Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005042

Physical Location & Seq

Genomic Coordinates Forward (+)

66362714 .. 66367164

Gene Structure 4451 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G040750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCTATGCATGTTAGCAGTGCAGGGTTTTCTATTTTCAGTCACAGGAGAGTTAATAGAGTCAGAGCTGTTGCTTCTGAAAATGTGAGCATAGAGGAACAGAAGGTGAAGTTGGGGGCTTCTGAGTTGAAGGTGACAAAGCTTGGGATTGGAGCTTGGTCTTGGGGTGACACCAGTTATTGGAATAACTTTGAATGGGACGATAGGAAGATGAAGGCTGCTAAGAATGCTTTTGATGCCAGCATTGATGGTGGCATAACCTTCTTTGATACTGCTGAAGTTTATGGCTCCAGGGCTTCTTTCGGTGCTATAAATTCTGAAACTTTACTAGGAAGATTTATCAAGGAAAGGAAAGAAAAGGATCCAGAAGTGGAGGTTGCTGTTGCAACCAAATTCGCAGCTTTGCCTTGGAGGCTGGGTCGGCAGAGCGTCCTCTCTGCCCTCAAGGATTCCCTCAGTCGCCTCGGTCTTTCTTCAGTAGAACTGTATCAACTCCACTGGCCAGGAGTATGGGGAAATGAAGGATACCTTGATGGTCTTGGAGATGCTGTTGAGCAAGGTCTTGTGAAGGCAGTTGGTGTCTCAAACTATAGAGAAAAGAGATTGCGTGATGCATACGAGAAACTCAAAAAGAGAGGTATCCCACTAGCATCAAACCAAGTGAATTACAGCCTCATATACAGGGCACCAGAGGAGAATGGAGTTAAGGCTACCTGTGACGAACTTGGGATCACTTTGATTGCCTATTCACCTATTGCTCAAGGTGTTCTTACAGGAAAGTATACTCCTGAAAATATTCCAACTGGCCCTCGAGGCCAGATTTACACTCGTGATTTTCTTACAAAGCTCCAACCTCTGCTTAACAGAATCAAGGAAATAGGAGAGAAGTACAGTAAAACACCTACACAGGTAGCCTTAAACTGGCTAATAACCCAGGACAATGTCGTGCCGATTCCAGGAGCCAAAAATGCAGAACAGGCTATGGAATTTGCGGGTGCGCTTGGATGGAAGCTCAACGATGATGAAGTAACTGAGTTGCGCTCTTTGGCTTCCAAGATTACACCTGTAACTGGTTTCCCTGTTGAAAACTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

364

Amino Acids

40.25

Weight (kDa)

8.67

Isoelectric Point (pI)

26.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	47 - 349	2.9e-57	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06690
fragaria_vesca	FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930
malus_domestica	MD01G1007000.v1.1 MD09G1146100.v1.1 MD11G1199500.v1.1 MD17G1132700.v1.1
prunus_persica	Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1
pyrus_communis	pycom09g06640 pycom10g09970 pycom11g17240
rosa_chinensis	RchiOBHm_Chr2g0152501
rosa_laevigata	RLG00000020641
rosa_multiflora	Rmu_co8259875.1_g000001 Rmu_co8302601.1_g000001 Rmu_sc0014904.1_g000007
rosa_roxburghii	Rroxscaffold_5G00362420
rosa_rugosa	Rorug02G0433900
rosa_samantha	Rh1CG062100 Rh2AG495300 Rh2CG481400 Rh2DG518500
rosa_wichuraiana	Rw2G040750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	810
AccB1I	GGYRCC	1 cut(s)	685
AccB7I	CCANNNNNTGG	1 cut(s)	180
AccI	GTMKAC	1 cut(s)	782
AciI	CCGC	1 cut(s)	992
AclWI	GGATC	3 cut(s)	356, 369, 737
AcoI	YGGCCR	1 cut(s)	500
AcsI	RAATTY	3 cut(s)	313, 392, 986
AcuI	CTGAAG	2 cut(s)	297, 459
AfaI	GTAC	1 cut(s)	890
AfiI	CCNNNNNNNGG	4 cut(s)	180, 921, 956, 1070
AgsI	TTSAA	3 cut(s)	130, 194, 1085
AjnI	CCWGG	4 cut(s)	290, 502, 933, 955
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	6 cut(s)	68, 142, 155, 401, 847, 1012
AluI	AGCT	6 cut(s)	68, 142, 155, 401, 847, 1012
Alw26I	GTCTC	1 cut(s)	586
AlwI	GGATC	3 cut(s)	356, 369, 737
Ama87I	CYCGRG	1 cut(s)	810
AoxI	GGCC	3 cut(s)	500, 805, 814
ApeKI	GCWGC	2 cut(s)	218, 398
ApoI	RAATTY	3 cut(s)	313, 392, 986
Asp700I	GAANNNNTTC	1 cut(s)	795
AspLEI	GCGC	2 cut(s)	1000, 1041
AspS9I	GGNCC	1 cut(s)	806
AsuHPI	GGTGA	4 cut(s)	118, 145, 179, 741
AvaI	CYCGRG	1 cut(s)	810
BaeGI	GKGCMC	1 cut(s)	688
BalI	TGGCCA	1 cut(s)	502
BamHI	GGATCC	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	685
BauI	CACGAG	1 cut(s)	828
BbvI	GCAGC	2 cut(s)	205, 410
BccI	CCATC	3 cut(s)	242, 527, 999
BciT130I	CCWGG	4 cut(s)	292, 504, 935, 957
BciVI	GTATCC	2 cut(s)	518, 650
BcoDI	GTCTC	1 cut(s)	586
BfaI	CTAG	2 cut(s)	329, 647
BfmI	CTRYAG	1 cut(s)	589
BfuI	GTATCC	2 cut(s)	518, 650
BglI	GCCNNNNNGGC	2 cut(s)	412, 813
BisI	GCNGC	2 cut(s)	219, 399
BlsI	GCNGC	2 cut(s)	220, 400
Bme1390I	CCNGG	4 cut(s)	292, 504, 935, 957
BmeT110I	CYCGRG	1 cut(s)	810
BmgT120I	GGNCC	1 cut(s)	806
BmiI	GGNNCC	4 cut(s)	289, 363, 687, 961
BmrFI	CCNGG	4 cut(s)	292, 504, 935, 957
BmsI	GCATC	4 cut(s)	226, 535, 601, 659
BplI	GAGNNNNNCTC	2 cut(s)	1025, 1057
BpmI	CTGGAG	1 cut(s)	274
BpuEI	CTTGAG	2 cut(s)	428, 744
BsaJI	CCNNGG	4 cut(s)	291, 407, 463, 933
BsaXI	ACNNNNNCTCC	4 cut(s)	403, 433, 534, 564
Bsc4I	CCNNNNNNNGG	4 cut(s)	180, 921, 956, 1070
Bse1I	ACTGG	5 cut(s)	174, 503, 808, 926, 1075
BseBI	CCWGG	4 cut(s)	292, 504, 935, 957
BseDI	CCNNGG	4 cut(s)	291, 407, 463, 933
BseGI	GGATG	1 cut(s)	1010
BseLI	CCNNNNNNNGG	4 cut(s)	180, 921, 956, 1070
BseMII	CTCAG	3 cut(s)	114, 469, 1023
BseNI	ACTGG	5 cut(s)	174, 503, 808, 926, 1075
BseRI	GAGGAG	1 cut(s)	707
BseSI	GKGCMC	1 cut(s)	688
BseXI	GCAGC	2 cut(s)	205, 410
BseYI	CCCAGC	1 cut(s)	415
BsgI	GTGCAG	1 cut(s)	42
BshFI	GGCC	3 cut(s)	502, 807, 816
BshNI	GGYRCC	1 cut(s)	685
BsiHKCI	CYCGRG	1 cut(s)	810
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	4 cut(s)	180, 921, 956, 1070
BsmAI	GTCTC	1 cut(s)	586
BsmFI	GGGAC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	3 cut(s)	502, 807, 816
BsoBI	CYCGRG	1 cut(s)	810
Bsp1286I	GDGCHC	1 cut(s)	688
Bsp143I	GATC	2 cut(s)	361, 729
BspACI	CCGC	1 cut(s)	992
BspANI	GGCC	3 cut(s)	502, 807, 816
BspCNI	CTCAG	3 cut(s)	115, 468, 1024
BspLI	GGNNCC	4 cut(s)	289, 363, 687, 961
BspPI	GGATC	3 cut(s)	356, 369, 737
BspT107I	GGYRCC	1 cut(s)	685
BsrI	ACTGG	5 cut(s)	174, 503, 808, 926, 1075
BssECI	CCNNGG	4 cut(s)	291, 407, 463, 933
BssMI	GATC	2 cut(s)	361, 729
BssNAI	GTATAC	1 cut(s)	783
BssSI	CACGAG	1 cut(s)	828
BssT1I	CCWWGG	1 cut(s)	407
Bst1107I	GTATAC	1 cut(s)	783
Bst2BI	CACGAG	1 cut(s)	828
Bst2UI	CCWGG	4 cut(s)	292, 504, 935, 957
Bst4CI	ACNGT	2 cut(s)	486, 893
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	4 cut(s)	123, 222, 455, 1032
BstF5I	GGATG	1 cut(s)	1010
BstHHI	GCGC	2 cut(s)	1000, 1041
BstKTI	GATC	2 cut(s)	364, 732
BstMAI	GTCTC	1 cut(s)	586
BstMBI	GATC	2 cut(s)	361, 729
BstMWI	GCNNNNNNNGC	7 cut(s)	227, 236, 412, 421, 813, 968, 977
BstNI	CCWGG	4 cut(s)	292, 504, 935, 957
BstNSI	RCATGY	1 cut(s)	14
BstSCI	CCNGG	4 cut(s)	290, 502, 933, 955
BstSFI	CTRYAG	1 cut(s)	589
BstSLI	GKGCMC	1 cut(s)	688
BstV1I	GCAGC	2 cut(s)	205, 410
BstX2I	RGATCY	1 cut(s)	361
BstXI	CCANNNNNNTGG	1 cut(s)	510
BstYI	RGATCY	1 cut(s)	361
BstZ17I	GTATAC	1 cut(s)	783
BsuI	GTATCC	2 cut(s)	518, 650
BsuRI	GGCC	3 cut(s)	502, 807, 816
BtsCI	GGATG	1 cut(s)	1010
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	25, 496
Cac8I	GCNNGC	1 cut(s)	241
CfoI	GCGC	2 cut(s)	1000, 1041
Cfr13I	GGNCC	1 cut(s)	806
CseI	GACGC	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	889
CviAII	CATG	1 cut(s)	11
CviQI	GTAC	1 cut(s)	889
DdeI	CTNAG	4 cut(s)	123, 222, 455, 1032
DpnI	GATC	2 cut(s)	363, 731
DpnII	GATC	2 cut(s)	361, 729
EaeI	YGGCCR	1 cut(s)	500
Eco130I	CCWWGG	1 cut(s)	407
Eco57I	CTGAAG	2 cut(s)	297, 459
Eco88I	CYCGRG	1 cut(s)	810
EcoRII	CCWGG	4 cut(s)	290, 502, 933, 955
EcoT14I	CCWWGG	1 cut(s)	407
EcoT22I	ATGCAT	2 cut(s)	12, 616
ErhI	CCWWGG	1 cut(s)	407
FaeI	CATG	1 cut(s)	14
FalI	AAGNNNNNCTT	4 cut(s)	513, 545, 753, 785
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	1 cut(s)	10
FauI	CCCGC	1 cut(s)	985
FblI	GTMKAC	1 cut(s)	782
Fnu4HI	GCNGC	2 cut(s)	219, 399
FokI	GGATG	1 cut(s)	1017
Fsp4HI	GCNGC	2 cut(s)	219, 399
FspBI	CTAG	2 cut(s)	329, 647
GlaI	GCGC	2 cut(s)	999, 1040
GluI	GCNGC	2 cut(s)	219, 399
GsaI	CCCAGC	1 cut(s)	419
GsuI	CTGGAG	1 cut(s)	274
HaeIII	GGCC	3 cut(s)	502, 807, 816
HgaI	GACGC	1 cut(s)	418
HhaI	GCGC	2 cut(s)	1000, 1041
Hin1II	CATG	1 cut(s)	14
Hin6I	GCGC	2 cut(s)	998, 1039
HinP1I	GCGC	2 cut(s)	998, 1039
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	4 cut(s)	60, 449, 867, 952
HphI	GGTGA	4 cut(s)	118, 145, 179, 741
Hpy166II	GTNNAC	1 cut(s)	783
Hpy188I	TCNGA	4 cut(s)	65, 79, 124, 319
Hpy188III	TCNNGA	3 cut(s)	365, 788, 830
Hpy8I	GTNNAC	1 cut(s)	783
HpyAV	CCTTC	6 cut(s)	97, 124, 208, 271, 515, 562
HpyCH4III	ACNGT	2 cut(s)	486, 893
HpyCH4V	TGCA	5 cut(s)	10, 23, 386, 614, 971
HpyF10VI	GCNNNNNNNGC	7 cut(s)	227, 236, 412, 421, 813, 968, 977
HpyF3I	CTNAG	4 cut(s)	123, 222, 455, 1032
Hsp92II	CATG	1 cut(s)	14
HspAI	GCGC	2 cut(s)	998, 1039
Kzo9I	GATC	2 cut(s)	361, 729
LmnI	GCTCC	4 cut(s)	152, 293, 852, 959
Lsp1109I	GCAGC	2 cut(s)	205, 410
LweI	GCATC	4 cut(s)	226, 535, 601, 659
MaeI	CTAG	2 cut(s)	329, 647
MaeIII	GTNAC	6 cut(s)	41, 133, 167, 716, 1027, 1066
MalI	GATC	2 cut(s)	363, 731
MboI	GATC	2 cut(s)	361, 729
MboII	GAAGA	3 cut(s)	220, 345, 465
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	688
MlsI	TGGCCA	1 cut(s)	502
MluCI	AATT	4 cut(s)	313, 392, 664, 986
MluNI	TGGCCA	1 cut(s)	502
MlyI	GAGTC	1 cut(s)	69
MmeI	TCCRAC	2 cut(s)	824, 874
Mox20I	TGGCCA	1 cut(s)	502
Mph1103I	ATGCAT	2 cut(s)	12, 616
MroXI	GAANNNNTTC	1 cut(s)	795
MscI	TGGCCA	1 cut(s)	502
MseI	TTAA	4 cut(s)	54, 705, 861, 917
Msp20I	TGGCCA	1 cut(s)	502
MspR9I	CCNGG	4 cut(s)	292, 504, 935, 957
Mva1269I	GAATGC	1 cut(s)	232
MvaI	CCWGG	4 cut(s)	292, 504, 935, 957
MwoI	GCNNNNNNNGC	7 cut(s)	227, 236, 412, 421, 813, 968, 977
NdeII	GATC	2 cut(s)	361, 729
NlaIII	CATG	1 cut(s)	14
NlaIV	GGNNCC	4 cut(s)	289, 363, 687, 961
NmuCI	GTSAC	4 cut(s)	41, 133, 167, 716
NsiI	ATGCAT	2 cut(s)	12, 616
NspI	RCATGY	1 cut(s)	14
PaeR7I	CTCGAG	1 cut(s)	810
PctI	GAATGC	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	795
PfeI	GAWTC	3 cut(s)	449, 867, 952
PflFI	GACNNNGTC	1 cut(s)	941
PflMI	CCANNNNNTGG	1 cut(s)	180
PfoI	TCCNGGA	1 cut(s)	955
PkrI	GCNGC	2 cut(s)	220, 400
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
Psp6I	CCWGG	4 cut(s)	290, 502, 933, 955
PspFI	CCCAGC	1 cut(s)	415
PspGI	CCWGG	4 cut(s)	290, 502, 933, 955
PspN4I	GGNNCC	4 cut(s)	289, 363, 687, 961
PspPI	GGNCC	1 cut(s)	806
PspXI	VCTCGAGB	1 cut(s)	810
PsuI	RGATCY	1 cut(s)	361
PsyI	GACNNNGTC	1 cut(s)	941
RsaI	GTAC	1 cut(s)	890
RsaNI	GTAC	1 cut(s)	889
SaqAI	TTAA	4 cut(s)	54, 705, 861, 917
SatI	GCNGC	2 cut(s)	219, 399
Sau3AI	GATC	2 cut(s)	361, 729
Sau96I	GGNCC	1 cut(s)	806
SchI	GAGTC	1 cut(s)	69
ScrFI	CCNGG	4 cut(s)	292, 504, 935, 957
SduI	GDGCHC	1 cut(s)	688
SfaNI	GCATC	4 cut(s)	226, 535, 601, 659
SfcI	CTRYAG	1 cut(s)	589
SfiI	GGCCNNNNNGGCC	1 cut(s)	813
Sfr274I	CTCGAG	1 cut(s)	810
SlaI	CTCGAG	1 cut(s)	810
SmlI	CTYRAG	3 cut(s)	443, 759, 810
SmoI	CTYRAG	3 cut(s)	443, 759, 810
Sse9I	AATT	4 cut(s)	313, 392, 664, 986
SsiI	CCGC	1 cut(s)	992
SspI	AATATT	1 cut(s)	796
SspMI	CTAG	2 cut(s)	329, 647
StyD4I	CCNGG	4 cut(s)	290, 502, 933, 955
StyI	CCWWGG	1 cut(s)	407
TaaI	ACNGT	2 cut(s)	486, 893
TaqI	TCGA	1 cut(s)	811
TaqII	GACCGA	1 cut(s)	455
TasI	AATT	4 cut(s)	313, 392, 664, 986
TatI	WGTACW	1 cut(s)	888
TfiI	GAWTC	3 cut(s)	449, 867, 952
Tru1I	TTAA	4 cut(s)	54, 705, 861, 917
Tru9I	TTAA	4 cut(s)	54, 705, 861, 917
TscAI	CASTG	2 cut(s)	25, 503
TseFI	GTSAC	4 cut(s)	41, 133, 167, 716
TseI	GCWGC	2 cut(s)	218, 398
Tsp45I	GTSAC	4 cut(s)	41, 133, 167, 716
TspDTI	ATGAA	3 cut(s)	227, 534, 1038
TspRI	CASTG	2 cut(s)	25, 503
Tth111I	GACNNNGTC	1 cut(s)	941
Van91I	CCANNNNNTGG	1 cut(s)	180
XapI	RAATTY	3 cut(s)	313, 392, 986
XceI	RCATGY	1 cut(s)	14
XhoI	CTCGAG	1 cut(s)	810
XmiI	GTMKAC	1 cut(s)	782
XmnI	GAANNNNTTC	1 cut(s)	795
XspI	CTAG	2 cut(s)	329, 647
Zsp2I	ATGCAT	2 cut(s)	12, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.