Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014904.1

Orthogroup ID

OG0005042

Physical Location & Seq

Genomic Coordinates Reverse (-)

33892 .. 35342

Gene Structure 1451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014904.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgcatgttagcagtgtagggttttctattttcagtcacaggagagttaatagagtcagagctgttgcttctgaaaatgtgagcatagaggaacagaaggtgaagttgggggcttctgatttgaaggtgacaaagcttgggattggagcttggtcttggggtgacaccagttattggaataactttgaatgggacgataggaagatgaaggctgctaagaatgcgtttgatgccagcattgatggtggcataaccttctttgatactgctgaagtttatggctccagggcttctttcggtgctataaattctgaaactttactaggaagatttatcaaggaaaggaaagaaaaggatccagaagtggaggttgctgttgcaaccaaattcgcagctttgccttggaggctgggtcggcagagcgtcctctctgccctcaaggattccctcagtcgcctcggtctttcttcagtagaactgtatcaactccactggccaggagtatggggaaatgaaggtggttcatctgtaacaccatttttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

181

Amino Acids

20.07

Weight (kDa)

8.86

Isoelectric Point (pI)

28.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06690
fragaria_vesca	FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930
malus_domestica	MD01G1007000.v1.1 MD09G1146100.v1.1 MD11G1199500.v1.1 MD17G1132700.v1.1
prunus_persica	Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1
pyrus_communis	pycom09g06640 pycom10g09970 pycom11g17240
rosa_chinensis	RchiOBHm_Chr2g0152501
rosa_laevigata	RLG00000020641
rosa_multiflora	Rmu_co8259875.1_g000001 Rmu_co8302601.1_g000001 Rmu_sc0014904.1_g000007
rosa_roxburghii	Rroxscaffold_5G00362420
rosa_rugosa	Rorug02G0433900
rosa_samantha	Rh1CG062100 Rh2AG495300 Rh2CG481400 Rh2DG518500
rosa_wichuraiana	Rw2G040750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	174
AclWI	GGATC	2 cut(s)	350, 363
AcoI	YGGCCR	1 cut(s)	494
AcsI	RAATTY	2 cut(s)	307, 386
AcuI	CTGAAG	2 cut(s)	291, 453
AfiI	CCNNNNNNNGG	1 cut(s)	174
AgsI	TTSAA	2 cut(s)	124, 188
AjnI	CCWGG	2 cut(s)	284, 496
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AluBI	AGCT	4 cut(s)	62, 136, 149, 395
AluI	AGCT	4 cut(s)	62, 136, 149, 395
AlwI	GGATC	2 cut(s)	350, 363
AoxI	GGCC	1 cut(s)	494
ApeKI	GCWGC	2 cut(s)	212, 392
ApoI	RAATTY	2 cut(s)	307, 386
AsuHPI	GGTGA	3 cut(s)	112, 139, 173
BalI	TGGCCA	1 cut(s)	496
BamHI	GGATCC	1 cut(s)	355
BbvI	GCAGC	2 cut(s)	199, 404
BccI	CCATC	1 cut(s)	236
BciT130I	CCWGG	2 cut(s)	286, 498
BfaI	CTAG	1 cut(s)	323
BglI	GCCNNNNNGGC	1 cut(s)	406
BisI	GCNGC	2 cut(s)	213, 393
BlsI	GCNGC	2 cut(s)	214, 394
Bme1390I	CCNGG	2 cut(s)	286, 498
BmiI	GGNNCC	2 cut(s)	283, 357
BmrFI	CCNGG	2 cut(s)	286, 498
BmsI	GCATC	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	268
BpuEI	CTTGAG	1 cut(s)	422
BsaJI	CCNNGG	3 cut(s)	285, 401, 457
BsaXI	ACNNNNNCTCC	2 cut(s)	397, 427
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse1I	ACTGG	2 cut(s)	168, 497
BseBI	CCWGG	2 cut(s)	286, 498
BseDI	CCNNGG	3 cut(s)	285, 401, 457
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	463
BseNI	ACTGG	2 cut(s)	168, 497
BseXI	GCAGC	2 cut(s)	199, 404
BseYI	CCCAGC	1 cut(s)	409
BshFI	GGCC	1 cut(s)	496
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	206
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	496
Bsp143I	GATC	1 cut(s)	355
BspANI	GGCC	1 cut(s)	496
BspCNI	CTCAG	1 cut(s)	462
BspLI	GGNNCC	2 cut(s)	283, 357
BspPI	GGATC	2 cut(s)	350, 363
BsrI	ACTGG	2 cut(s)	168, 497
BssECI	CCNNGG	3 cut(s)	285, 401, 457
BssMI	GATC	1 cut(s)	355
BssT1I	CCWWGG	1 cut(s)	401
Bst2UI	CCWGG	2 cut(s)	286, 498
Bst4CI	ACNGT	1 cut(s)	480
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	2 cut(s)	216, 449
BstKTI	GATC	1 cut(s)	358
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 230, 406, 415
BstNI	CCWGG	2 cut(s)	286, 498
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	284, 496
BstV1I	GCAGC	2 cut(s)	199, 404
BstX2I	RGATCY	1 cut(s)	355
BstXI	CCANNNNNNTGG	1 cut(s)	504
BstYI	RGATCY	1 cut(s)	355
BsuRI	GGCC	1 cut(s)	496
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	2 cut(s)	19, 490
Cac8I	GCNNGC	1 cut(s)	235
CseI	GACGC	1 cut(s)	412
CviAII	CATG	1 cut(s)	5
DdeI	CTNAG	2 cut(s)	216, 449
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
EaeI	YGGCCR	1 cut(s)	494
Eco130I	CCWWGG	1 cut(s)	401
Eco57I	CTGAAG	2 cut(s)	291, 453
EcoRII	CCWGG	2 cut(s)	284, 496
EcoT14I	CCWWGG	1 cut(s)	401
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	401
FaeI	CATG	1 cut(s)	8
FaiI	YATR	6 cut(s)	6, 86, 251, 279, 305, 505
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	1 cut(s)	4
Fnu4HI	GCNGC	2 cut(s)	213, 393
Fsp4HI	GCNGC	2 cut(s)	213, 393
FspBI	CTAG	1 cut(s)	323
GluI	GCNGC	2 cut(s)	213, 393
GsaI	CCCAGC	1 cut(s)	413
GsuI	CTGGAG	1 cut(s)	268
HaeIII	GGCC	1 cut(s)	496
HgaI	GACGC	1 cut(s)	412
Hin1II	CATG	1 cut(s)	8
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	2 cut(s)	54, 443
HphI	GGTGA	3 cut(s)	112, 139, 173
Hpy188I	TCNGA	4 cut(s)	59, 73, 118, 313
Hpy188III	TCNNGA	1 cut(s)	359
HpyAV	CCTTC	5 cut(s)	91, 118, 202, 265, 509
HpyCH4III	ACNGT	1 cut(s)	480
HpyCH4V	TGCA	2 cut(s)	4, 380
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 230, 406, 415
HpyF3I	CTNAG	2 cut(s)	216, 449
Hsp92II	CATG	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	355
LmnI	GCTCC	2 cut(s)	146, 287
Lsp1109I	GCAGC	2 cut(s)	199, 404
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	323
MaeIII	GTNAC	4 cut(s)	35, 127, 161, 529
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	3 cut(s)	214, 339, 459
MflI	RGATCY	1 cut(s)	355
MlsI	TGGCCA	1 cut(s)	496
MluCI	AATT	2 cut(s)	307, 386
MluNI	TGGCCA	1 cut(s)	496
MlyI	GAGTC	1 cut(s)	63
MnlI	CCTC	7 cut(s)	82, 361, 399, 437, 446, 458, 467
Mox20I	TGGCCA	1 cut(s)	496
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	496
MseI	TTAA	2 cut(s)	48, 544
Msp20I	TGGCCA	1 cut(s)	496
MspR9I	CCNGG	2 cut(s)	286, 498
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	2 cut(s)	286, 498
MwoI	GCNNNNNNNGC	4 cut(s)	221, 230, 406, 415
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	1 cut(s)	8
NlaIV	GGNNCC	2 cut(s)	283, 357
NmuCI	GTSAC	3 cut(s)	35, 127, 161
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PctI	GAATGC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	443
PflMI	CCANNNNNTGG	1 cut(s)	174
PkrI	GCNGC	2 cut(s)	214, 394
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp6I	CCWGG	2 cut(s)	284, 496
PspFI	CCCAGC	1 cut(s)	409
PspGI	CCWGG	2 cut(s)	284, 496
PspN4I	GGNNCC	2 cut(s)	283, 357
PsuI	RGATCY	1 cut(s)	355
SaqAI	TTAA	2 cut(s)	48, 544
SatI	GCNGC	2 cut(s)	213, 393
Sau3AI	GATC	1 cut(s)	355
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	2 cut(s)	286, 498
SetI	ASST	9 cut(s)	64, 102, 129, 138, 151, 257, 372, 397, 520
SfaNI	GCATC	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	2 cut(s)	307, 386
SspMI	CTAG	1 cut(s)	323
StyD4I	CCNGG	2 cut(s)	284, 496
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	1 cut(s)	480
TaqII	GACCGA	1 cut(s)	449
TasI	AATT	2 cut(s)	307, 386
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	2 cut(s)	48, 544
Tru9I	TTAA	2 cut(s)	48, 544
TscAI	CASTG	2 cut(s)	19, 497
TseFI	GTSAC	3 cut(s)	35, 127, 161
TseI	GCWGC	2 cut(s)	212, 392
Tsp45I	GTSAC	3 cut(s)	35, 127, 161
TspDTI	ATGAA	3 cut(s)	221, 513, 528
TspRI	CASTG	2 cut(s)	19, 497
Van91I	CCANNNNNTGG	1 cut(s)	174
XapI	RAATTY	2 cut(s)	307, 386
XceI	RCATGY	1 cut(s)	8
XspI	CTAG	1 cut(s)	323
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.