Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005042

Physical Location & Seq

Genomic Coordinates Forward (+)

19345203 .. 19347379

Gene Structure 2177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g17240.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCTAAATTACTCAATTGTGCTTGTGATGGCATTATGTTTGGTAATAGCTGCAGACAGGAAAATGAAAGTGGCTAAAGCTGCTTTCGATGCCAGTGTTGATGGTGGAATAACCTTCTTTGATACTGCTGAAGTGTACGGCTCCAGGGCTTCTTTTGGTGCTGTAAATTCTGAAACTCTACTAGGAAGGTACATTGTAGGAATTTTTTGTGCTGCATCATTCTTGTTTCAAGTCAACAGAGAAAGGAAACAGAAGGATCCAGGAGTAGAGGTTGTTGTCGCAACCAAATTCGCAACTTTGCCTTGGAGGCTGGGCCGTCAAAGTGTCATAGCTGCCCTCAAGGATTCCCTCAATTGCCTGGAACTTTCTTCTGTGGAACTGTATCAACTCCATTGGAAGGTTGTTCATAACTTCATATGGTATCTCGATGATCTTGGAGATGCTGTTGAGCAAGGCCTTGTGAAGGCTGTTGGTGTTTCCAACTACAGCGAAAAGCGATTGCGTGAGGCACACGCAAAACTTCAAAAGAGAGGTATCCCACTAGCATCAAATCAAGTGAATTACAGCCTCATATACAGGGCACCAAAGGAGATTGGAGTGAAGTCTACCTGTGATGAACTTGGGATCACTTTGATTGCCTATTCGCCTATTGCTCAAGGTTTGTTGATGCTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

226

Amino Acids

24.84

Weight (kDa)

8.82

Isoelectric Point (pI)

24.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06690
fragaria_vesca	FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930
malus_domestica	MD01G1007000.v1.1 MD09G1146100.v1.1 MD11G1199500.v1.1 MD17G1132700.v1.1
prunus_persica	Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1
pyrus_communis	pycom09g06640 pycom10g09970 pycom11g17240
rosa_chinensis	RchiOBHm_Chr2g0152501
rosa_laevigata	RLG00000020641
rosa_multiflora	Rmu_co8259875.1_g000001 Rmu_co8302601.1_g000001 Rmu_sc0014904.1_g000007
rosa_roxburghii	Rroxscaffold_5G00362420
rosa_rugosa	Rorug02G0433900
rosa_samantha	Rh1CG062100 Rh2AG495300 Rh2CG481400 Rh2DG518500
rosa_wichuraiana	Rw2G040750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	580
AccI	GTMKAC	1 cut(s)	605
AclWI	GGATC	3 cut(s)	251, 264, 632
AcsI	RAATTY	3 cut(s)	166, 201, 287
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	2 cut(s)	137, 191
AfiI	CCNNNNNNNGG	2 cut(s)	397, 463
AgsI	TTSAA	2 cut(s)	230, 524
AjnI	CCWGG	3 cut(s)	143, 259, 357
AluBI	AGCT	3 cut(s)	50, 80, 332
AluI	AGCT	3 cut(s)	50, 80, 332
AlwI	GGATC	3 cut(s)	251, 264, 632
AoxI	GGCC	2 cut(s)	313, 454
ApeKI	GCWGC	4 cut(s)	50, 80, 212, 332
ApoI	RAATTY	3 cut(s)	166, 201, 287
AspS9I	GGNCC	1 cut(s)	313
BaeGI	GKGCMC	1 cut(s)	583
BamHI	GGATCC	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	580
BbvI	GCAGC	4 cut(s)	37, 67, 199, 319
BccI	CCATC	2 cut(s)	22, 95
BceAI	ACGGC	2 cut(s)	154, 300
BciT130I	CCWGG	3 cut(s)	145, 261, 359
BciVI	GTATCC	1 cut(s)	545
BfaI	CTAG	2 cut(s)	182, 542
BfmI	CTRYAG	2 cut(s)	51, 484
BfuI	GTATCC	1 cut(s)	545
BglI	GCCNNNNNGGC	1 cut(s)	307
BisI	GCNGC	4 cut(s)	51, 81, 213, 333
BlsI	GCNGC	4 cut(s)	52, 82, 214, 334
Bme1390I	CCNGG	3 cut(s)	145, 261, 359
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	3 cut(s)	142, 258, 582
BmrFI	CCNGG	3 cut(s)	145, 261, 359
BmsI	GCATC	5 cut(s)	79, 224, 430, 554, 657
BpmI	CTGGAG	1 cut(s)	127
BpuEI	CTTGAG	2 cut(s)	323, 639
BsaJI	CCNNGG	2 cut(s)	144, 302
BsaXI	ACNNNNNCTCC	4 cut(s)	255, 285, 429, 459
Bsc4I	CCNNNNNNNGG	2 cut(s)	397, 463
Bse1I	ACTGG	1 cut(s)	93
BseBI	CCWGG	3 cut(s)	145, 261, 359
BseDI	CCNNGG	2 cut(s)	144, 302
BseLI	CCNNNNNNNGG	2 cut(s)	397, 463
BseNI	ACTGG	1 cut(s)	93
BseSI	GKGCMC	1 cut(s)	583
BseXI	GCAGC	4 cut(s)	37, 67, 199, 319
BseYI	CCCAGC	1 cut(s)	310
BshFI	GGCC	2 cut(s)	315, 456
BshNI	GGYRCC	1 cut(s)	580
BslI	CCNNNNNNNGG	2 cut(s)	397, 463
BsnI	GGCC	2 cut(s)	315, 456
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp143I	GATC	3 cut(s)	256, 430, 624
BspANI	GGCC	2 cut(s)	315, 456
BspLI	GGNNCC	3 cut(s)	142, 258, 582
BspMAI	CTGCAG	1 cut(s)	55
BspPI	GGATC	3 cut(s)	251, 264, 632
BspT107I	GGYRCC	1 cut(s)	580
BsrI	ACTGG	1 cut(s)	93
BssECI	CCNNGG	2 cut(s)	144, 302
BssMI	GATC	3 cut(s)	256, 430, 624
BssT1I	CCWWGG	1 cut(s)	302
Bst2UI	CCWGG	3 cut(s)	145, 261, 359
Bst4CI	ACNGT	1 cut(s)	381
BstENI	CCTNNNNNAGG	1 cut(s)	461
BstKTI	GATC	3 cut(s)	259, 433, 627
BstMBI	GATC	3 cut(s)	256, 430, 624
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 89, 307
BstNI	CCWGG	3 cut(s)	145, 261, 359
BstSCI	CCNGG	3 cut(s)	143, 259, 357
BstSFI	CTRYAG	2 cut(s)	51, 484
BstSLI	GKGCMC	1 cut(s)	583
BstV1I	GCAGC	4 cut(s)	37, 67, 199, 319
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuI	GTATCC	1 cut(s)	545
BsuRI	GGCC	2 cut(s)	315, 456
BtsIMutI	CAGTG	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	313
Csp6I	GTAC	2 cut(s)	136, 190
CviQI	GTAC	2 cut(s)	136, 190
DpnI	GATC	3 cut(s)	258, 432, 626
DpnII	GATC	3 cut(s)	256, 430, 624
Eco130I	CCWWGG	1 cut(s)	302
Eco147I	AGGCCT	1 cut(s)	456
Eco57I	CTGAAG	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	461
EcoRII	CCWGG	3 cut(s)	143, 259, 357
EcoT14I	CCWWGG	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	302
FaiI	YATR	7 cut(s)	37, 329, 408, 416, 418, 572, 574
FauNDI	CATATG	1 cut(s)	416
FblI	GTMKAC	1 cut(s)	605
Fnu4HI	GCNGC	4 cut(s)	51, 81, 213, 333
Fsp4HI	GCNGC	4 cut(s)	51, 81, 213, 333
FspBI	CTAG	2 cut(s)	182, 542
GluI	GCNGC	4 cut(s)	51, 81, 213, 333
GsaI	CCCAGC	1 cut(s)	314
GsuI	CTGGAG	1 cut(s)	127
HaeIII	GGCC	2 cut(s)	315, 456
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	1 cut(s)	344
Hpy166II	GTNNAC	3 cut(s)	136, 235, 606
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	1 cut(s)	425
Hpy8I	GTNNAC	3 cut(s)	136, 235, 606
HpyAV	CCTTC	5 cut(s)	124, 180, 247, 391, 457
HpyCH4III	ACNGT	1 cut(s)	381
HpyCH4V	TGCA	2 cut(s)	53, 215
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 89, 307
Kzo9I	GATC	3 cut(s)	256, 430, 624
LmnI	GCTCC	1 cut(s)	146
Lsp1109I	GCAGC	4 cut(s)	37, 67, 199, 319
LweI	GCATC	5 cut(s)	79, 224, 430, 554, 657
MaeI	CTAG	2 cut(s)	182, 542
MalI	GATC	3 cut(s)	258, 432, 626
MboI	GATC	3 cut(s)	256, 430, 624
MboII	GAAGA	1 cut(s)	360
MfeI	CAATTG	2 cut(s)	15, 352
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	583
MluCI	AATT	7 cut(s)	7, 15, 166, 201, 287, 352, 559
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	7 cut(s)	262, 300, 347, 359, 499, 524, 578
MseI	TTAA	1 cut(s)	676
MspR9I	CCNGG	3 cut(s)	145, 261, 359
MunI	CAATTG	2 cut(s)	15, 352
MvaI	CCWGG	3 cut(s)	145, 261, 359
MwoI	GCNNNNNNNGC	3 cut(s)	80, 89, 307
NdeI	CATATG	1 cut(s)	416
NdeII	GATC	3 cut(s)	256, 430, 624
NlaIV	GGNNCC	3 cut(s)	142, 258, 582
PceI	AGGCCT	1 cut(s)	456
PfeI	GAWTC	1 cut(s)	344
PfoI	TCCNGGA	1 cut(s)	259
PkrI	GCNGC	4 cut(s)	52, 82, 214, 334
Psp6I	CCWGG	3 cut(s)	143, 259, 357
PspFI	CCCAGC	1 cut(s)	310
PspGI	CCWGG	3 cut(s)	143, 259, 357
PspN4I	GGNNCC	3 cut(s)	142, 258, 582
PspPI	GGNCC	1 cut(s)	313
PstI	CTGCAG	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	2 cut(s)	137, 191
RsaNI	GTAC	2 cut(s)	136, 190
SaqAI	TTAA	1 cut(s)	676
SatI	GCNGC	4 cut(s)	51, 81, 213, 333
Sau3AI	GATC	3 cut(s)	256, 430, 624
Sau96I	GGNCC	1 cut(s)	313
ScrFI	CCNGG	3 cut(s)	145, 261, 359
SduI	GDGCHC	1 cut(s)	583
SfaNI	GCATC	5 cut(s)	79, 224, 430, 554, 657
SfcI	CTRYAG	2 cut(s)	51, 484
SmlI	CTYRAG	2 cut(s)	338, 654
SmoI	CTYRAG	2 cut(s)	338, 654
Sse9I	AATT	7 cut(s)	7, 15, 166, 201, 287, 352, 559
SseBI	AGGCCT	1 cut(s)	456
SspMI	CTAG	2 cut(s)	182, 542
StuI	AGGCCT	1 cut(s)	456
StyD4I	CCNGG	3 cut(s)	143, 259, 357
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	1 cut(s)	381
TaqI	TCGA	2 cut(s)	87, 426
TasI	AATT	7 cut(s)	7, 15, 166, 201, 287, 352, 559
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	1 cut(s)	676
Tru9I	TTAA	1 cut(s)	676
TscAI	CASTG	1 cut(s)	100
TseI	GCWGC	4 cut(s)	50, 80, 212, 332
TspDTI	ATGAA	4 cut(s)	80, 395, 403, 630
TspRI	CASTG	1 cut(s)	100
XagI	CCTNNNNNAGG	1 cut(s)	461
XapI	RAATTY	3 cut(s)	166, 201, 287
XmiI	GTMKAC	1 cut(s)	605
XspI	CTAG	2 cut(s)	182, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.