Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005042

Physical Location & Seq

Genomic Coordinates Forward (+)

2996358 .. 2998819

Gene Structure 2462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1007000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCTCCTCTTGTCTGGGTATCTCAATGGTCTTGGAGAAGCTGTTGAGCAGGGCCTTGTAAAGGTTGTTGGTGTTTCCAACTACAACGGTGCTCTTACAGGAAAGTATACACCTAAAAATCCCCCAACTGGCCCTCGAAGACAAATTTATACTCCTGAATTTCTTTCAAAGCTCCAATCTCTGCTGAACCGGATCAAGGAAAAAGGAGAAAAGTACAATAAAACAAACACACAGGTAGTCCTAAACTGGTTGATAGCCCAGGACAACGTTATGCAAATTCTGGGAGCCAAAAACGCAGAACAGGCTGCAGAATTTGCAGGTGCACTTGGATGGCAGCTCAACAGTGAAGAAGTAGGCGAATTGCGTGCTTTGGCTACAGAGATAAAACCTGTTACTGGTTTCCCTGTTGAAAAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

140

Amino Acids

15.2

Weight (kDa)

8.83

Isoelectric Point (pI)

23.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	29 - 124	6.3e-09	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06690
fragaria_vesca	FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930 FvH4_6g38930
malus_domestica	MD01G1007000.v1.1 MD09G1146100.v1.1 MD11G1199500.v1.1 MD17G1132700.v1.1
prunus_persica	Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1 Prupe.3G179600_v2.0.a1
pyrus_communis	pycom09g06640 pycom10g09970 pycom11g17240
rosa_chinensis	RchiOBHm_Chr2g0152501
rosa_laevigata	RLG00000020641
rosa_multiflora	Rmu_co8259875.1_g000001 Rmu_co8302601.1_g000001 Rmu_sc0014904.1_g000007
rosa_roxburghii	Rroxscaffold_5G00362420
rosa_rugosa	Rorug02G0433900
rosa_samantha	Rh1CG062100 Rh2AG495300 Rh2CG481400 Rh2DG518500
rosa_wichuraiana	Rw2G040750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	418
AarI	CACCTGC	1 cut(s)	308
Acc36I	ACCTGC	1 cut(s)	308
AccI	GTMKAC	1 cut(s)	107
AclI	AACGTT	1 cut(s)	267
AclWI	GGATC	1 cut(s)	200
AcsI	RAATTY	4 cut(s)	144, 158, 276, 311
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	4 cut(s)	61, 128, 196, 395
AgsI	TTSAA	2 cut(s)	168, 410
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	3 cut(s)	41, 172, 337
AluI	AGCT	3 cut(s)	41, 172, 337
Alw21I	GWGCWC	2 cut(s)	94, 325
Alw44I	GTGCAC	1 cut(s)	321
AlwI	GGATC	1 cut(s)	200
AoxI	GGCC	2 cut(s)	52, 130
ApaLI	GTGCAC	1 cut(s)	321
ApeKI	GCWGC	2 cut(s)	305, 334
ApoI	RAATTY	4 cut(s)	144, 158, 276, 311
AspS9I	GGNCC	2 cut(s)	52, 131
BaeGI	GKGCMC	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	145
Bbv12I	GWGCWC	2 cut(s)	94, 325
BbvI	GCAGC	2 cut(s)	292, 346
BccI	CCATC	1 cut(s)	324
BcgI	CGANNNNNNTGC	2 cut(s)	347, 381
BciT130I	CCWGG	1 cut(s)	260
BfmI	CTRYAG	2 cut(s)	306, 375
BfuAI	ACCTGC	1 cut(s)	308
BisI	GCNGC	2 cut(s)	306, 335
BlsI	GCNGC	2 cut(s)	307, 336
Bme1390I	CCNGG	1 cut(s)	260
BmgT120I	GGNCC	2 cut(s)	52, 131
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	260
BpiI	GAAGAC	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 128, 196, 395
Bse1I	ACTGG	3 cut(s)	133, 251, 400
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	335
BseLI	CCNNNNNNNGG	4 cut(s)	61, 128, 196, 395
BseNI	ACTGG	3 cut(s)	133, 251, 400
BseSI	GKGCMC	1 cut(s)	325
BseXI	GCAGC	2 cut(s)	292, 346
BshFI	GGCC	2 cut(s)	54, 132
BsiHKAI	GWGCWC	2 cut(s)	94, 325
BsiSI	CCGG	1 cut(s)	190
BslI	CCNNNNNNNGG	4 cut(s)	61, 128, 196, 395
BsnI	GGCC	2 cut(s)	54, 132
Bsp1286I	GDGCHC	2 cut(s)	94, 325
Bsp143I	GATC	1 cut(s)	192
BspANI	GGCC	2 cut(s)	54, 132
BspLI	GGNNCC	1 cut(s)	286
BspMAI	CTGCAG	1 cut(s)	310
BspMI	ACCTGC	1 cut(s)	308
BspPI	GGATC	1 cut(s)	200
BsrI	ACTGG	3 cut(s)	133, 251, 400
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	1 cut(s)	192
BssNAI	GTATAC	1 cut(s)	108
Bst1107I	GTATAC	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	2 cut(s)	89, 344
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	366
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	335
BstKTI	GATC	1 cut(s)	195
BstMBI	GATC	1 cut(s)	192
BstMWI	GCNNNNNNNGC	3 cut(s)	293, 302, 314
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	2 cut(s)	306, 375
BstSLI	GKGCMC	1 cut(s)	325
BstV1I	GCAGC	2 cut(s)	292, 346
BstV2I	GAAGAC	1 cut(s)	145
BstZ17I	GTATAC	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	54, 132
BtsCI	GGATG	1 cut(s)	335
BtsIMutI	CAGTG	1 cut(s)	349
BveI	ACCTGC	1 cut(s)	308
Cac8I	GCNNGC	1 cut(s)	366
Cfr13I	GGNCC	2 cut(s)	52, 131
Csp6I	GTAC	1 cut(s)	214
CviJI	RGCY	9 cut(s)	41, 54, 132, 172, 257, 287, 305, 337, 374
CviKI_1	RGCY	9 cut(s)	41, 54, 132, 172, 257, 287, 305, 337, 374
CviQI	GTAC	1 cut(s)	214
DpnI	GATC	1 cut(s)	194
DpnII	GATC	1 cut(s)	192
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	258
FaiI	YATR	4 cut(s)	108, 150, 272, 418
FblI	GTMKAC	1 cut(s)	107
Fnu4HI	GCNGC	2 cut(s)	306, 335
FokI	GGATG	1 cut(s)	342
Fsp4HI	GCNGC	2 cut(s)	306, 335
GluI	GCNGC	2 cut(s)	306, 335
HaeIII	GGCC	2 cut(s)	54, 132
HapII	CCGG	1 cut(s)	190
HpaII	CCGG	1 cut(s)	190
Hpy166II	GTNNAC	2 cut(s)	108, 323
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	2 cut(s)	108, 323
HpyCH4III	ACNGT	2 cut(s)	89, 344
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	4 cut(s)	274, 308, 317, 323
HpyF10VI	GCNNNNNNNGC	3 cut(s)	293, 302, 314
HpySE526I	ACGT	1 cut(s)	267
Kzo9I	GATC	1 cut(s)	192
LmnI	GCTCC	3 cut(s)	9, 177, 284
Lsp1109I	GCAGC	2 cut(s)	292, 346
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	1 cut(s)	194
MboI	GATC	1 cut(s)	192
MboII	GAAGA	2 cut(s)	150, 359
MhlI	GDGCHC	2 cut(s)	94, 325
MluCI	AATT	6 cut(s)	144, 158, 276, 311, 359, 413
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	2 cut(s)	17, 144
MslI	CAYNNNNRTG	1 cut(s)	328
MspI	CCGG	1 cut(s)	190
MspR9I	CCNGG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	3 cut(s)	293, 302, 314
NdeII	GATC	1 cut(s)	192
NlaIV	GGNNCC	1 cut(s)	286
PaqCI	CACCTGC	1 cut(s)	308
PkrI	GCNGC	2 cut(s)	307, 336
PsiI	TTATAA	1 cut(s)	418
Psp1406I	AACGTT	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	286
PspPI	GGNCC	2 cut(s)	52, 131
PstI	CTGCAG	1 cut(s)	310
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	328
SatI	GCNGC	2 cut(s)	306, 335
Sau3AI	GATC	1 cut(s)	192
Sau96I	GGNCC	2 cut(s)	52, 131
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	2 cut(s)	94, 325
SetI	ASST	9 cut(s)	43, 66, 115, 174, 237, 270, 322, 339, 391
SfcI	CTRYAG	2 cut(s)	306, 375
SmiMI	CAYNNNNRTG	1 cut(s)	328
Sse9I	AATT	6 cut(s)	144, 158, 276, 311, 359, 413
StyD4I	CCNGG	1 cut(s)	258
TaaI	ACNGT	2 cut(s)	89, 344
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	1 cut(s)	136
TasI	AATT	6 cut(s)	144, 158, 276, 311, 359, 413
TatI	WGTACW	1 cut(s)	213
TscAI	CASTG	1 cut(s)	349
TseI	GCWGC	2 cut(s)	305, 334
TspRI	CASTG	1 cut(s)	349
VneI	GTGCAC	1 cut(s)	321
XagI	CCTNNNNNAGG	1 cut(s)	59
XapI	RAATTY	4 cut(s)	144, 158, 276, 311
XmiI	GTMKAC	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.