Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0005042

Physical Location & Seq

Genomic Coordinates Reverse (-)

4876506 .. 4880086

Gene Structure 3581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g06640.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCTATGCATGTTAGCAGTGCATGTTTTTCTGCTTTGAGTGAGAGGAGAGTTCCTAGGGTTAGAGCTGTTGCTTCTGAGAATGTGACCACAGAGGATGATAAGGTGCAATTGGGTGGCTCTGATTTGAAGGTGACAAGGCTTGGGATTGGAGCTTGGTCATGGGGTGACACCAGTTATTGGAATAACTTCCAATGGGATGACAGGAAAATGAAAGCGGCTAAAGCGGCTTTCGATGTCAGTGTTGATGGCGGAATAACCTTCTTTGATACTGCCGAAGTGTACGGCTCCAGGGCTTCTTTTGGTGCTGTAAATTCTGAAACTCTACTAGGAAGATTTATCAAGGAAAGGAAACAAAAGGATCCAGGAGTAGAAGTTGTTGTTGCGACCAAATTTGCAGCTTTGCCGTGGAGGCTGGGCCGTCAAAGTGTCCTGGCCGCCCTTAAGGATTCCCTCAATCGCCTTGAACTTTCTTCGGTAGAACTGTATCAACTCCATTGGCCTGGAATATGGGGAAATAAAGGGTATCTCGATGGTCTTGGAGATGCTGTTGAGCAGGGCCTTGTGAAGGCCGTTGGTGTTTCCAACTACAGCGAAAAGCGATTGCGTGAGGCACACACGAAACTTCAAAAGAGAGGTATCCCACTAGCATCAAATCAAGTGAATTACAGCCTCATATACAGGGCACCAGAGGAGAACGGAGTTAAGTCTACCTGTGATGAACTATCGATCACTTTGATTGCCTATTCGCCTATTGCTCAAGGTGCTCTTACAGGAAAGTATACACCTGAAAATCCCCCAAGTGGCCCCCGAGGACAGATTTATACTCCTGAATTTCTTACAAAGCTCCAACCTCTGCTGAACCGGATCAAGGAAATAGGAGAAAAGTACAGTAAAACAAACACACAGGTAGTCCTAAACTGGCTGATAGCCCAGGACAACGTTGTGCCAATCCCGGGAGCCAAAAACGGAGAACAGGCTGCAGAATTTGCAGGTGCCCTTGGATGGAGGCTCAACAGTGAAGAAGTAACCGAATTGCGCGCTTTGGCTACAGAGATAAAACCTGTTACTGGTTTCCCTGTTGAAAAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

365

Amino Acids

40.0

Weight (kDa)

8.63

Isoelectric Point (pI)

29.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06690
fragaria_vesca	FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930
malus_domestica	MD01G1007000.v1.1 MD09G1146100.v1.1 MD11G1199500.v1.1 MD17G1132700.v1.1
prunus_persica	Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1
pyrus_communis	pycom09g06640 pycom10g09970 pycom11g17240
rosa_chinensis	RchiOBHm_Chr2g0152501
rosa_laevigata	RLG00000020641
rosa_multiflora	Rmu_co8259875.1_g000001 Rmu_co8302601.1_g000001 Rmu_sc0014904.1_g000007
rosa_roxburghii	Rroxscaffold_5G00362420
rosa_rugosa	Rorug02G0433900
rosa_samantha	Rh1CG062100 Rh2AG495300 Rh2CG481400 Rh2DG518500
rosa_wichuraiana	Rw2G040750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1093
AarI	CACCTGC	1 cut(s)	983
Acc36I	ACCTGC	1 cut(s)	983
AccB1I	GGYRCC	2 cut(s)	685, 995
AccB7I	CCANNNNNTGG	1 cut(s)	180
AccI	GTMKAC	2 cut(s)	710, 782
AccII	CGCG	1 cut(s)	1041
AciI	CCGC	4 cut(s)	218, 227, 252, 438
AclI	AACGTT	1 cut(s)	942
AclWI	GGATC	3 cut(s)	356, 369, 875
AcoI	YGGCCR	1 cut(s)	435
AcsI	RAATTY	4 cut(s)	313, 392, 833, 986
AfaI	GTAC	2 cut(s)	284, 890
AfiI	CCNNNNNNNGG	7 cut(s)	180, 568, 803, 871, 956, 1005, 1070
AflII	CTTAAG	1 cut(s)	443
AgsI	TTSAA	4 cut(s)	130, 467, 629, 1085
AjnI	CCWGG	5 cut(s)	290, 364, 432, 502, 933
AluBI	AGCT	4 cut(s)	68, 155, 401, 847
AluI	AGCT	4 cut(s)	68, 155, 401, 847
Alw21I	GWGCWC	1 cut(s)	769
AlwI	GGATC	3 cut(s)	356, 369, 875
Ama87I	CYCGRG	2 cut(s)	810, 955
AoxI	GGCC	6 cut(s)	418, 435, 500, 559, 570, 805
ApeKI	GCWGC	2 cut(s)	398, 980
ApoI	RAATTY	4 cut(s)	313, 392, 833, 986
Asp700I	GAANNNNTTC	1 cut(s)	188
AspA2I	CCTAGG	1 cut(s)	56
AspLEI	GCGC	2 cut(s)	1041, 1043
AspS9I	GGNCC	3 cut(s)	418, 559, 806
AsuC2I	CCSGG	2 cut(s)	956, 957
AsuHPI	GGTGA	2 cut(s)	145, 179
AvaI	CYCGRG	2 cut(s)	810, 955
AvrII	CCTAGG	1 cut(s)	56
BaeGI	GKGCMC	2 cut(s)	688, 1000
BamHI	GGATCC	1 cut(s)	361
BanI	GGYRCC	2 cut(s)	685, 995
Bbv12I	GWGCWC	1 cut(s)	769
BbvI	GCAGC	2 cut(s)	410, 967
BccI	CCATC	3 cut(s)	242, 527, 999
BceAI	ACGGC	4 cut(s)	301, 391, 405, 557
BciT130I	CCWGG	5 cut(s)	292, 366, 434, 504, 935
BciVI	GTATCC	1 cut(s)	650
BcnI	CCSGG	2 cut(s)	956, 957
BfaI	CTAG	3 cut(s)	57, 329, 647
BfmI	CTRYAG	3 cut(s)	589, 981, 1050
BfrI	CTTAAG	1 cut(s)	443
BfuAI	ACCTGC	1 cut(s)	983
BfuI	GTATCC	1 cut(s)	650
BglI	GCCNNNNNGGC	1 cut(s)	412
BisI	GCNGC	5 cut(s)	219, 228, 399, 438, 981
BlnI	CCTAGG	1 cut(s)	56
BlsI	GCNGC	5 cut(s)	220, 229, 400, 439, 982
Bme1390I	CCNGG	7 cut(s)	292, 366, 434, 504, 935, 956, 957
BmeT110I	CYCGRG	2 cut(s)	810, 955
BmgT120I	GGNCC	3 cut(s)	418, 559, 806
BmiI	GGNNCC	6 cut(s)	289, 363, 687, 808, 961, 997
BmrFI	CCNGG	7 cut(s)	292, 366, 434, 504, 935, 956, 957
BmsI	GCATC	2 cut(s)	535, 659
BpmI	CTGGAG	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	744
BpuMI	CCSGG	2 cut(s)	956, 957
Bsa29I	ATCGAT	1 cut(s)	728
BsaJI	CCNNGG	7 cut(s)	56, 291, 407, 811, 933, 955, 1000
BsaWI	WCCGGW	1 cut(s)	864
BsaXI	ACNNNNNCTCC	4 cut(s)	360, 390, 534, 564
Bsc4I	CCNNNNNNNGG	7 cut(s)	180, 568, 803, 871, 956, 1005, 1070
Bse1I	ACTGG	3 cut(s)	174, 926, 1075
BseBI	CCWGG	5 cut(s)	292, 366, 434, 504, 935
BseCI	ATCGAT	1 cut(s)	728
BseDI	CCNNGG	7 cut(s)	56, 291, 407, 811, 933, 955, 1000
BseGI	GGATG	3 cut(s)	103, 205, 1010
BseLI	CCNNNNNNNGG	7 cut(s)	180, 568, 803, 871, 956, 1005, 1070
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	3 cut(s)	174, 926, 1075
BsePI	GCGCGC	1 cut(s)	1039
BseRI	GAGGAG	2 cut(s)	61, 707
BseSI	GKGCMC	2 cut(s)	688, 1000
BseXI	GCAGC	2 cut(s)	410, 967
BseYI	CCCAGC	1 cut(s)	415
Bsh1236I	CGCG	1 cut(s)	1041
BshFI	GGCC	6 cut(s)	420, 437, 502, 561, 572, 807
BshNI	GGYRCC	2 cut(s)	685, 995
BshVI	ATCGAT	1 cut(s)	728
BsiHKAI	GWGCWC	1 cut(s)	769
BsiHKCI	CYCGRG	2 cut(s)	810, 955
BsiSI	CCGG	2 cut(s)	865, 956
BslI	CCNNNNNNNGG	7 cut(s)	180, 568, 803, 871, 956, 1005, 1070
BsnI	GGCC	6 cut(s)	420, 437, 502, 561, 572, 807
BsoBI	CYCGRG	2 cut(s)	810, 955
Bsp1286I	GDGCHC	3 cut(s)	688, 769, 1000
Bsp143I	GATC	3 cut(s)	361, 729, 867
BspACI	CCGC	4 cut(s)	218, 227, 252, 438
BspANI	GGCC	6 cut(s)	420, 437, 502, 561, 572, 807
BspCNI	CTCAG	1 cut(s)	70
BspDI	ATCGAT	1 cut(s)	728
BspFNI	CGCG	1 cut(s)	1041
BspLI	GGNNCC	6 cut(s)	289, 363, 687, 808, 961, 997
BspMAI	CTGCAG	1 cut(s)	985
BspMI	ACCTGC	1 cut(s)	983
BspPI	GGATC	3 cut(s)	356, 369, 875
BspT107I	GGYRCC	2 cut(s)	685, 995
BspTI	CTTAAG	1 cut(s)	443
BsrI	ACTGG	3 cut(s)	174, 926, 1075
BssECI	CCNNGG	7 cut(s)	56, 291, 407, 811, 933, 955, 1000
BssHII	GCGCGC	1 cut(s)	1039
BssMI	GATC	3 cut(s)	361, 729, 867
BssNAI	GTATAC	1 cut(s)	783
BssT1I	CCWWGG	2 cut(s)	56, 1000
Bst1107I	GTATAC	1 cut(s)	783
Bst2UI	CCWGG	5 cut(s)	292, 366, 434, 504, 935
Bst4CI	ACNGT	3 cut(s)	486, 893, 1019
BstAFI	CTTAAG	1 cut(s)	443
BstAPI	GCANNNNNTGC	1 cut(s)	989
BstC8I	GCNNGC	1 cut(s)	1041
BstDEI	CTNAG	1 cut(s)	78
BstDSI	CCRYGG	1 cut(s)	407
BstENI	CCTNNNNNAGG	1 cut(s)	566
BstF5I	GGATG	3 cut(s)	103, 205, 1010
BstFNI	CGCG	1 cut(s)	1041
BstHHI	GCGC	2 cut(s)	1041, 1043
BstKTI	GATC	3 cut(s)	364, 732, 870
BstMBI	GATC	3 cut(s)	361, 729, 867
BstMWI	GCNNNNNNNGC	5 cut(s)	224, 227, 412, 764, 989
BstNI	CCWGG	5 cut(s)	292, 366, 434, 504, 935
BstNSI	RCATGY	2 cut(s)	14, 27
BstSCI	CCNGG	7 cut(s)	290, 364, 432, 502, 933, 954, 955
BstSFI	CTRYAG	3 cut(s)	589, 981, 1050
BstSLI	GKGCMC	2 cut(s)	688, 1000
BstUI	CGCG	1 cut(s)	1041
BstV1I	GCAGC	2 cut(s)	410, 967
BstX2I	RGATCY	1 cut(s)	361
BstXI	CCANNNNNNTGG	1 cut(s)	503
BstYI	RGATCY	1 cut(s)	361
BstZ17I	GTATAC	1 cut(s)	783
Bsu15I	ATCGAT	1 cut(s)	728
BsuI	GTATCC	1 cut(s)	650
BsuRI	GGCC	6 cut(s)	420, 437, 502, 561, 572, 807
BsuTUI	ATCGAT	1 cut(s)	728
BtgI	CCRYGG	1 cut(s)	407
BtsCI	GGATG	3 cut(s)	103, 205, 1010
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	3 cut(s)	25, 247, 1024
BveI	ACCTGC	1 cut(s)	983
Cac8I	GCNNGC	1 cut(s)	1041
CfoI	GCGC	2 cut(s)	1041, 1043
Cfr13I	GGNCC	3 cut(s)	418, 559, 806
Cfr9I	CCCGGG	1 cut(s)	955
ClaI	ATCGAT	1 cut(s)	728
Csp6I	GTAC	2 cut(s)	283, 889
CviAII	CATG	3 cut(s)	11, 24, 162
CviQI	GTAC	2 cut(s)	283, 889
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	3 cut(s)	363, 731, 869
DpnII	GATC	3 cut(s)	361, 729, 867
EaeI	YGGCCR	1 cut(s)	435
EciI	GGCGGA	1 cut(s)	267
Eco130I	CCWWGG	2 cut(s)	56, 1000
Eco88I	CYCGRG	2 cut(s)	810, 955
EcoNI	CCTNNNNNAGG	1 cut(s)	566
EcoO109I	RGGNCCY	1 cut(s)	559
EcoRII	CCWGG	5 cut(s)	290, 364, 432, 502, 933
EcoT14I	CCWWGG	2 cut(s)	56, 1000
EcoT22I	ATGCAT	1 cut(s)	12
ErhI	CCWWGG	2 cut(s)	56, 1000
FaeI	CATG	3 cut(s)	14, 27, 165
FalI	AAGNNNNNCTT	2 cut(s)	753, 785
FatI	CATG	3 cut(s)	10, 23, 161
FblI	GTMKAC	2 cut(s)	710, 782
Fnu4HI	GCNGC	5 cut(s)	219, 228, 399, 438, 981
FokI	GGATG	3 cut(s)	110, 212, 1017
Fsp4HI	GCNGC	5 cut(s)	219, 228, 399, 438, 981
FspBI	CTAG	3 cut(s)	57, 329, 647
GlaI	GCGC	2 cut(s)	1040, 1042
GluI	GCNGC	5 cut(s)	219, 228, 399, 438, 981
GsaI	CCCAGC	1 cut(s)	419
GsuI	CTGGAG	1 cut(s)	274
HaeIII	GGCC	6 cut(s)	420, 437, 502, 561, 572, 807
HapII	CCGG	2 cut(s)	865, 956
HhaI	GCGC	2 cut(s)	1041, 1043
Hin1II	CATG	3 cut(s)	14, 27, 165
Hin6I	GCGC	2 cut(s)	1039, 1041
HinP1I	GCGC	2 cut(s)	1039, 1041
HinfI	GANTC	1 cut(s)	449
HpaII	CCGG	2 cut(s)	865, 956
HphI	GGTGA	2 cut(s)	145, 179
Hpy166II	GTNNAC	3 cut(s)	283, 711, 783
Hpy188I	TCNGA	3 cut(s)	79, 124, 319
Hpy188III	TCNNGA	2 cut(s)	530, 830
Hpy8I	GTNNAC	3 cut(s)	283, 711, 783
HpyAV	CCTTC	3 cut(s)	124, 271, 562
HpyCH4III	ACNGT	3 cut(s)	486, 893, 1019
HpyCH4IV	ACGT	1 cut(s)	942
HpyCH4V	TGCA	6 cut(s)	10, 23, 109, 398, 983, 992
HpyF10VI	GCNNNNNNNGC	5 cut(s)	224, 227, 412, 764, 989
HpyF3I	CTNAG	1 cut(s)	78
HpySE526I	ACGT	1 cut(s)	942
Hsp92II	CATG	3 cut(s)	14, 27, 165
HspAI	GCGC	2 cut(s)	1039, 1041
Kzo9I	GATC	3 cut(s)	361, 729, 867
LmnI	GCTCC	4 cut(s)	152, 293, 852, 959
Lsp1109I	GCAGC	2 cut(s)	410, 967
LweI	GCATC	2 cut(s)	535, 659
MaeI	CTAG	3 cut(s)	57, 329, 647
MaeII	ACGT	1 cut(s)	942
MaeIII	GTNAC	5 cut(s)	85, 133, 167, 1027, 1066
MalI	GATC	3 cut(s)	363, 731, 869
MboI	GATC	3 cut(s)	361, 729, 867
MboII	GAAGA	3 cut(s)	345, 465, 1034
MfeI	CAATTG	1 cut(s)	110
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	3 cut(s)	688, 769, 1000
MluCI	AATT	8 cut(s)	110, 313, 392, 664, 833, 986, 1034, 1088
MmeI	TCCRAC	2 cut(s)	609, 874
Mph1103I	ATGCAT	1 cut(s)	12
MroXI	GAANNNNTTC	1 cut(s)	188
MseI	TTAA	2 cut(s)	444, 705
MspCI	CTTAAG	1 cut(s)	443
MspI	CCGG	2 cut(s)	865, 956
MspR9I	CCNGG	7 cut(s)	292, 366, 434, 504, 935, 956, 957
MunI	CAATTG	1 cut(s)	110
MvaI	CCWGG	5 cut(s)	292, 366, 434, 504, 935
MvnI	CGCG	1 cut(s)	1041
MwoI	GCNNNNNNNGC	5 cut(s)	224, 227, 412, 764, 989
NciI	CCSGG	2 cut(s)	956, 957
NdeII	GATC	3 cut(s)	361, 729, 867
NlaIII	CATG	3 cut(s)	14, 27, 165
NlaIV	GGNNCC	6 cut(s)	289, 363, 687, 808, 961, 997
NmuCI	GTSAC	3 cut(s)	85, 133, 167
NsiI	ATGCAT	1 cut(s)	12
NspI	RCATGY	2 cut(s)	14, 27
PaqCI	CACCTGC	1 cut(s)	983
PauI	GCGCGC	1 cut(s)	1039
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	449
PflMI	CCANNNNNTGG	1 cut(s)	180
PfoI	TCCNGGA	1 cut(s)	364
PkrI	GCNGC	5 cut(s)	220, 229, 400, 439, 982
PsiI	TTATAA	1 cut(s)	1093
Psp1406I	AACGTT	1 cut(s)	942
Psp6I	CCWGG	5 cut(s)	290, 364, 432, 502, 933
PspFI	CCCAGC	1 cut(s)	415
PspGI	CCWGG	5 cut(s)	290, 364, 432, 502, 933
PspN4I	GGNNCC	6 cut(s)	289, 363, 687, 808, 961, 997
PspPI	GGNCC	3 cut(s)	418, 559, 806
PstI	CTGCAG	1 cut(s)	985
PsuI	RGATCY	1 cut(s)	361
PteI	GCGCGC	1 cut(s)	1039
RsaI	GTAC	2 cut(s)	284, 890
RsaNI	GTAC	2 cut(s)	283, 889
SaqAI	TTAA	2 cut(s)	444, 705
SatI	GCNGC	5 cut(s)	219, 228, 399, 438, 981
Sau3AI	GATC	3 cut(s)	361, 729, 867
Sau96I	GGNCC	3 cut(s)	418, 559, 806
ScrFI	CCNGG	7 cut(s)	292, 366, 434, 504, 935, 956, 957
SduI	GDGCHC	3 cut(s)	688, 769, 1000
SfaNI	GCATC	2 cut(s)	535, 659
SfcI	CTRYAG	3 cut(s)	589, 981, 1050
SmaI	CCCGGG	1 cut(s)	957
SmlI	CTYRAG	2 cut(s)	443, 759
SmoI	CTYRAG	2 cut(s)	443, 759
Sse9I	AATT	8 cut(s)	110, 313, 392, 664, 833, 986, 1034, 1088
SsiI	CCGC	4 cut(s)	218, 227, 252, 438
SspMI	CTAG	3 cut(s)	57, 329, 647
StyD4I	CCNGG	7 cut(s)	290, 364, 432, 502, 933, 954, 955
StyI	CCWWGG	2 cut(s)	56, 1000
TaaI	ACNGT	3 cut(s)	486, 893, 1019
TaiI	ACGT	1 cut(s)	945
TaqI	TCGA	3 cut(s)	234, 531, 728
TasI	AATT	8 cut(s)	110, 313, 392, 664, 833, 986, 1034, 1088
TatI	WGTACW	1 cut(s)	888
TauI	GCSGC	3 cut(s)	221, 230, 440
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	2 cut(s)	444, 705
Tru9I	TTAA	2 cut(s)	444, 705
TscAI	CASTG	3 cut(s)	25, 247, 1024
TseFI	GTSAC	3 cut(s)	85, 133, 167
TseI	GCWGC	2 cut(s)	398, 980
Tsp45I	GTSAC	3 cut(s)	85, 133, 167
TspDTI	ATGAA	2 cut(s)	227, 735
TspGWI	ACGGA	2 cut(s)	714, 984
TspMI	CCCGGG	1 cut(s)	955
TspRI	CASTG	3 cut(s)	25, 247, 1024
Van91I	CCANNNNNTGG	1 cut(s)	180
Vha464I	CTTAAG	1 cut(s)	443
XagI	CCTNNNNNAGG	1 cut(s)	566
XapI	RAATTY	4 cut(s)	313, 392, 833, 986
XceI	RCATGY	2 cut(s)	14, 27
XmaI	CCCGGG	1 cut(s)	955
XmaJI	CCTAGG	1 cut(s)	56
XmiI	GTMKAC	2 cut(s)	710, 782
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	3 cut(s)	57, 329, 647
Zsp2I	ATGCAT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.