Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005650

Physical Location & Seq

Genomic Coordinates Forward (+)

36143300 .. 36144856

Gene Structure 1557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47772.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGATGAAGGTTAGAATGGTGACGGCGACGGTGATGGTGGTGGTGGTAGGCTTTCTAACGACGAGCGCGGCGGCCAAGCTGTATAAGGTGGGAGACGAACAGGGATGGAACCCGAACGTCAATTACACTCAATGGTCCGCCGATAAGGAATTTTACGTCGGCGAGTGGCTCATATTCAATTTCGACAAGAGGTACTACAATGTGCTGGAGGTGAACAAGACCAGTTATGACAGCTGCAATGACCAAGCGTTCATAACCAACATCACCCGTGGCGGGCGAGATGTGTTTGAACTCAAAGAGGCTAGGCCGTACTACTTCCTCTCAAGCGGAGGATACTGCTACCATGGAATGAAACTTGCTCTTGTTGTCCAAGAACATCCGCCGCTTGCTCCGGCACTGGCTCCAGCTGCGTCGAATGCCTCTCCCAATTCATTAACTTCCTGCCCTCAGATGTCCATTGTGTCCCTCATTGTGATTTCAATTGCTTTGTATCACACTTTAGTTGGTGAGACTTGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

174

Amino Acids

19.26

Weight (kDa)

6.27

Isoelectric Point (pI)

33.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	36 - 117	6.5e-19	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27035
fragaria_vesca	FvH4_6g27830 FvH4_6g47772
malus_domestica	MD11G1182000.v1.1 MD15G1314400.v1.1 MD17G1054300.v1.1
prunus_persica	Prupe.3G261800_v2.0.a1 Prupe.6G154600_v2.0.a1 Prupe.6G154700_v2.0.a1
pyrus_communis	pycom17g05200
rosa_chinensis	RchiOBHm_Chr2g0166951 RchiOBHm_Chr5g0049891
rosa_laevigata	RLG00000021683 RLG00000034660
rosa_multiflora	Rmu_sc0002735.1_g000023 Rmu_sc0008387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00031480 Rroxscaffold_2G00083920
rosa_rugosa	Rorug02G0526800 Rorug05G0253600
rosa_samantha	Rh2AG593700 Rh2BG605200 Rh2CG576100 Rh2DG616700 Rh5BG339000 Rh5DG351400
rosa_wichuraiana	Rw2G049430 Rw5G031020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	68
AciI	CCGC	7 cut(s)	68, 71, 138, 273, 327, 380, 383
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	149
AfaI	GTAC	2 cut(s)	194, 311
AfiI	CCNNNNNNNGG	1 cut(s)	273
AgsI	TTSAA	3 cut(s)	178, 290, 480
AluBI	AGCT	3 cut(s)	79, 234, 407
AluI	AGCT	3 cut(s)	79, 234, 407
Alw26I	GTCTC	2 cut(s)	87, 503
AoxI	GGCC	2 cut(s)	72, 305
ApeKI	GCWGC	2 cut(s)	234, 407
ApoI	RAATTY	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	5 cut(s)	31, 43, 223, 256, 518
AvaII	GGWCC	1 cut(s)	135
BbvI	GCAGC	2 cut(s)	221, 394
BccI	CCATC	2 cut(s)	28, 99
BceAI	ACGGC	2 cut(s)	39, 292
BciVI	GTATCC	1 cut(s)	326
BcoDI	GTCTC	2 cut(s)	87, 503
BfaI	CTAG	1 cut(s)	303
BfuI	GTATCC	1 cut(s)	326
BisI	GCNGC	5 cut(s)	69, 72, 235, 383, 408
BlsI	GCNGC	5 cut(s)	70, 73, 236, 384, 409
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	2 cut(s)	110, 402
BpmI	CTGGAG	2 cut(s)	227, 387
BpuEI	CTTGAG	1 cut(s)	307
BsaJI	CCNNGG	2 cut(s)	268, 343
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
Bse1I	ACTGG	2 cut(s)	222, 402
Bse3DI	GCAATG	1 cut(s)	244
BseDI	CCNNGG	2 cut(s)	268, 343
BseGI	GGATG	2 cut(s)	110, 376
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	461
BseNI	ACTGG	2 cut(s)	222, 402
BseXI	GCAGC	2 cut(s)	221, 394
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	2 cut(s)	74, 307
BsiSI	CCGG	1 cut(s)	392
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmAI	GTCTC	2 cut(s)	87, 503
BsmBI	CGTCTC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	448
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	2 cut(s)	74, 307
Bsp19I	CCATGG	1 cut(s)	343
BspACI	CCGC	7 cut(s)	68, 71, 138, 273, 327, 380, 383
BspANI	GGCC	2 cut(s)	74, 307
BspCNI	CTCAG	1 cut(s)	460
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	2 cut(s)	110, 402
BsrDI	GCAATG	1 cut(s)	244
BsrI	ACTGG	2 cut(s)	222, 402
BssECI	CCNNGG	2 cut(s)	268, 343
BssT1I	CCWWGG	1 cut(s)	343
Bst4CI	ACNGT	1 cut(s)	31
BstC8I	GCNNGC	2 cut(s)	275, 387
BstDEI	CTNAG	1 cut(s)	447
BstDSI	CCRYGG	2 cut(s)	268, 343
BstF5I	GGATG	2 cut(s)	110, 376
BstFNI	CGCG	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	68
BstMAI	GTCTC	2 cut(s)	87, 503
BstMWI	GCNNNNNNNGC	2 cut(s)	407, 416
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	2 cut(s)	221, 394
BsuI	GTATCC	1 cut(s)	326
BsuRI	GGCC	2 cut(s)	74, 307
BtgI	CCRYGG	2 cut(s)	268, 343
BtsCI	GGATG	2 cut(s)	110, 376
BtsIMutI	CAGTG	1 cut(s)	395
Cac8I	GCNNGC	2 cut(s)	275, 387
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	135
CseI	GACGC	1 cut(s)	399
Csp6I	GTAC	2 cut(s)	193, 310
CviAII	CATG	1 cut(s)	344
CviJI	RGCY	9 cut(s)	51, 74, 79, 169, 234, 302, 307, 401, 407
CviKI_1	RGCY	9 cut(s)	51, 74, 79, 169, 234, 302, 307, 401, 407
CviQI	GTAC	2 cut(s)	193, 310
DdeI	CTNAG	1 cut(s)	447
EaeI	YGGCCR	1 cut(s)	72
EciI	GGCGGA	2 cut(s)	127, 369
Eco130I	CCWWGG	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	343
Esp3I	CGTCTC	1 cut(s)	87
FaeI	CATG	1 cut(s)	347
FaiI	YATR	5 cut(s)	84, 173, 228, 254, 345
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	1 cut(s)	343
FauI	CCCGC	1 cut(s)	266
Fnu4HI	GCNGC	5 cut(s)	69, 72, 235, 383, 408
FokI	GGATG	2 cut(s)	117, 363
Fsp4HI	GCNGC	5 cut(s)	69, 72, 235, 383, 408
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	5 cut(s)	69, 72, 235, 383, 408
GsuI	CTGGAG	2 cut(s)	227, 387
HaeIII	GGCC	2 cut(s)	74, 307
HapII	CCGG	1 cut(s)	392
HgaI	GACGC	1 cut(s)	399
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	1 cut(s)	347
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	5 cut(s)	31, 43, 223, 256, 518
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	1 cut(s)	450
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	4 cut(s)	31, 64, 161, 415
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	2 cut(s)	117, 156
HpyCH4V	TGCA	2 cut(s)	237, 516
HpyF10VI	GCNNNNNNNGC	2 cut(s)	407, 416
HpyF3I	CTNAG	1 cut(s)	447
HpySE526I	ACGT	2 cut(s)	117, 156
Hsp92II	CATG	1 cut(s)	347
HspAI	GCGC	1 cut(s)	66
LmnI	GCTCC	2 cut(s)	394, 406
LpnPI	CCDG	7 cut(s)	86, 191, 235, 383, 405, 417, 454
Lsp1109I	GCAGC	2 cut(s)	221, 394
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	2 cut(s)	117, 156
MaeIII	GTNAC	1 cut(s)	19
MfeI	CAATTG	1 cut(s)	480
MluCI	AATT	6 cut(s)	121, 149, 178, 427, 480, 517
MnlI	CCTC	8 cut(s)	183, 202, 292, 323, 329, 430, 456, 476
MseI	TTAA	2 cut(s)	434, 520
MspA1I	CMGCKG	2 cut(s)	234, 407
MspI	CCGG	1 cut(s)	392
MunI	CAATTG	1 cut(s)	480
Mva1269I	GAATGC	1 cut(s)	421
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	2 cut(s)	407, 416
NcoI	CCATGG	1 cut(s)	343
NlaIII	CATG	1 cut(s)	347
NlaIV	GGNNCC	2 cut(s)	110, 402
NmuCI	GTSAC	1 cut(s)	19
PctI	GAATGC	1 cut(s)	421
PkrI	GCNGC	5 cut(s)	70, 73, 236, 384, 409
PspN4I	GGNNCC	2 cut(s)	110, 402
PspPI	GGNCC	1 cut(s)	135
PsrI	GAACNNNNNNTAC	2 cut(s)	107, 139
PvuII	CAGCTG	2 cut(s)	234, 407
RsaI	GTAC	2 cut(s)	194, 311
RsaNI	GTAC	2 cut(s)	193, 310
SaqAI	TTAA	2 cut(s)	434, 520
SatI	GCNGC	5 cut(s)	69, 72, 235, 383, 408
Sau96I	GGNCC	1 cut(s)	135
SetI	ASST	9 cut(s)	12, 81, 90, 120, 159, 194, 213, 236, 409
SinI	GGWCC	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
Sse9I	AATT	6 cut(s)	121, 149, 178, 427, 480, 517
SsiI	CCGC	7 cut(s)	68, 71, 138, 273, 327, 380, 383
SspMI	CTAG	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	2 cut(s)	120, 159
TaqI	TCGA	2 cut(s)	183, 413
TasI	AATT	6 cut(s)	121, 149, 178, 427, 480, 517
TauI	GCSGC	3 cut(s)	71, 74, 385
Tru1I	TTAA	2 cut(s)	434, 520
Tru9I	TTAA	2 cut(s)	434, 520
TscAI	CASTG	1 cut(s)	402
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	2 cut(s)	234, 407
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	4 cut(s)	20, 241, 365, 420
TspRI	CASTG	1 cut(s)	402
VpaK11BI	GGWCC	1 cut(s)	135
XapI	RAATTY	1 cut(s)	149
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.