Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005650

Physical Location & Seq

Genomic Coordinates Forward (+)

82495280 .. 82497041

Gene Structure 1762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG593700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGATGAGGATTAGAATGGTGACGGTGACGGTGATGGTGGTGGTGGTGGGGTTTCTAACGACGAGCGCGGCGGCCAAGCTGCATAAGGTGGGAGACGAACAAGGATGGAATCCGAACGTCAATTACACTCAATGGTCCGCCGATAAGGAATTTTACGTCGGTGAATGGCTCATATTTAATTTCGACAAGAGGTACTACACTGCACTGGAGGTGAACAAGACCAGTTTTGACAGCTGCAATGACAAAGTTTTCATAACCAACATCACCCGCGGCGGGCGAGATGTGTTTGAACTGAAGGAGGCTAGGCCGTACTACTTCCTCTCAAGCGGAGGCTACTGCTACCATGGAATGAAACTTGCTCTTGTTGTCCAAGAACAGCCCCCGCTTGCTCCGGCACAGGCTCCAGCCCTGAATGCTTCTCCCAATTCATTAACCTCCTGCGCTAAAATCTCCATTCTGTCCCTCATTGTGGTTTTCTTTGCTTTGATGACCAACTTTAGTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

168

Amino Acids

18.93

Weight (kDa)

8.41

Isoelectric Point (pI)

30.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	36 - 117	1.8e-16	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27035
fragaria_vesca	FvH4_6g27830 FvH4_6g47772
malus_domestica	MD11G1182000.v1.1 MD15G1314400.v1.1 MD17G1054300.v1.1
prunus_persica	Prupe.3G261800_v2.0.a1 Prupe.6G154600_v2.0.a1 Prupe.6G154700_v2.0.a1
pyrus_communis	pycom17g05200
rosa_chinensis	RchiOBHm_Chr2g0166951 RchiOBHm_Chr5g0049891
rosa_laevigata	RLG00000021683 RLG00000034660
rosa_multiflora	Rmu_sc0002735.1_g000023 Rmu_sc0008387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00031480 Rroxscaffold_2G00083920
rosa_rugosa	Rorug02G0526800 Rorug05G0253600
rosa_samantha	Rh2AG593700 Rh2BG605200 Rh2CG576100 Rh2DG616700 Rh5BG339000 Rh5DG351400
rosa_wichuraiana	Rw2G049430 Rw5G031020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	68, 270
AciI	CCGC	8 cut(s)	68, 71, 138, 268, 270, 273, 327, 383
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	314
AfaI	GTAC	2 cut(s)	194, 311
AfiI	CCNNNNNNNGG	2 cut(s)	273, 469
AgsI	TTSAA	1 cut(s)	290
AluBI	AGCT	2 cut(s)	79, 234
AluI	AGCT	2 cut(s)	79, 234
Alw26I	GTCTC	1 cut(s)	87
AoxI	GGCC	2 cut(s)	72, 305
ApeKI	GCWGC	2 cut(s)	79, 234
ApoI	RAATTY	1 cut(s)	149
AspLEI	GCGC	2 cut(s)	68, 443
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	6 cut(s)	31, 37, 43, 173, 223, 256
AvaII	GGWCC	1 cut(s)	135
BbvI	GCAGC	2 cut(s)	66, 221
BccI	CCATC	2 cut(s)	28, 99
BceAI	ACGGC	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	87
BfaI	CTAG	1 cut(s)	303
BisI	GCNGC	5 cut(s)	69, 72, 80, 235, 271
BlsI	GCNGC	5 cut(s)	70, 73, 81, 236, 272
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	402
BpmI	CTGGAG	2 cut(s)	227, 387
BpuEI	CTTGAG	1 cut(s)	307
BsaJI	CCNNGG	2 cut(s)	268, 343
Bsc4I	CCNNNNNNNGG	2 cut(s)	273, 469
Bse1I	ACTGG	2 cut(s)	210, 222
Bse3DI	GCAATG	1 cut(s)	244
BseDI	CCNNGG	2 cut(s)	268, 343
BseGI	GGATG	1 cut(s)	110
BseLI	CCNNNNNNNGG	2 cut(s)	273, 469
BseMI	GCAATG	1 cut(s)	244
BseNI	ACTGG	2 cut(s)	210, 222
BseXI	GCAGC	2 cut(s)	66, 221
BsgI	GTGCAG	1 cut(s)	186
Bsh1236I	CGCG	2 cut(s)	68, 270
BshFI	GGCC	2 cut(s)	74, 307
BsiSI	CCGG	1 cut(s)	392
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	2 cut(s)	273, 469
BsmAI	GTCTC	1 cut(s)	87
BsmBI	CGTCTC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	445
BsmI	GAATGC	1 cut(s)	418
BsnI	GGCC	2 cut(s)	74, 307
Bsp19I	CCATGG	1 cut(s)	343
BspACI	CCGC	8 cut(s)	68, 71, 138, 268, 270, 273, 327, 383
BspANI	GGCC	2 cut(s)	74, 307
BspFNI	CGCG	2 cut(s)	68, 270
BspLI	GGNNCC	1 cut(s)	402
BsrDI	GCAATG	1 cut(s)	244
BsrI	ACTGG	2 cut(s)	210, 222
BssECI	CCNNGG	2 cut(s)	268, 343
BssT1I	CCWWGG	1 cut(s)	343
Bst4CI	ACNGT	2 cut(s)	25, 31
BstC8I	GCNNGC	2 cut(s)	275, 387
BstDSI	CCRYGG	2 cut(s)	268, 343
BstF5I	GGATG	1 cut(s)	110
BstFNI	CGCG	2 cut(s)	68, 270
BstHHI	GCGC	2 cut(s)	68, 443
BstMAI	GTCTC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstUI	CGCG	2 cut(s)	68, 270
BstV1I	GCAGC	2 cut(s)	66, 221
BsuRI	GGCC	2 cut(s)	74, 307
BtgI	CCRYGG	2 cut(s)	268, 343
BtsCI	GGATG	1 cut(s)	110
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	198, 203
Cac8I	GCNNGC	2 cut(s)	275, 387
CfoI	GCGC	2 cut(s)	68, 443
Cfr13I	GGNCC	1 cut(s)	135
Cfr42I	CCGCGG	1 cut(s)	271
Csp6I	GTAC	2 cut(s)	193, 310
CviAII	CATG	1 cut(s)	344
CviQI	GTAC	2 cut(s)	193, 310
EaeI	YGGCCR	1 cut(s)	72
EciI	GGCGGA	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	343
Esp3I	CGTCTC	1 cut(s)	87
FaeI	CATG	1 cut(s)	347
FaiI	YATR	4 cut(s)	84, 173, 254, 345
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	1 cut(s)	343
FauI	CCCGC	3 cut(s)	266, 275, 390
Fnu4HI	GCNGC	5 cut(s)	69, 72, 80, 235, 271
FokI	GGATG	1 cut(s)	117
Fsp4HI	GCNGC	5 cut(s)	69, 72, 80, 235, 271
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	2 cut(s)	67, 442
GluI	GCNGC	5 cut(s)	69, 72, 80, 235, 271
GsuI	CTGGAG	2 cut(s)	227, 387
HaeIII	GGCC	2 cut(s)	74, 307
HapII	CCGG	1 cut(s)	392
HhaI	GCGC	2 cut(s)	68, 443
Hin1II	CATG	1 cut(s)	347
Hin6I	GCGC	2 cut(s)	66, 441
HinP1I	GCGC	2 cut(s)	66, 441
HinfI	GANTC	1 cut(s)	109
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	6 cut(s)	31, 37, 43, 173, 223, 256
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	1 cut(s)	114
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	2 cut(s)	64, 161
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	2 cut(s)	25, 31
HpyCH4IV	ACGT	2 cut(s)	117, 156
HpyCH4V	TGCA	3 cut(s)	82, 203, 237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpySE526I	ACGT	2 cut(s)	117, 156
Hsp92II	CATG	1 cut(s)	347
HspAI	GCGC	2 cut(s)	66, 441
KspI	CCGCGG	1 cut(s)	271
LmnI	GCTCC	2 cut(s)	394, 406
LpnPI	CCDG	7 cut(s)	191, 235, 383, 405, 417, 422, 451
Lsp1109I	GCAGC	2 cut(s)	66, 221
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	2 cut(s)	117, 156
MaeIII	GTNAC	2 cut(s)	19, 25
MluCI	AATT	4 cut(s)	121, 149, 178, 424
MnlI	CCTC	7 cut(s)	183, 202, 292, 323, 329, 445, 473
MseI	TTAA	2 cut(s)	177, 431
MspA1I	CMGCKG	2 cut(s)	234, 270
MspI	CCGG	1 cut(s)	392
Mva1269I	GAATGC	1 cut(s)	418
MvnI	CGCG	2 cut(s)	68, 270
MwoI	GCNNNNNNNGC	1 cut(s)	413
NcoI	CCATGG	1 cut(s)	343
NlaIII	CATG	1 cut(s)	347
NlaIV	GGNNCC	1 cut(s)	402
NmuCI	GTSAC	2 cut(s)	19, 25
PctI	GAATGC	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	109
PkrI	GCNGC	5 cut(s)	70, 73, 81, 236, 272
PspN4I	GGNNCC	1 cut(s)	402
PspPI	GGNCC	1 cut(s)	135
PsrI	GAACNNNNNNTAC	2 cut(s)	107, 139
PvuII	CAGCTG	1 cut(s)	234
RsaI	GTAC	2 cut(s)	194, 311
RsaNI	GTAC	2 cut(s)	193, 310
SacII	CCGCGG	1 cut(s)	271
SaqAI	TTAA	2 cut(s)	177, 431
SatI	GCNGC	5 cut(s)	69, 72, 80, 235, 271
Sau96I	GGNCC	1 cut(s)	135
SetI	ASST	8 cut(s)	81, 90, 120, 159, 194, 213, 236, 437
Sfr303I	CCGCGG	1 cut(s)	271
SgrBI	CCGCGG	1 cut(s)	271
SinI	GGWCC	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
Sse9I	AATT	4 cut(s)	121, 149, 178, 424
SsiI	CCGC	8 cut(s)	68, 71, 138, 268, 270, 273, 327, 383
SspMI	CTAG	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	2 cut(s)	25, 31
TaiI	ACGT	2 cut(s)	120, 159
TaqI	TCGA	1 cut(s)	183
TasI	AATT	4 cut(s)	121, 149, 178, 424
TauI	GCSGC	3 cut(s)	71, 74, 273
TfiI	GAWTC	1 cut(s)	109
Tru1I	TTAA	2 cut(s)	177, 431
Tru9I	TTAA	2 cut(s)	177, 431
TscAI	CASTG	2 cut(s)	205, 210
TseFI	GTSAC	2 cut(s)	19, 25
TseI	GCWGC	2 cut(s)	79, 234
Tsp45I	GTSAC	2 cut(s)	19, 25
TspDTI	ATGAA	3 cut(s)	241, 365, 417
TspRI	CASTG	2 cut(s)	205, 210
VpaK11BI	GGWCC	1 cut(s)	135
XapI	RAATTY	1 cut(s)	149
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.