Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005042

Physical Location & Seq

Genomic Coordinates Reverse (-)

13222116 .. 13224125

Gene Structure 2010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g09970.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCTATTGAGCTGGGCCTTGTGAAGGCTGTTGGTGTTTCCAACTACAGTGAAAAGCGATTGCGTGAGGCACACGCAAAACTTAAAAAGAGAGGTATCCCACTAGCATCAAATCAAGTGAATTACAGCCCCATATACAGGGCACCAGAAGAGAATGGAGTGAAGTCTACCTGTGATGAACTTGGGATCACTTTGATTGCCTATTCGCTTATTGCTCAAGGTGCTCTTACAAGAAAGTGTACACCTGAAAATCCCCCAACTGGCCCTCGAAGACAGATTTATACTCCTGAATTTCTTTCAAAGCTCCAATCTCTGCTGAACCGGATCAAGGAATTAGGAGAAAAGTACAGTAAAACAAACACACATGTAGTCCTAAACTGGTTGATAGCCCAGGACAACGTTGTGCCAATCCCAGGAGCCAAAAACGCAGAACAGGCTGCAGAATTCGCAGGTGCACTTAGATGGCGGCTCAACAGTGAAGAAGTATCCGAATTGCGCAATTTGGCTACAGAGATAAAACCTGTTACTGGTTTCCCTGTTGAAAAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

184

Amino Acids

20.28

Weight (kDa)

9.34

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06690
fragaria_vesca	FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930
malus_domestica	MD01G1007000.v1.1 MD09G1146100.v1.1 MD11G1199500.v1.1 MD17G1132700.v1.1
prunus_persica	Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1
pyrus_communis	pycom09g06640 pycom10g09970 pycom11g17240
rosa_chinensis	RchiOBHm_Chr2g0152501
rosa_laevigata	RLG00000020641
rosa_multiflora	Rmu_co8259875.1_g000001 Rmu_co8302601.1_g000001 Rmu_sc0014904.1_g000007
rosa_roxburghii	Rroxscaffold_5G00362420
rosa_rugosa	Rorug02G0433900
rosa_samantha	Rh1CG062100 Rh2AG495300 Rh2CG481400 Rh2DG518500
rosa_wichuraiana	Rw2G040750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	550
AarI	CACCTGC	1 cut(s)	440
Acc16I	TGCGCA	1 cut(s)	497
Acc36I	ACCTGC	1 cut(s)	440
AccB1I	GGYRCC	1 cut(s)	142
AccI	GTMKAC	1 cut(s)	167
AciI	CCGC	1 cut(s)	466
AclI	AACGTT	1 cut(s)	399
AclWI	GGATC	2 cut(s)	194, 332
AcsI	RAATTY	2 cut(s)	290, 443
AfaI	GTAC	2 cut(s)	241, 347
AfiI	CCNNNNNNNGG	6 cut(s)	25, 138, 260, 328, 413, 527
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	2 cut(s)	300, 542
AjnI	CCWGG	2 cut(s)	390, 412
AluBI	AGCT	2 cut(s)	13, 304
AluI	AGCT	2 cut(s)	13, 304
Alw21I	GWGCWC	2 cut(s)	226, 457
Alw44I	GTGCAC	1 cut(s)	453
AlwI	GGATC	2 cut(s)	194, 332
AoxI	GGCC	2 cut(s)	16, 262
ApaLI	GTGCAC	1 cut(s)	453
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	2 cut(s)	290, 443
AspLEI	GCGC	1 cut(s)	498
AspS9I	GGNCC	2 cut(s)	16, 263
BaeGI	GKGCMC	2 cut(s)	145, 457
BanI	GGYRCC	1 cut(s)	142
BbsI	GAAGAC	1 cut(s)	277
Bbv12I	GWGCWC	2 cut(s)	226, 457
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	1 cut(s)	456
BciT130I	CCWGG	2 cut(s)	392, 414
BciVI	GTATCC	2 cut(s)	107, 496
BfaI	CTAG	1 cut(s)	104
BfmI	CTRYAG	3 cut(s)	46, 438, 507
BfuAI	ACCTGC	1 cut(s)	440
BfuI	GTATCC	2 cut(s)	107, 496
BisI	GCNGC	2 cut(s)	438, 467
BlsI	GCNGC	2 cut(s)	439, 468
Bme1390I	CCNGG	2 cut(s)	392, 414
BmgT120I	GGNCC	2 cut(s)	16, 263
BmiI	GGNNCC	2 cut(s)	144, 418
BmrFI	CCNGG	2 cut(s)	392, 414
BmsI	GCATC	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	277
BpuEI	CTTGAG	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	390, 412
BsaWI	WCCGGW	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	6 cut(s)	25, 138, 260, 328, 413, 527
Bse1I	ACTGG	3 cut(s)	265, 383, 532
BseBI	CCWGG	2 cut(s)	392, 414
BseDI	CCNNGG	2 cut(s)	390, 412
BseLI	CCNNNNNNNGG	6 cut(s)	25, 138, 260, 328, 413, 527
BseNI	ACTGG	3 cut(s)	265, 383, 532
BseSI	GKGCMC	2 cut(s)	145, 457
BseXI	GCAGC	1 cut(s)	424
BseYI	CCCAGC	1 cut(s)	13
BshFI	GGCC	2 cut(s)	18, 264
BshNI	GGYRCC	1 cut(s)	142
BsiHKAI	GWGCWC	2 cut(s)	226, 457
BsiSI	CCGG	1 cut(s)	322
BslI	CCNNNNNNNGG	6 cut(s)	25, 138, 260, 328, 413, 527
BsnI	GGCC	2 cut(s)	18, 264
Bsp1286I	GDGCHC	3 cut(s)	145, 226, 457
Bsp1407I	TGTACA	1 cut(s)	239
Bsp143I	GATC	2 cut(s)	186, 324
BspACI	CCGC	1 cut(s)	466
BspANI	GGCC	2 cut(s)	18, 264
BspLI	GGNNCC	2 cut(s)	144, 418
BspMAI	CTGCAG	1 cut(s)	442
BspMI	ACCTGC	1 cut(s)	440
BspPI	GGATC	2 cut(s)	194, 332
BspT107I	GGYRCC	1 cut(s)	142
BsrGI	TGTACA	1 cut(s)	239
BsrI	ACTGG	3 cut(s)	265, 383, 532
BssECI	CCNNGG	2 cut(s)	390, 412
BssMI	GATC	2 cut(s)	186, 324
Bst2UI	CCWGG	2 cut(s)	392, 414
Bst4CI	ACNGT	3 cut(s)	50, 350, 476
Bst6I	CTCTTC	1 cut(s)	144
BstAUI	TGTACA	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	458
BstENI	CCTNNNNNAGG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	498
BstKTI	GATC	2 cut(s)	189, 327
BstMBI	GATC	2 cut(s)	186, 324
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 425, 434, 446
BstNI	CCWGG	2 cut(s)	392, 414
BstNSI	RCATGY	1 cut(s)	368
BstSCI	CCNGG	2 cut(s)	390, 412
BstSFI	CTRYAG	3 cut(s)	46, 438, 507
BstSLI	GKGCMC	2 cut(s)	145, 457
BstV1I	GCAGC	1 cut(s)	424
BstV2I	GAAGAC	1 cut(s)	277
BsuI	GTATCC	2 cut(s)	107, 496
BsuRI	GGCC	2 cut(s)	18, 264
BtsIMutI	CAGTG	2 cut(s)	55, 481
BveI	ACCTGC	1 cut(s)	440
CfoI	GCGC	1 cut(s)	498
Cfr13I	GGNCC	2 cut(s)	16, 263
Csp6I	GTAC	2 cut(s)	240, 346
CviAII	CATG	1 cut(s)	365
CviQI	GTAC	2 cut(s)	240, 346
DdeI	CTNAG	1 cut(s)	458
DpnI	GATC	2 cut(s)	188, 326
DpnII	GATC	2 cut(s)	186, 324
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
EcoNI	CCTNNNNNAGG	1 cut(s)	23
EcoRI	GAATTC	1 cut(s)	443
EcoRII	CCWGG	2 cut(s)	390, 412
FaeI	CATG	1 cut(s)	368
FaiI	YATR	5 cut(s)	134, 136, 282, 366, 550
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	1 cut(s)	364
FblI	GTMKAC	1 cut(s)	167
Fnu4HI	GCNGC	2 cut(s)	438, 467
Fsp4HI	GCNGC	2 cut(s)	438, 467
FspBI	CTAG	1 cut(s)	104
FspI	TGCGCA	1 cut(s)	497
GlaI	GCGC	1 cut(s)	497
GluI	GCNGC	2 cut(s)	438, 467
GsaI	CCCAGC	1 cut(s)	17
HaeIII	GGCC	2 cut(s)	18, 264
HapII	CCGG	1 cut(s)	322
HhaI	GCGC	1 cut(s)	498
Hin1II	CATG	1 cut(s)	368
Hin6I	GCGC	1 cut(s)	496
HinP1I	GCGC	1 cut(s)	496
HpaII	CCGG	1 cut(s)	322
Hpy166II	GTNNAC	4 cut(s)	168, 240, 242, 455
Hpy188I	TCNGA	1 cut(s)	490
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	4 cut(s)	168, 240, 242, 455
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	3 cut(s)	50, 350, 476
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	2 cut(s)	440, 455
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 425, 434, 446
HpyF3I	CTNAG	1 cut(s)	458
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	1 cut(s)	368
HspAI	GCGC	1 cut(s)	496
Kzo9I	GATC	2 cut(s)	186, 324
LmnI	GCTCC	2 cut(s)	309, 416
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	1 cut(s)	116
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	2 cut(s)	188, 326
MboI	GATC	2 cut(s)	186, 324
MboII	GAAGA	3 cut(s)	161, 282, 491
MhlI	GDGCHC	3 cut(s)	145, 226, 457
MluCI	AATT	7 cut(s)	121, 290, 332, 443, 491, 499, 545
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	3 cut(s)	61, 86, 276
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	460
MspI	CCGG	1 cut(s)	322
MspR9I	CCNGG	2 cut(s)	392, 414
MvaI	CCWGG	2 cut(s)	392, 414
MwoI	GCNNNNNNNGC	4 cut(s)	221, 425, 434, 446
NdeII	GATC	2 cut(s)	186, 324
NlaIII	CATG	1 cut(s)	368
NlaIV	GGNNCC	2 cut(s)	144, 418
NsbI	TGCGCA	1 cut(s)	497
NspI	RCATGY	1 cut(s)	368
PaqCI	CACCTGC	1 cut(s)	440
PciI	ACATGT	1 cut(s)	364
PkrI	GCNGC	2 cut(s)	439, 468
PscI	ACATGT	1 cut(s)	364
PsiI	TTATAA	1 cut(s)	550
Psp1406I	AACGTT	1 cut(s)	399
Psp6I	CCWGG	2 cut(s)	390, 412
PspFI	CCCAGC	1 cut(s)	13
PspGI	CCWGG	2 cut(s)	390, 412
PspN4I	GGNNCC	2 cut(s)	144, 418
PspPI	GGNCC	2 cut(s)	16, 263
PstI	CTGCAG	1 cut(s)	442
RsaI	GTAC	2 cut(s)	241, 347
RsaNI	GTAC	2 cut(s)	240, 346
RseI	CAYNNNNRTG	1 cut(s)	460
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	2 cut(s)	438, 467
Sau3AI	GATC	2 cut(s)	186, 324
Sau96I	GGNCC	2 cut(s)	16, 263
ScrFI	CCNGG	2 cut(s)	392, 414
SduI	GDGCHC	3 cut(s)	145, 226, 457
SetI	ASST	9 cut(s)	15, 97, 173, 223, 247, 306, 402, 454, 523
SfaNI	GCATC	1 cut(s)	116
SfcI	CTRYAG	3 cut(s)	46, 438, 507
SmiMI	CAYNNNNRTG	1 cut(s)	460
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
Sse9I	AATT	7 cut(s)	121, 290, 332, 443, 491, 499, 545
SsiI	CCGC	1 cut(s)	466
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	2 cut(s)	390, 412
TaaI	ACNGT	3 cut(s)	50, 350, 476
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	1 cut(s)	268
TasI	AATT	7 cut(s)	121, 290, 332, 443, 491, 499, 545
TatI	WGTACW	2 cut(s)	239, 345
TauI	GCSGC	1 cut(s)	469
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	2 cut(s)	55, 481
TseI	GCWGC	1 cut(s)	437
TspDTI	ATGAA	1 cut(s)	192
TspRI	CASTG	2 cut(s)	55, 481
VneI	GTGCAC	1 cut(s)	453
XagI	CCTNNNNNAGG	1 cut(s)	23
XapI	RAATTY	2 cut(s)	290, 443
XceI	RCATGY	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	167
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.