Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005042

Physical Location & Seq

Genomic Coordinates Forward (+)

19567734 .. 19571995

Gene Structure 4262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G179600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCTATGCATGTGAGCAGTGCATGCTTTTCTGTTTTTAGTCACAGGAGAGTTCATAAGATTAGAGCTGTTGCTTCTGAAAATGTGACCACAGAGGATGATAAGGTGAAACTGGGGGGTTCTGATTTGAAGGTGACAAGGCTTGGGATTGGAGCTTGGTCATGGGGGGACACCAGTTATTGGAACAACTTCGAATGGGATGATAGGAAGATGAAGGCTGCTAAGTCTGCTTTTGATGTCAGTGTTGATGCTGGTATAACGTTCTTTGATACTGCTGAAGTTTATGGCTCCAGGGCTTCTTTTGGTGCTATAAATTCTGAAACTCTTCTAGGAAGATTTGTCAAGGAAAGGAAAGAAAAGGATCCAGGAGTGGAGGTTGCTATTGCAACCAAATTCGCAGCTCTGCCATGGAGGCTGGGTCGTCAGAGTGTCATTACTGCCCTTAAGGATTCCCTCGGTCGCCTTGGAGTTTCTTCAGTAGAACTGTATCAACTCCATTGGCCTGGAATATGGGGAAATGAAGGGTATCTTGATGGTCTTGGAGATGCTGTTGAACAAGGCCTTGTGAAGGCTGTTGGTGTTTCAAACTATAGCGAAAGGCGATTGCGTGAGGCACACAAGAAACTTCAAAAGAGAGGTATCCCACTAGCATCAAACCAAGTGAATTACAGCCTCATATACAGGGCACCGGAGGAGAAGGGAGTAAAGTCTACCTGTGATGAACTTGGGATCACTTTGATTGCCTATTCGCCTATTGCTCAAGGTGCTCTTACAGGAAAGTATACACCTGAAAATCCTCCCACCGGCCCTCGAAGACAGATTTATACTCCTGAATTTCTTACAAGGCTCCAGCCTCTGCTGAACCGGATCAAGGAAATAGGAGAAAAGTACAGTAAAACAAACACACAGGTTGTCCTAAACTGGTTGATAGCCCAGGATAATGTTGTGCCAATCCCAGGAGCCAAAAATGCAGAACAGGCTGCAGAATTTGCCGGTGCACTTGGATGGAAGCTCGACAATGAAGAAGTCGCTGAATTGCGCTCTTTGGCTACAGAGATAAGACCCGTTACTGGTTTCCCTGTTGAAAACTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

365

Amino Acids

40.2

Weight (kDa)

8.63

Isoelectric Point (pI)

32.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06690
fragaria_vesca	FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930
malus_domestica	MD01G1007000.v1.1 MD09G1146100.v1.1 MD11G1199500.v1.1 MD17G1132700.v1.1
prunus_persica	Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1
pyrus_communis	pycom09g06640 pycom10g09970 pycom11g17240
rosa_chinensis	RchiOBHm_Chr2g0152501
rosa_laevigata	RLG00000020641
rosa_multiflora	Rmu_co8259875.1_g000001 Rmu_co8302601.1_g000001 Rmu_sc0014904.1_g000007
rosa_roxburghii	Rroxscaffold_5G00362420
rosa_rugosa	Rorug02G0433900
rosa_samantha	Rh1CG062100 Rh2AG495300 Rh2CG481400 Rh2DG518500
rosa_wichuraiana	Rw2G040750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	685
AccB7I	CCANNNNNTGG	1 cut(s)	180
AccI	GTMKAC	2 cut(s)	710, 782
AclI	AACGTT	1 cut(s)	260
AclWI	GGATC	4 cut(s)	356, 369, 737, 875
AcsI	RAATTY	4 cut(s)	313, 392, 833, 986
AcuI	CTGAAG	2 cut(s)	297, 459
AfaI	GTAC	1 cut(s)	890
AfiI	CCNNNNNNNGG	6 cut(s)	180, 568, 803, 871, 956, 1070
AflII	CTTAAG	1 cut(s)	443
AgsI	TTSAA	5 cut(s)	130, 554, 585, 629, 1085
AjnI	CCWGG	5 cut(s)	290, 364, 502, 933, 955
AluBI	AGCT	4 cut(s)	68, 155, 401, 1012
AluI	AGCT	4 cut(s)	68, 155, 401, 1012
Alw21I	GWGCWC	2 cut(s)	769, 1000
Alw44I	GTGCAC	1 cut(s)	996
AlwI	GGATC	4 cut(s)	356, 369, 737, 875
AlwNI	CAGNNNCTG	1 cut(s)	856
AoxI	GGCC	3 cut(s)	500, 559, 805
ApaLI	GTGCAC	1 cut(s)	996
ApeKI	GCWGC	3 cut(s)	218, 398, 980
ApoI	RAATTY	4 cut(s)	313, 392, 833, 986
Asp700I	GAANNNNTTC	2 cut(s)	188, 324
AspLEI	GCGC	1 cut(s)	1041
AspS9I	GGNCC	1 cut(s)	806
AsuHPI	GGTGA	2 cut(s)	118, 145
AsuII	TTCGAA	1 cut(s)	192
BaeGI	GKGCMC	2 cut(s)	688, 1000
BamHI	GGATCC	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	685
BbsI	GAAGAC	1 cut(s)	820
Bbv12I	GWGCWC	2 cut(s)	769, 1000
BbvI	GCAGC	3 cut(s)	205, 410, 967
BccI	CCATC	2 cut(s)	527, 999
BciT130I	CCWGG	5 cut(s)	292, 366, 504, 935, 957
BciVI	GTATCC	1 cut(s)	650
BfaI	CTAG	2 cut(s)	329, 647
BfmI	CTRYAG	3 cut(s)	589, 981, 1050
BfrI	CTTAAG	1 cut(s)	443
BfuI	GTATCC	1 cut(s)	650
BglI	GCCNNNNNGGC	1 cut(s)	412
BisI	GCNGC	3 cut(s)	219, 399, 981
BlsI	GCNGC	3 cut(s)	220, 400, 982
Bme1390I	CCNGG	5 cut(s)	292, 366, 504, 935, 957
BmgT120I	GGNCC	1 cut(s)	806
BmiI	GGNNCC	5 cut(s)	289, 363, 687, 848, 961
BmrFI	CCNGG	5 cut(s)	292, 366, 504, 935, 957
BmrI	ACTGGG	1 cut(s)	122
BmsI	GCATC	3 cut(s)	238, 535, 659
BmuI	ACTGGG	1 cut(s)	122
BpiI	GAAGAC	1 cut(s)	820
BpmI	CTGGAG	2 cut(s)	274, 833
Bpu14I	TTCGAA	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	744
BsaJI	CCNNGG	6 cut(s)	291, 407, 454, 463, 933, 955
BsaWI	WCCGGW	2 cut(s)	688, 864
BsaXI	ACNNNNNCTCC	6 cut(s)	360, 390, 403, 433, 534, 564
Bsc4I	CCNNNNNNNGG	6 cut(s)	180, 568, 803, 871, 956, 1070
Bse118I	RCCGGY	2 cut(s)	803, 992
Bse1I	ACTGG	4 cut(s)	117, 174, 926, 1075
BseBI	CCWGG	5 cut(s)	292, 366, 504, 935, 957
BseDI	CCNNGG	6 cut(s)	291, 407, 454, 463, 933, 955
BseGI	GGATG	3 cut(s)	103, 205, 1010
BseLI	CCNNNNNNNGG	6 cut(s)	180, 568, 803, 871, 956, 1070
BseNI	ACTGG	4 cut(s)	117, 174, 926, 1075
BseRI	GAGGAG	1 cut(s)	707
BseSI	GKGCMC	2 cut(s)	688, 1000
BseXI	GCAGC	3 cut(s)	205, 410, 967
BseYI	CCCAGC	1 cut(s)	415
Bsh1285I	CGRYCG	1 cut(s)	460
BshFI	GGCC	3 cut(s)	502, 561, 807
BshNI	GGYRCC	1 cut(s)	685
BsiEI	CGRYCG	1 cut(s)	460
BsiHKAI	GWGCWC	2 cut(s)	769, 1000
BsiSI	CCGG	4 cut(s)	689, 804, 865, 993
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	6 cut(s)	180, 568, 803, 871, 956, 1070
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	3 cut(s)	502, 561, 807
Bsp119I	TTCGAA	1 cut(s)	192
Bsp1286I	GDGCHC	3 cut(s)	688, 769, 1000
Bsp143I	GATC	3 cut(s)	361, 729, 867
Bsp19I	CCATGG	1 cut(s)	407
BspANI	GGCC	3 cut(s)	502, 561, 807
BspLI	GGNNCC	5 cut(s)	289, 363, 687, 848, 961
BspMAI	CTGCAG	1 cut(s)	985
BspPI	GGATC	4 cut(s)	356, 369, 737, 875
BspT104I	TTCGAA	1 cut(s)	192
BspT107I	GGYRCC	1 cut(s)	685
BspTI	CTTAAG	1 cut(s)	443
BsrFI	RCCGGY	2 cut(s)	803, 992
BsrI	ACTGG	4 cut(s)	117, 174, 926, 1075
BssAI	RCCGGY	2 cut(s)	803, 992
BssECI	CCNNGG	6 cut(s)	291, 407, 454, 463, 933, 955
BssMI	GATC	3 cut(s)	361, 729, 867
BssNAI	GTATAC	1 cut(s)	783
BssT1I	CCWWGG	2 cut(s)	407, 463
Bst1107I	GTATAC	1 cut(s)	783
Bst2UI	CCWGG	5 cut(s)	292, 366, 504, 935, 957
Bst4CI	ACNGT	2 cut(s)	486, 893
Bst6I	CTCTTC	1 cut(s)	330
BstAFI	CTTAAG	1 cut(s)	443
BstAPI	GCANNNNNTGC	2 cut(s)	24, 989
BstBI	TTCGAA	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	1 cut(s)	222
BstDSI	CCRYGG	1 cut(s)	407
BstENI	CCTNNNNNAGG	1 cut(s)	566
BstF5I	GGATG	3 cut(s)	103, 205, 1010
BstHHI	GCGC	1 cut(s)	1041
BstKTI	GATC	3 cut(s)	364, 732, 870
BstMBI	GATC	3 cut(s)	361, 729, 867
BstMCI	CGRYCG	1 cut(s)	460
BstMWI	GCNNNNNNNGC	7 cut(s)	24, 227, 412, 764, 968, 977, 989
BstNI	CCWGG	5 cut(s)	292, 366, 504, 935, 957
BstNSI	RCATGY	2 cut(s)	14, 27
BstSCI	CCNGG	5 cut(s)	290, 364, 502, 933, 955
BstSFI	CTRYAG	3 cut(s)	589, 981, 1050
BstSLI	GKGCMC	2 cut(s)	688, 1000
BstV1I	GCAGC	3 cut(s)	205, 410, 967
BstV2I	GAAGAC	1 cut(s)	820
BstX2I	RGATCY	1 cut(s)	361
BstXI	CCANNNNNNTGG	1 cut(s)	503
BstYI	RGATCY	1 cut(s)	361
BstZ17I	GTATAC	1 cut(s)	783
BsuI	GTATCC	1 cut(s)	650
BsuRI	GGCC	3 cut(s)	502, 561, 807
BtgI	CCRYGG	1 cut(s)	407
BtsCI	GGATG	3 cut(s)	103, 205, 1010
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	25, 247
Cac8I	GCNNGC	1 cut(s)	25
CaiI	CAGNNNCTG	1 cut(s)	856
CfoI	GCGC	1 cut(s)	1041
Cfr10I	RCCGGY	2 cut(s)	803, 992
Cfr13I	GGNCC	1 cut(s)	806
Csp6I	GTAC	1 cut(s)	889
CviAII	CATG	4 cut(s)	11, 24, 162, 408
CviQI	GTAC	1 cut(s)	889
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	3 cut(s)	363, 731, 869
DpnII	GATC	3 cut(s)	361, 729, 867
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco130I	CCWWGG	2 cut(s)	407, 463
Eco147I	AGGCCT	1 cut(s)	561
Eco57I	CTGAAG	2 cut(s)	297, 459
EcoNI	CCTNNNNNAGG	1 cut(s)	566
EcoRII	CCWGG	5 cut(s)	290, 364, 502, 933, 955
EcoT14I	CCWWGG	2 cut(s)	407, 463
EcoT22I	ATGCAT	1 cut(s)	12
ErhI	CCWWGG	2 cut(s)	407, 463
FaeI	CATG	4 cut(s)	14, 27, 165, 411
FalI	AAGNNNNNCTT	4 cut(s)	513, 545, 753, 785
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	4 cut(s)	10, 23, 161, 407
FblI	GTMKAC	2 cut(s)	710, 782
Fnu4HI	GCNGC	3 cut(s)	219, 399, 981
FokI	GGATG	3 cut(s)	110, 212, 1017
Fsp4HI	GCNGC	3 cut(s)	219, 399, 981
FspBI	CTAG	2 cut(s)	329, 647
GlaI	GCGC	1 cut(s)	1040
GluI	GCNGC	3 cut(s)	219, 399, 981
GsaI	CCCAGC	1 cut(s)	419
GsuI	CTGGAG	2 cut(s)	274, 833
HaeIII	GGCC	3 cut(s)	502, 561, 807
HapII	CCGG	4 cut(s)	689, 804, 865, 993
HhaI	GCGC	1 cut(s)	1041
Hin1II	CATG	4 cut(s)	14, 27, 165, 411
Hin6I	GCGC	1 cut(s)	1039
HinP1I	GCGC	1 cut(s)	1039
HinfI	GANTC	1 cut(s)	449
HpaII	CCGG	4 cut(s)	689, 804, 865, 993
HphI	GGTGA	2 cut(s)	118, 145
Hpy166II	GTNNAC	3 cut(s)	711, 783, 998
Hpy188I	TCNGA	4 cut(s)	79, 124, 319, 426
Hpy188III	TCNNGA	2 cut(s)	530, 830
Hpy8I	GTNNAC	3 cut(s)	711, 783, 998
HpyAV	CCTTC	5 cut(s)	124, 208, 515, 562, 691
HpyCH4III	ACNGT	2 cut(s)	486, 893
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	6 cut(s)	10, 23, 386, 971, 983, 998
HpyF10VI	GCNNNNNNNGC	7 cut(s)	24, 227, 412, 764, 968, 977, 989
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	1 cut(s)	260
Hsp92II	CATG	4 cut(s)	14, 27, 165, 411
HspAI	GCGC	1 cut(s)	1039
Kzo9I	GATC	3 cut(s)	361, 729, 867
LmnI	GCTCC	4 cut(s)	152, 293, 852, 959
Lsp1109I	GCAGC	3 cut(s)	205, 410, 967
LweI	GCATC	3 cut(s)	238, 535, 659
MaeI	CTAG	2 cut(s)	329, 647
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	4 cut(s)	41, 85, 133, 1066
MalI	GATC	3 cut(s)	363, 731, 869
MboI	GATC	3 cut(s)	361, 729, 867
MboII	GAAGA	6 cut(s)	220, 317, 345, 465, 825, 1034
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	3 cut(s)	688, 769, 1000
MluCI	AATT	6 cut(s)	313, 392, 664, 833, 986, 1034
Mph1103I	ATGCAT	1 cut(s)	12
MroXI	GAANNNNTTC	2 cut(s)	188, 324
MseI	TTAA	1 cut(s)	444
MslI	CAYNNNNRTG	1 cut(s)	1003
MspCI	CTTAAG	1 cut(s)	443
MspI	CCGG	4 cut(s)	689, 804, 865, 993
MspR9I	CCNGG	5 cut(s)	292, 366, 504, 935, 957
MvaI	CCWGG	5 cut(s)	292, 366, 504, 935, 957
MwoI	GCNNNNNNNGC	7 cut(s)	24, 227, 412, 764, 968, 977, 989
NcoI	CCATGG	1 cut(s)	407
NdeII	GATC	3 cut(s)	361, 729, 867
NlaIII	CATG	4 cut(s)	14, 27, 165, 411
NlaIV	GGNNCC	5 cut(s)	289, 363, 687, 848, 961
NmuCI	GTSAC	3 cut(s)	41, 85, 133
NsiI	ATGCAT	1 cut(s)	12
NspI	RCATGY	2 cut(s)	14, 27
NspV	TTCGAA	1 cut(s)	192
PaeI	GCATGC	1 cut(s)	27
PceI	AGGCCT	1 cut(s)	561
PdmI	GAANNNNTTC	2 cut(s)	188, 324
PfeI	GAWTC	1 cut(s)	449
PflMI	CCANNNNNTGG	1 cut(s)	180
PfoI	TCCNGGA	1 cut(s)	364
PkrI	GCNGC	3 cut(s)	220, 400, 982
Psp1406I	AACGTT	1 cut(s)	260
Psp6I	CCWGG	5 cut(s)	290, 364, 502, 933, 955
PspFI	CCCAGC	1 cut(s)	415
PspGI	CCWGG	5 cut(s)	290, 364, 502, 933, 955
PspN4I	GGNNCC	5 cut(s)	289, 363, 687, 848, 961
PspPI	GGNCC	1 cut(s)	806
PstI	CTGCAG	1 cut(s)	985
PstNI	CAGNNNCTG	1 cut(s)	856
PsuI	RGATCY	1 cut(s)	361
RsaI	GTAC	1 cut(s)	890
RsaNI	GTAC	1 cut(s)	889
RseI	CAYNNNNRTG	1 cut(s)	1003
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	3 cut(s)	219, 399, 981
Sau3AI	GATC	3 cut(s)	361, 729, 867
Sau96I	GGNCC	1 cut(s)	806
ScrFI	CCNGG	5 cut(s)	292, 366, 504, 935, 957
SduI	GDGCHC	3 cut(s)	688, 769, 1000
SfaNI	GCATC	3 cut(s)	238, 535, 659
SfcI	CTRYAG	3 cut(s)	589, 981, 1050
SfuI	TTCGAA	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	1003
SmlI	CTYRAG	2 cut(s)	443, 759
SmoI	CTYRAG	2 cut(s)	443, 759
SphI	GCATGC	1 cut(s)	27
Sse9I	AATT	6 cut(s)	313, 392, 664, 833, 986, 1034
SseBI	AGGCCT	1 cut(s)	561
SspMI	CTAG	2 cut(s)	329, 647
StuI	AGGCCT	1 cut(s)	561
StyD4I	CCNGG	5 cut(s)	290, 364, 502, 933, 955
StyI	CCWWGG	2 cut(s)	407, 463
TaaI	ACNGT	2 cut(s)	486, 893
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	3 cut(s)	192, 811, 1014
TaqII	GACCGA	1 cut(s)	446
TasI	AATT	6 cut(s)	313, 392, 664, 833, 986, 1034
TatI	WGTACW	1 cut(s)	888
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	2 cut(s)	25, 247
TseFI	GTSAC	3 cut(s)	41, 85, 133
TseI	GCWGC	3 cut(s)	218, 398, 980
Tsp45I	GTSAC	3 cut(s)	41, 85, 133
TspDTI	ATGAA	5 cut(s)	44, 227, 534, 735, 1035
TspRI	CASTG	2 cut(s)	25, 247
Van91I	CCANNNNNTGG	1 cut(s)	180
Vha464I	CTTAAG	1 cut(s)	443
VneI	GTGCAC	1 cut(s)	996
XagI	CCTNNNNNAGG	1 cut(s)	566
XapI	RAATTY	4 cut(s)	313, 392, 833, 986
XceI	RCATGY	2 cut(s)	14, 27
XmiI	GTMKAC	2 cut(s)	710, 782
XmnI	GAANNNNTTC	2 cut(s)	188, 324
XspI	CTAG	2 cut(s)	329, 647
Zsp2I	ATGCAT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.