Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8302601.1

Orthogroup ID

OG0005042

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 868

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8302601.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 310 bp

ctgggaaagtatactcctgaaaatattccaactggccctcgaggccagatttacactcgtgattttcttacaaagctccaacctctgcttaacagaatcaaggaaataggagagaagtacagtaaaacacctacacaggtagccttaaactggctaataacccaggacaatgtcgtgccaattccaggagccaaaaatgcagaacaggctatggaatttgcgggtgcgcttggatggaagctcaacgatgatgaagtaactgagttgcgctctttggcttccgagattaaacctgtaactggtttccctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

103

Amino Acids

11.45

Weight (kDa)

6.48

Isoelectric Point (pI)

28.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06690
fragaria_vesca	FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930
malus_domestica	MD01G1007000.v1.1 MD09G1146100.v1.1 MD11G1199500.v1.1 MD17G1132700.v1.1
prunus_persica	Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1
pyrus_communis	pycom09g06640 pycom10g09970 pycom11g17240
rosa_chinensis	RchiOBHm_Chr2g0152501
rosa_laevigata	RLG00000020641
rosa_multiflora	Rmu_co8259875.1_g000001 Rmu_co8302601.1_g000001 Rmu_sc0014904.1_g000007
rosa_roxburghii	Rroxscaffold_5G00362420
rosa_rugosa	Rorug02G0433900
rosa_samantha	Rh1CG062100 Rh2AG495300 Rh2CG481400 Rh2DG518500
rosa_wichuraiana	Rw2G040750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	11
AciI	CCGC	1 cut(s)	221
AcsI	RAATTY	1 cut(s)	215
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	3 cut(s)	150, 185, 299
AjnI	CCWGG	2 cut(s)	162, 184
AluBI	AGCT	2 cut(s)	76, 241
AluI	AGCT	2 cut(s)	76, 241
Ama87I	CYCGRG	1 cut(s)	39
AoxI	GGCC	2 cut(s)	34, 43
ApoI	RAATTY	1 cut(s)	215
Asp700I	GAANNNNTTC	1 cut(s)	24
AspLEI	GCGC	2 cut(s)	229, 270
AspS9I	GGNCC	1 cut(s)	35
AvaI	CYCGRG	1 cut(s)	39
BauI	CACGAG	1 cut(s)	57
BccI	CCATC	1 cut(s)	228
BciT130I	CCWGG	2 cut(s)	164, 186
BglI	GCCNNNNNGGC	1 cut(s)	42
Bme1390I	CCNGG	2 cut(s)	164, 186
BmeT110I	CYCGRG	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	2 cut(s)	164, 186
BplI	GAGNNNNNCTC	2 cut(s)	254, 286
BsaJI	CCNNGG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 185, 299
Bse1I	ACTGG	3 cut(s)	37, 155, 304
BseBI	CCWGG	2 cut(s)	164, 186
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	239
BseLI	CCNNNNNNNGG	3 cut(s)	150, 185, 299
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	3 cut(s)	37, 155, 304
BshFI	GGCC	2 cut(s)	36, 45
BsiHKCI	CYCGRG	1 cut(s)	39
BslI	CCNNNNNNNGG	3 cut(s)	150, 185, 299
BsnI	GGCC	2 cut(s)	36, 45
BsoBI	CYCGRG	1 cut(s)	39
BspACI	CCGC	1 cut(s)	221
BspANI	GGCC	2 cut(s)	36, 45
BspCNI	CTCAG	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	190
BsrI	ACTGG	3 cut(s)	37, 155, 304
BssECI	CCNNGG	1 cut(s)	162
BssNAI	GTATAC	1 cut(s)	12
BssSI	CACGAG	1 cut(s)	57
Bst1107I	GTATAC	1 cut(s)	12
Bst2BI	CACGAG	1 cut(s)	57
Bst2UI	CCWGG	2 cut(s)	164, 186
Bst4CI	ACNGT	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	239
BstHHI	GCGC	2 cut(s)	229, 270
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 197, 206
BstNI	CCWGG	2 cut(s)	164, 186
BstSCI	CCNGG	2 cut(s)	162, 184
BstZ17I	GTATAC	1 cut(s)	12
BsuRI	GGCC	2 cut(s)	36, 45
BtsCI	GGATG	1 cut(s)	239
CfoI	GCGC	2 cut(s)	229, 270
Cfr13I	GGNCC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	118
CviJI	RGCY	9 cut(s)	36, 45, 76, 143, 154, 191, 209, 241, 278
CviKI_1	RGCY	9 cut(s)	36, 45, 76, 143, 154, 191, 209, 241, 278
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	39
EcoRII	CCWGG	2 cut(s)	162, 184
FaiI	YATR	2 cut(s)	12, 212
FauI	CCCGC	1 cut(s)	214
FblI	GTMKAC	1 cut(s)	11
FokI	GGATG	1 cut(s)	246
GlaI	GCGC	2 cut(s)	228, 269
HaeIII	GGCC	2 cut(s)	36, 45
HhaI	GCGC	2 cut(s)	229, 270
Hin6I	GCGC	2 cut(s)	227, 268
HinP1I	GCGC	2 cut(s)	227, 268
HinfI	GANTC	1 cut(s)	96
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	2 cut(s)	17, 59
Hpy8I	GTNNAC	1 cut(s)	12
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4V	TGCA	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 197, 206
HpyF3I	CTNAG	1 cut(s)	261
HspAI	GCGC	2 cut(s)	227, 268
LmnI	GCTCC	2 cut(s)	81, 188
MaeIII	GTNAC	2 cut(s)	256, 295
MluCI	AATT	2 cut(s)	180, 215
MmeI	TCCRAC	2 cut(s)	53, 103
MnlI	CCTC	3 cut(s)	35, 48, 93
MroXI	GAANNNNTTC	1 cut(s)	24
MseI	TTAA	3 cut(s)	90, 146, 288
MspR9I	CCNGG	2 cut(s)	164, 186
MvaI	CCWGG	2 cut(s)	164, 186
MwoI	GCNNNNNNNGC	3 cut(s)	42, 197, 206
NlaIV	GGNNCC	1 cut(s)	190
PaeR7I	CTCGAG	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	96
PflFI	GACNNNGTC	1 cut(s)	170
PfoI	TCCNGGA	1 cut(s)	184
Psp6I	CCWGG	2 cut(s)	162, 184
PspGI	CCWGG	2 cut(s)	162, 184
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	35
PspXI	VCTCGAGB	1 cut(s)	39
PsyI	GACNNNGTC	1 cut(s)	170
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SaqAI	TTAA	3 cut(s)	90, 146, 288
Sau96I	GGNCC	1 cut(s)	35
ScrFI	CCNGG	2 cut(s)	164, 186
SetI	ASST	6 cut(s)	78, 85, 133, 141, 243, 295
SfiI	GGCCNNNNNGGCC	1 cut(s)	42
Sfr274I	CTCGAG	1 cut(s)	39
SlaI	CTCGAG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	2 cut(s)	180, 215
SsiI	CCGC	1 cut(s)	221
SspI	AATATT	1 cut(s)	25
StyD4I	CCNGG	2 cut(s)	162, 184
TaaI	ACNGT	1 cut(s)	122
TaqI	TCGA	1 cut(s)	40
TasI	AATT	2 cut(s)	180, 215
TatI	WGTACW	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	3 cut(s)	90, 146, 288
Tru9I	TTAA	3 cut(s)	90, 146, 288
TspDTI	ATGAA	1 cut(s)	267
Tth111I	GACNNNGTC	1 cut(s)	170
XapI	RAATTY	1 cut(s)	215
XhoI	CTCGAG	1 cut(s)	39
XmiI	GTMKAC	1 cut(s)	11
XmnI	GAANNNNTTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.