Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005042

Physical Location & Seq

Genomic Coordinates Forward (+)

43432379 .. 43433395

Gene Structure 1017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00362420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGACAAGGACAAGAGCTGTACCGATCTGCTCGCCGCTGGCCGTAAAAAGAGATTGCATGATGCATACGAGAAACTCAAAAAGAGAGGTATCCCACTAGCATCAAAGCAAGTGAATTACAGTCTCATATACAAGGCACCAGAGGAGAATGGAGGTAAGGCTACCCGTGACGAACTTGGGATCACTTTGATTGCCTATTCACCTATTGCTCAAGGTACGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

74

Amino Acids

8.15

Weight (kDa)

9.48

Isoelectric Point (pI)

32.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	21 - 73	8e-06	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06690
fragaria_vesca	FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930
malus_domestica	MD01G1007000.v1.1 MD09G1146100.v1.1 MD11G1199500.v1.1 MD17G1132700.v1.1
prunus_persica	Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1
pyrus_communis	pycom09g06640 pycom10g09970 pycom11g17240
rosa_chinensis	RchiOBHm_Chr2g0152501
rosa_laevigata	RLG00000020641
rosa_multiflora	Rmu_co8259875.1_g000001 Rmu_co8302601.1_g000001 Rmu_sc0014904.1_g000007
rosa_roxburghii	Rroxscaffold_5G00362420
rosa_rugosa	Rorug02G0433900
rosa_samantha	Rh1CG062100 Rh2AG495300 Rh2CG481400 Rh2DG518500
rosa_wichuraiana	Rw2G040750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	136
AciI	CCGC	1 cut(s)	36
AclWI	GGATC	1 cut(s)	188
AcoI	YGGCCR	1 cut(s)	40
AfaI	GTAC	2 cut(s)	22, 217
AluBI	AGCT	1 cut(s)	18
AluI	AGCT	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	188
AoxI	GGCC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	136
BceAI	ACGGC	1 cut(s)	27
BciVI	GTATCC	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	101
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	138
BmsI	GCATC	2 cut(s)	52, 110
BpuEI	CTTGAG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	42
BshNI	GGYRCC	1 cut(s)	136
BsmAI	GTCTC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	25, 180
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	1 cut(s)	188
BspT107I	GGYRCC	1 cut(s)	136
BssMI	GATC	2 cut(s)	25, 180
Bst4CI	ACNGT	2 cut(s)	122, 220
BstC8I	GCNNGC	2 cut(s)	33, 40
BstKTI	GATC	2 cut(s)	28, 183
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	2 cut(s)	25, 180
BsuI	GTATCC	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	42
Cac8I	GCNNGC	2 cut(s)	33, 40
Csp6I	GTAC	2 cut(s)	21, 216
CviAII	CATG	1 cut(s)	59
CviJI	RGCY	3 cut(s)	18, 42, 161
CviKI_1	RGCY	3 cut(s)	18, 42, 161
CviQI	GTAC	2 cut(s)	21, 216
DpnI	GATC	2 cut(s)	27, 182
DpnII	GATC	2 cut(s)	25, 180
EaeI	YGGCCR	1 cut(s)	40
EcoT22I	ATGCAT	1 cut(s)	67
FaeI	CATG	1 cut(s)	62
FaiI	YATR	4 cut(s)	60, 67, 128, 130
FatI	CATG	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	42
Hin1II	CATG	1 cut(s)	62
HphI	GGTGA	1 cut(s)	192
HpyCH4III	ACNGT	2 cut(s)	122, 220
HpyCH4V	TGCA	2 cut(s)	58, 65
Hsp92II	CATG	1 cut(s)	62
Kzo9I	GATC	2 cut(s)	25, 180
LpnPI	CCDG	2 cut(s)	24, 153
LweI	GCATC	2 cut(s)	52, 110
MaeI	CTAG	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	2 cut(s)	27, 182
MboI	GATC	2 cut(s)	25, 180
MluCI	AATT	1 cut(s)	115
MnlI	CCTC	3 cut(s)	80, 136, 146
Mph1103I	ATGCAT	1 cut(s)	67
MspA1I	CMGCKG	1 cut(s)	38
NdeII	GATC	2 cut(s)	25, 180
NlaIII	CATG	1 cut(s)	62
NlaIV	GGNNCC	1 cut(s)	138
NmuCI	GTSAC	1 cut(s)	167
NsiI	ATGCAT	1 cut(s)	67
PkrI	GCNGC	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	138
RsaI	GTAC	2 cut(s)	22, 217
RsaNI	GTAC	2 cut(s)	21, 216
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	2 cut(s)	25, 180
SetI	ASST	5 cut(s)	20, 91, 157, 205, 217
SfaNI	GCATC	2 cut(s)	52, 110
SmlI	CTYRAG	1 cut(s)	210
SmoI	CTYRAG	1 cut(s)	210
Sse9I	AATT	1 cut(s)	115
SsiI	CCGC	1 cut(s)	36
SspMI	CTAG	1 cut(s)	98
TaaI	ACNGT	2 cut(s)	122, 220
TasI	AATT	1 cut(s)	115
TauI	GCSGC	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	167
XspI	CTAG	1 cut(s)	98
Zsp2I	ATGCAT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.