut(s)	755
BfuI	GTATCC	1 cut(s)	527
BisI	GCNGC	3 cut(s)	276, 315, 782
BlsI	GCNGC	3 cut(s)	277, 316, 783
Bme1390I	CCNGG	5 cut(s)	243, 341, 381, 707, 729
BmgT120I	GGNCC	2 cut(s)	295, 436
BmiI	GGNNCC	2 cut(s)	240, 733
BmrFI	CCNGG	5 cut(s)	243, 341, 381, 707, 729
BmsI	GCATC	2 cut(s)	412, 536
BpmI	CTGGAG	1 cut(s)	750
BpuEI	CTTGAG	2 cut(s)	305, 621
BsaJI	CCNNGG	3 cut(s)	284, 705, 727
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	3 cut(s)	445, 468, 728
Bse1I	ACTGG	3 cut(s)	663, 698, 844
BseBI	CCWGG	5 cut(s)	243, 341, 381, 707, 729
BseDI	CCNNGG	3 cut(s)	284, 705, 727
BseGI	GGATG	1 cut(s)	782
BseLI	CCNNNNNNNGG	3 cut(s)	445, 468, 728
BseNI	ACTGG	3 cut(s)	663, 698, 844
BseRI	GAGGAG	1 cut(s)	584
BseSI	GKGCMC	1 cut(s)	565
BseXI	GCAGC	2 cut(s)	287, 301
BseYI	CCCAGC	1 cut(s)	292
BshFI	GGCC	3 cut(s)	297, 379, 438
BslI	CCNNNNNNNGG	3 cut(s)	445, 468, 728
BsnI	GGCC	3 cut(s)	297, 379, 438
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp143I	GATC	3 cut(s)	238, 606, 661
BspACI	CCGC	2 cut(s)	162, 781
BspANI	GGCC	3 cut(s)	297, 379, 438
BspLI	GGNNCC	2 cut(s)	240, 733
BspMAI	CTGCAG	1 cut(s)	28
BspMI	ACCTGC	1 cut(s)	755
BspPI	GGATC	4 cut(s)	233, 246, 614, 669
BsrI	ACTGG	3 cut(s)	663, 698, 844
BssECI	CCNNGG	3 cut(s)	284, 705, 727
BssMI	GATC	3 cut(s)	238, 606, 661
BssT1I	CCWWGG	1 cut(s)	284
Bst2UI	CCWGG	5 cut(s)	243, 341, 381, 707, 729
Bst4CI	ACNGT	1 cut(s)	791
BstC8I	GCNNGC	2 cut(s)	197, 810
BstDEI	CTNAG	1 cut(s)	416
BstENI	CCTNNNNNAGG	1 cut(s)	443
BstF5I	GGATG	1 cut(s)	782
BstKTI	GATC	3 cut(s)	241, 609, 664
BstMBI	GATC	3 cut(s)	238, 606, 661
BstMWI	GCNNNNNNNGC	2 cut(s)	740, 749
BstNI	CCWGG	5 cut(s)	243, 341, 381, 707, 729
BstNSI	RCATGY	1 cut(s)	836
BstSCI	CCNGG	5 cut(s)	241, 339, 379, 705, 727
BstSFI	CTRYAG	4 cut(s)	24, 466, 753, 819
BstSLI	GKGCMC	1 cut(s)	565
BstV1I	GCAGC	2 cut(s)	287, 301
BstX2I	RGATCY	1 cut(s)	238
BstXI	CCANNNNNNTGG	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	238
BsuI	GTATCC	1 cut(s)	527
BsuRI	GGCC	3 cut(s)	297, 379, 438
BtsCI	GGATG	1 cut(s)	782
BtsIMutI	CAGTG	3 cut(s)	73, 360, 796
BveI	ACCTGC	1 cut(s)	755
Cac8I	GCNNGC	2 cut(s)	197, 810
Cfr13I	GGNCC	2 cut(s)	295, 436
CseI	GACGC	1 cut(s)	120
Csp6I	GTAC	2 cut(s)	109, 770
CviAII	CATG	1 cut(s)	833
CviQI	GTAC	2 cut(s)	109, 770
DdeI	CTNAG	1 cut(s)	416
DpnI	GATC	3 cut(s)	240, 608, 663
DpnII	GATC	3 cut(s)	238, 606, 661
Eco130I	CCWWGG	1 cut(s)	284
Eco57I	CTGAAG	3 cut(s)	100, 123, 336
EcoNI	CCTNNNNNAGG	1 cut(s)	443
EcoO109I	RGGNCCY	1 cut(s)	436
EcoRII	CCWGG	5 cut(s)	241, 339, 379, 705, 727
EcoT14I	CCWWGG	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	284
FaeI	CATG	1 cut(s)	836
FatI	CATG	1 cut(s)	832
FblI	GTMKAC	1 cut(s)	587
Fnu4HI	GCNGC	3 cut(s)	276, 315, 782
FokI	GGATG	1 cut(s)	789
Fsp4HI	GCNGC	3 cut(s)	276, 315, 782
FspBI	CTAG	2 cut(s)	524, 566
GluI	GCNGC	3 cut(s)	276, 315, 782
GsaI	CCCAGC	1 cut(s)	296
GsuI	CTGGAG	1 cut(s)	750
HaeIII	GGCC	3 cut(s)	297, 379, 438
HgaI	GACGC	1 cut(s)	120
Hin1II	CATG	1 cut(s)	836
HincII	GTYRAC	1 cut(s)	368
HindII	GTYRAC	1 cut(s)	368
HinfI	GANTC	1 cut(s)	326
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	4 cut(s)	109, 368, 588, 770
Hpy188III	TCNNGA	1 cut(s)	407
Hpy8I	GTNNAC	4 cut(s)	109, 368, 588, 770
HpyAV	CCTTC	2 cut(s)	392, 439
HpyCH4III	ACNGT	1 cut(s)	791
HpyCH4IV	ACGT	1 cut(s)	714
HpyCH4V	TGCA	5 cut(s)	26, 195, 743, 764, 808
HpyF10VI	GCNNNNNNNGC	2 cut(s)	740, 749
HpyF3I	CTNAG	1 cut(s)	416
HpySE526I	ACGT	1 cut(s)	714
Hsp92II	CATG	1 cut(s)	836
Kzo9I	GATC	3 cut(s)	238, 606, 661
LmnI	GCTCC	2 cut(s)	646, 731
Lsp1109I	GCAGC	2 cut(s)	287, 301
LweI	GCATC	2 cut(s)	412, 536
MaeI	CTAG	2 cut(s)	524, 566
MaeII	ACGT	1 cut(s)	714
MaeIII	GTNAC	1 cut(s)	835
MalI	GATC	3 cut(s)	240, 608, 663
MboI	GATC	3 cut(s)	238, 606, 661
MboII	GAAGA	1 cut(s)	342
MfeI	CAATTG	1 cut(s)	479
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	565
MluCI	AATT	9 cut(s)	153, 173, 269, 359, 479, 541, 758, 803, 857
MmeI	TCCRAC	1 cut(s)	486
MnlI	CCTC	9 cut(s)	97, 244, 282, 329, 341, 481, 506, 560, 562
MslI	CAYNNNNRTG	1 cut(s)	303
MspR9I	CCNGG	5 cut(s)	243, 341, 381, 707, 729
MunI	CAATTG	1 cut(s)	479
MvaI	CCWGG	5 cut(s)	243, 341, 381, 707, 729
MwoI	GCNNNNNNNGC	2 cut(s)	740, 749
NdeII	GATC	3 cut(s)	238, 606, 661
NlaIII	CATG	1 cut(s)	836
NlaIV	GGNNCC	2 cut(s)	240, 733
NspI	RCATGY	1 cut(s)	836
PaqCI	CACCTGC	1 cut(s)	755
PciI	ACATGT	1 cut(s)	832
PfeI	GAWTC	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	728
PfoI	TCCNGGA	1 cut(s)	241
PkrI	GCNGC	3 cut(s)	277, 316, 783
PscI	ACATGT	1 cut(s)	832
PsiI	TTATAA	1 cut(s)	862
Psp1406I	AACGTT	1 cut(s)	714
Psp6I	CCWGG	5 cut(s)	241, 339, 379, 705, 727
PspFI	CCCAGC	1 cut(s)	292
PspGI	CCWGG	5 cut(s)	241, 339, 379, 705, 727
PspN4I	GGNNCC	2 cut(s)	240, 733
PspPI	GGNCC	2 cut(s)	295, 436
PstI	CTGCAG	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	2 cut(s)	110, 771
RsaNI	GTAC	2 cut(s)	109, 770
RseI	CAYNNNNRTG	1 cut(s)	303
SatI	GCNGC	3 cut(s)	276, 315, 782
Sau3AI	GATC	3 cut(s)	238, 606, 661
Sau96I	GGNCC	2 cut(s)	295, 436
ScrFI	CCNGG	5 cut(s)	243, 341, 381, 707, 729
SduI	GDGCHC	1 cut(s)	565
SfaNI	GCATC	2 cut(s)	412, 536
SfcI	CTRYAG	4 cut(s)	24, 466, 753, 819
SmiMI	CAYNNNNRTG	1 cut(s)	303
SmlI	CTYRAG	2 cut(s)	320, 636
SmoI	CTYRAG	2 cut(s)	320, 636
Sse9I	AATT	9 cut(s)	153, 173, 269, 359, 479, 541, 758, 803, 857
SsiI	CCGC	2 cut(s)	162, 781
SspMI	CTAG	2 cut(s)	524, 566
StyD4I	CCNGG	5 cut(s)	241, 339, 379, 705, 727
StyI	CCWWGG	1 cut(s)	284
TaaI	ACNGT	1 cut(s)	791
TaiI	ACGT	1 cut(s)	717
TaqI	TCGA	2 cut(s)	60, 408
TasI	AATT	9 cut(s)	153, 173, 269, 359, 479, 541, 758, 803, 857
TatI	WGTACW	1 cut(s)	769
TauI	GCSGC	1 cut(s)	784
TfiI	GAWTC	1 cut(s)	326
TscAI	CASTG	3 cut(s)	73, 360, 796
TseI	GCWGC	2 cut(s)	275, 314
TspDTI	ATGAA	4 cut(s)	53, 166, 411, 612
TspRI	CASTG	3 cut(s)	73, 360, 796
Van91I	CCANNNNNTGG	1 cut(s)	728
XagI	CCTNNNNNAGG	1 cut(s)	443
XapI	RAATTY	4 cut(s)	153, 173, 269, 758
XceI	RCATGY	1 cut(s)	836
XmiI	GTMKAC	1 cut(s)	587
XspI	CTAG	2 cut(s)	524, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.