Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005042

Physical Location & Seq

Genomic Coordinates Reverse (-)

55519186 .. 55520136

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0433900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCATAAAAAACTTCTGACTAATGTCCAAAGAGCTAGAAGAGGCTTCACACTGGATCCTTCATGCCCTATATGCCATATGGAGGAGGAAACTATCTTGCACATGCTCAGAGATTGTCCTAGAGCATCTGCCATTTGGAGAGCCTTTCTCAAACCGGGTAACATTCTCAACTCTTTCTCTCTTGATTGGAATGGTTGGATTGCTGCTGAAATTCATTGTCAAACTGTCATTCAAAAGAATGTGAAATGGTGCAGTCTCTTTGTTTTCATTTGTTGGTTCATATGGAAATGGAGGAATAAGGCTGTTTTTGATCCCAGTTTTGCTATGCCTACCTGCCCTAGAAAAGTTATCTGGAACTATGCAGATGAGTGGACTAGTGTCAATCTCAGGAAAAATGTTGATTCTATTTTCAGTAGTGTTTATCTTGCTTGGCAAAAACCTGCTGATAATTTCTATAAGTTAAATGTGGATGGGACTAGGAGCTCATCTTCTGGTAAGATTGGAGCTGGAGGTGTGATCAGGGATAAATTTGGCAACTGGATTTCTGGATTTCAAGTCAACTTAGGCATTGGTGCTATCCTTGATGCTGAGGCCTGGGGTCTTTACTTTGGGCTTAAAATGGCTGCTAACTTGCAGATCCCTCAACTGGAGGTTGAGTCTGACTCTGCGGTCCTGGTTCAGCTGATCCAATGTGCTGAGCTTGACACTCACCCTCTTGGTACTTTATTGATTGGTTCCTTGAACTACATGAAGAGCATGGGAATGGCTCATATCTGCCACATCTTCAGGGAATGTAATATGACCGTAGATGCCTTAGCCAAAGACAGTATTAATCATGAGCTTGGTCTTATTGCTCTTGATAGCCCTCCCCTGCATGCCTCTCAGTTCTACCTTGATGACATAGCCTCTGTGTCTAGAGCTAGAAAGAGTGCTTGTGTTAATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

315

Amino Acids

35.46

Weight (kDa)

8.26

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	2 - 46	3.6e-08	zinc-binding in reverse transcriptase
RVT_3	PF13456	155 - 275	1.4e-21	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06690
fragaria_vesca	FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930
malus_domestica	MD01G1007000.v1.1 MD09G1146100.v1.1 MD11G1199500.v1.1 MD17G1132700.v1.1
prunus_persica	Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1
pyrus_communis	pycom09g06640 pycom10g09970 pycom11g17240
rosa_chinensis	RchiOBHm_Chr2g0152501
rosa_laevigata	RLG00000020641
rosa_multiflora	Rmu_co8259875.1_g000001 Rmu_co8302601.1_g000001 Rmu_sc0014904.1_g000007
rosa_roxburghii	Rroxscaffold_5G00362420
rosa_rugosa	Rorug02G0433900
rosa_samantha	Rh1CG062100 Rh2AG495300 Rh2CG481400 Rh2DG518500
rosa_wichuraiana	Rw2G040750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	668
Acc36I	ACCTGC	2 cut(s)	341, 448
AciI	CCGC	1 cut(s)	668
AclWI	GGATC	5 cut(s)	50, 63, 305, 631, 679
AcsI	RAATTY	2 cut(s)	210, 527
AcuI	CTGAAG	1 cut(s)	769
AfaI	GTAC	1 cut(s)	721
AfiI	CCNNNNNNNGG	2 cut(s)	82, 646
AgsI	TTSAA	3 cut(s)	233, 554, 742
AhlI	ACTAGT	1 cut(s)	374
AjnI	CCWGG	2 cut(s)	593, 672
AluBI	AGCT	7 cut(s)	35, 483, 506, 682, 700, 841, 920
AluI	AGCT	7 cut(s)	35, 483, 506, 682, 700, 841, 920
Alw21I	GWGCWC	1 cut(s)	485
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	5 cut(s)	50, 63, 305, 631, 679
AoxI	GGCC	1 cut(s)	591
ApeKI	GCWGC	2 cut(s)	203, 623
ApoI	RAATTY	2 cut(s)	210, 527
AseI	ATTAAT	1 cut(s)	831
AspS9I	GGNCC	1 cut(s)	670
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	701
AvaII	GGWCC	1 cut(s)	670
BamHI	GGATCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	485
Bbv12I	GWGCWC	1 cut(s)	485
BbvCI	CCTCAGC	1 cut(s)	588
BbvI	GCAGC	2 cut(s)	190, 610
BccI	CCATC	1 cut(s)	464
BciT130I	CCWGG	2 cut(s)	595, 674
BclI	TGATCA	1 cut(s)	516
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	260
BcuI	ACTAGT	1 cut(s)	374
BfaI	CTAG	7 cut(s)	36, 120, 339, 375, 477, 915, 921
BfuAI	ACCTGC	2 cut(s)	341, 448
BisI	GCNGC	2 cut(s)	204, 624
BlpI	GCTNAGC	1 cut(s)	696
BlsI	GCNGC	2 cut(s)	205, 625
Bme1390I	CCNGG	3 cut(s)	156, 595, 674
Bme18I	GGWCC	1 cut(s)	670
BmgT120I	GGNCC	1 cut(s)	670
BmiI	GGNNCC	2 cut(s)	57, 736
BmrFI	CCNGG	3 cut(s)	156, 595, 674
BmrI	ACTGGG	1 cut(s)	309
BmsI	GCATC	3 cut(s)	134, 574, 799
BmuI	ACTGGG	1 cut(s)	309
BoxI	GACNNNNGTC	2 cut(s)	23, 377
BplI	GAGNNNNNCTC	4 cut(s)	132, 164, 647, 679
BpmI	CTGGAG	2 cut(s)	528, 668
Bpu10I	CCTNAGC	2 cut(s)	588, 814
Bpu1102I	GCTNAGC	1 cut(s)	696
BpuMI	CCSGG	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	594
BsaXI	ACNNNNNCTCC	2 cut(s)	641, 671
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 646
Bse1I	ACTGG	4 cut(s)	57, 315, 542, 651
BseBI	CCWGG	2 cut(s)	595, 674
BseDI	CCNNGG	1 cut(s)	594
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	2 cut(s)	82, 646
BseMII	CTCAG	5 cut(s)	121, 400, 579, 687, 896
BseNI	ACTGG	4 cut(s)	57, 315, 542, 651
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	2 cut(s)	190, 610
BsgI	GTGCAG	1 cut(s)	271
BshFI	GGCC	1 cut(s)	593
BsiHKAI	GWGCWC	1 cut(s)	485
BsiSI	CCGG	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	487
BslI	CCNNNNNNNGG	2 cut(s)	82, 646
BsmAI	GTCTC	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	487
BsnI	GGCC	1 cut(s)	593
Bsp1286I	GDGCHC	1 cut(s)	485
Bsp143I	GATC	5 cut(s)	55, 310, 516, 636, 684
Bsp1720I	GCTNAGC	1 cut(s)	696
BspACI	CCGC	1 cut(s)	668
BspANI	GGCC	1 cut(s)	593
BspCNI	CTCAG	5 cut(s)	120, 399, 580, 688, 895
BspHI	TCATGA	1 cut(s)	835
BspLI	GGNNCC	2 cut(s)	57, 736
BspMI	ACCTGC	2 cut(s)	341, 448
BspPI	GGATC	5 cut(s)	50, 63, 305, 631, 679
BspQI	GCTCTTC	1 cut(s)	746
BsrI	ACTGG	4 cut(s)	57, 315, 542, 651
BssECI	CCNNGG	1 cut(s)	594
BssMI	GATC	5 cut(s)	55, 310, 516, 636, 684
Bst2UI	CCWGG	2 cut(s)	595, 674
Bst4CI	ACNGT	3 cut(s)	226, 805, 827
Bst6I	CTCTTC	2 cut(s)	34, 746
BstC8I	GCNNGC	1 cut(s)	876
BstDEI	CTNAG	8 cut(s)	107, 386, 562, 588, 696, 814, 882, 945
BstF5I	GGATG	1 cut(s)	475
BstKTI	GATC	5 cut(s)	58, 313, 519, 639, 687
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	5 cut(s)	55, 310, 516, 636, 684
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstNI	CCWGG	2 cut(s)	595, 674
BstNSI	RCATGY	2 cut(s)	106, 878
BstPAI	GACNNNNGTC	2 cut(s)	23, 377
BstSCI	CCNGG	3 cut(s)	154, 593, 672
BstV1I	GCAGC	2 cut(s)	190, 610
BstX2I	RGATCY	2 cut(s)	55, 636
BstYI	RGATCY	2 cut(s)	55, 636
BsuRI	GGCC	1 cut(s)	593
BtsCI	GGATG	1 cut(s)	475
BtsIMutI	CAGTG	1 cut(s)	50
BveI	ACCTGC	2 cut(s)	341, 448
Cac8I	GCNNGC	1 cut(s)	876
CciI	TCATGA	1 cut(s)	835
Cfr13I	GGNCC	1 cut(s)	670
Csp6I	GTAC	1 cut(s)	720
CviAII	CATG	6 cut(s)	63, 103, 748, 757, 836, 875
CviQI	GTAC	1 cut(s)	720
DdeI	CTNAG	8 cut(s)	107, 386, 562, 588, 696, 814, 882, 945
DpnI	GATC	5 cut(s)	57, 312, 518, 638, 686
DpnII	GATC	5 cut(s)	55, 310, 516, 636, 684
DrdI	GACNNNNNNGTC	1 cut(s)	668
DseDI	GACNNNNNNGTC	1 cut(s)	668
Eam1104I	CTCTTC	2 cut(s)	34, 746
EarI	CTCTTC	2 cut(s)	34, 746
Ecl136II	GAGCTC	1 cut(s)	483
Eco147I	AGGCCT	1 cut(s)	593
Eco24I	GRGCYC	1 cut(s)	485
Eco47I	GGWCC	1 cut(s)	670
Eco53kI	GAGCTC	1 cut(s)	483
Eco57I	CTGAAG	1 cut(s)	769
EcoICRI	GAGCTC	1 cut(s)	483
EcoRII	CCWGG	2 cut(s)	593, 672
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	485
FaeI	CATG	6 cut(s)	66, 106, 751, 760, 839, 878
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	6 cut(s)	62, 102, 747, 756, 835, 874
FauNDI	CATATG	2 cut(s)	78, 281
FbaI	TGATCA	1 cut(s)	516
Fnu4HI	GCNGC	2 cut(s)	204, 624
FokI	GGATG	1 cut(s)	482
FriOI	GRGCYC	1 cut(s)	485
Fsp4HI	GCNGC	2 cut(s)	204, 624
FspBI	CTAG	7 cut(s)	36, 120, 339, 375, 477, 915, 921
GluI	GCNGC	2 cut(s)	204, 624
GsuI	CTGGAG	2 cut(s)	528, 668
HaeIII	GGCC	1 cut(s)	593
HapII	CCGG	1 cut(s)	155
Hin1II	CATG	6 cut(s)	66, 106, 751, 760, 839, 878
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HinfI	GANTC	3 cut(s)	401, 656, 662
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	1 cut(s)	701
Hpy166II	GTNNAC	2 cut(s)	372, 559
Hpy188I	TCNGA	3 cut(s)	18, 110, 661
Hpy188III	TCNNGA	7 cut(s)	182, 352, 388, 546, 836, 857, 915
Hpy8I	GTNNAC	2 cut(s)	372, 559
HpyAV	CCTTC	1 cut(s)	69
HpyCH4III	ACNGT	3 cut(s)	226, 805, 827
HpyCH4V	TGCA	6 cut(s)	4, 100, 252, 362, 634, 874
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
HpyF3I	CTNAG	8 cut(s)	107, 386, 562, 588, 696, 814, 882, 945
Hsp92II	CATG	6 cut(s)	66, 106, 751, 760, 839, 878
Ksp22I	TGATCA	1 cut(s)	516
Kzo9I	GATC	5 cut(s)	55, 310, 516, 636, 684
LguI	GCTCTTC	1 cut(s)	746
LmnI	GCTCC	2 cut(s)	480, 503
Lsp1109I	GCAGC	2 cut(s)	190, 610
LweI	GCATC	3 cut(s)	134, 574, 799
MaeI	CTAG	7 cut(s)	36, 120, 339, 375, 477, 915, 921
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	5 cut(s)	57, 312, 518, 638, 686
MboI	GATC	5 cut(s)	55, 310, 516, 636, 684
MboII	GAAGA	4 cut(s)	51, 480, 763, 775
MflI	RGATCY	2 cut(s)	55, 636
MhlI	GDGCHC	1 cut(s)	485
MluCI	AATT	4 cut(s)	210, 448, 527, 940
MlyI	GAGTC	2 cut(s)	656, 665
MmeI	TCCRAC	1 cut(s)	176
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	4 cut(s)	461, 615, 831, 939
MslI	CAYNNNNRTG	1 cut(s)	761
MspA1I	CMGCKG	1 cut(s)	682
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	3 cut(s)	156, 595, 674
MvaI	CCWGG	2 cut(s)	595, 674
MwoI	GCNNNNNNNGC	1 cut(s)	72
NciI	CCSGG	1 cut(s)	156
NdeI	CATATG	2 cut(s)	78, 281
NdeII	GATC	5 cut(s)	55, 310, 516, 636, 684
NlaIII	CATG	6 cut(s)	66, 106, 751, 760, 839, 878
NlaIV	GGNNCC	2 cut(s)	57, 736
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	106, 878
PaeI	GCATGC	1 cut(s)	878
PagI	TCATGA	1 cut(s)	835
PceI	AGGCCT	1 cut(s)	593
PciSI	GCTCTTC	1 cut(s)	746
PfeI	GAWTC	1 cut(s)	401
PkrI	GCNGC	2 cut(s)	205, 625
PleI	GAGTC	2 cut(s)	656, 664
PpsI	GAGTC	2 cut(s)	656, 664
PshAI	GACNNNNGTC	2 cut(s)	23, 377
PshBI	ATTAAT	1 cut(s)	831
Psp124BI	GAGCTC	1 cut(s)	485
Psp6I	CCWGG	2 cut(s)	593, 672
PspGI	CCWGG	2 cut(s)	593, 672
PspN4I	GGNNCC	2 cut(s)	57, 736
PspPI	GGNCC	1 cut(s)	670
PsuI	RGATCY	2 cut(s)	55, 636
PvuII	CAGCTG	1 cut(s)	682
RsaI	GTAC	1 cut(s)	721
RsaNI	GTAC	1 cut(s)	720
RseI	CAYNNNNRTG	1 cut(s)	761
SacI	GAGCTC	1 cut(s)	485
SapI	GCTCTTC	1 cut(s)	746
SaqAI	TTAA	4 cut(s)	461, 615, 831, 939
SatI	GCNGC	2 cut(s)	204, 624
Sau3AI	GATC	5 cut(s)	55, 310, 516, 636, 684
Sau96I	GGNCC	1 cut(s)	670
SchI	GAGTC	2 cut(s)	656, 665
ScrFI	CCNGG	3 cut(s)	156, 595, 674
SduI	GDGCHC	1 cut(s)	485
SfaNI	GCATC	3 cut(s)	134, 574, 799
SinI	GGWCC	1 cut(s)	670
SmiMI	CAYNNNNRTG	1 cut(s)	761
SpeI	ACTAGT	1 cut(s)	374
SphI	GCATGC	1 cut(s)	878
Sse9I	AATT	4 cut(s)	210, 448, 527, 940
SseBI	AGGCCT	1 cut(s)	593
SsiI	CCGC	1 cut(s)	668
SspMI	CTAG	7 cut(s)	36, 120, 339, 375, 477, 915, 921
SstI	GAGCTC	1 cut(s)	485
StuI	AGGCCT	1 cut(s)	593
StyD4I	CCNGG	3 cut(s)	154, 593, 672
TaaI	ACNGT	3 cut(s)	226, 805, 827
TasI	AATT	4 cut(s)	210, 448, 527, 940
TfiI	GAWTC	1 cut(s)	401
Tru1I	TTAA	4 cut(s)	461, 615, 831, 939
Tru9I	TTAA	4 cut(s)	461, 615, 831, 939
TscAI	CASTG	1 cut(s)	57
TseI	GCWGC	2 cut(s)	203, 623
TspDTI	ATGAA	5 cut(s)	51, 203, 256, 268, 764
TspRI	CASTG	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	670
VspI	ATTAAT	1 cut(s)	831
XapI	RAATTY	2 cut(s)	210, 527
XbaI	TCTAGA	1 cut(s)	914
XceI	RCATGY	2 cut(s)	106, 878
XspI	CTAG	7 cut(s)	36, 120, 339, 375, 477, 915, 921
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.