Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005650

Physical Location & Seq

Genomic Coordinates Forward (+)

75586755 .. 75588085

Gene Structure 1331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG576100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTTGAGGATTAGAATGGTGACGGTGACGGTGACGGTGATGGTGGTGGTGGTGGGGTTTCTAACGACGAGCGCGGCGGCCAAGCTGCATAAGGTGGGAGACGAACAAGGATGGAATCCGAACGTCAATTACACTCAATGGTCCGCCGATAAGGAATTTTACGTCGGTGAATGGCTCATATTTAATTTCGACAAGAGGTACTACACTGCACTGGAGGTGAACGAGACCAGTTTTGACAGCTGCAATGACAAAGTTTTCATAACCAACATCACCCGTGGCGGGCGAGATGTGTTTGAACTGAAGGAGGCTAGGCCGTACTACTTCCTCTCAAGCGGAGGCTACTGCTACCATGGAATGAAACTTGCTCTTGTTGTCCAAGAACAGCCCCCGCTTGCTCCGGCACAGGCTCCAGCCCTGAATGCTTCTCCCAATTCATTAACCTCCTGCGCTACAATCTCCATTCTGTCCCTCATTGTGGTTTCCTTTGCTTTGATGACCAACTTTAGTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

170

Amino Acids

19.03

Weight (kDa)

6.09

Isoelectric Point (pI)

30.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	38 - 119	2.8e-16	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27035
fragaria_vesca	FvH4_6g27830 FvH4_6g47772
malus_domestica	MD11G1182000.v1.1 MD15G1314400.v1.1 MD17G1054300.v1.1
prunus_persica	Prupe.3G261800_v2.0.a1 Prupe.6G154600_v2.0.a1 Prupe.6G154700_v2.0.a1
pyrus_communis	pycom17g05200
rosa_chinensis	RchiOBHm_Chr2g0166951 RchiOBHm_Chr5g0049891
rosa_laevigata	RLG00000021683 RLG00000034660
rosa_multiflora	Rmu_sc0002735.1_g000023 Rmu_sc0008387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00031480 Rroxscaffold_2G00083920
rosa_rugosa	Rorug02G0526800 Rorug05G0253600
rosa_samantha	Rh2AG593700 Rh2BG605200 Rh2CG576100 Rh2DG616700 Rh5BG339000 Rh5DG351400
rosa_wichuraiana	Rw2G049430 Rw5G031020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	74
AciI	CCGC	6 cut(s)	74, 77, 144, 279, 333, 389
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	155
AcuI	CTGAAG	1 cut(s)	320
AfaI	GTAC	2 cut(s)	200, 317
AfiI	CCNNNNNNNGG	2 cut(s)	279, 475
AgsI	TTSAA	1 cut(s)	296
AluBI	AGCT	2 cut(s)	85, 240
AluI	AGCT	2 cut(s)	85, 240
Alw26I	GTCTC	2 cut(s)	93, 218
AoxI	GGCC	2 cut(s)	78, 311
ApeKI	GCWGC	2 cut(s)	85, 240
ApoI	RAATTY	1 cut(s)	155
AspLEI	GCGC	2 cut(s)	74, 449
AspS9I	GGNCC	1 cut(s)	141
AsuHPI	GGTGA	7 cut(s)	31, 37, 43, 49, 179, 229, 262
AvaII	GGWCC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	72, 227
BccI	CCATC	2 cut(s)	34, 105
BceAI	ACGGC	1 cut(s)	298
BcoDI	GTCTC	2 cut(s)	93, 218
BfaI	CTAG	1 cut(s)	309
BisI	GCNGC	4 cut(s)	75, 78, 86, 241
BlsI	GCNGC	4 cut(s)	76, 79, 87, 242
Bme18I	GGWCC	1 cut(s)	141
BmgT120I	GGNCC	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	408
BpmI	CTGGAG	2 cut(s)	233, 393
BpuEI	CTTGAG	1 cut(s)	313
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	274, 349
Bsc4I	CCNNNNNNNGG	2 cut(s)	279, 475
Bse1I	ACTGG	2 cut(s)	216, 228
Bse3DI	GCAATG	1 cut(s)	250
BseDI	CCNNGG	2 cut(s)	274, 349
BseGI	GGATG	1 cut(s)	116
BseLI	CCNNNNNNNGG	2 cut(s)	279, 475
BseMI	GCAATG	1 cut(s)	250
BseNI	ACTGG	2 cut(s)	216, 228
BseXI	GCAGC	2 cut(s)	72, 227
BsgI	GTGCAG	1 cut(s)	192
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	2 cut(s)	80, 313
BsiSI	CCGG	1 cut(s)	398
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	2 cut(s)	279, 475
BsmAI	GTCTC	2 cut(s)	93, 218
BsmBI	CGTCTC	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	451
BsmI	GAATGC	1 cut(s)	424
BsnI	GGCC	2 cut(s)	80, 313
Bso31I	GGTCTC	1 cut(s)	218
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	6 cut(s)	74, 77, 144, 279, 333, 389
BspANI	GGCC	2 cut(s)	80, 313
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	1 cut(s)	408
BspTNI	GGTCTC	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	250
BsrI	ACTGG	2 cut(s)	216, 228
BssECI	CCNNGG	2 cut(s)	274, 349
BssT1I	CCWWGG	1 cut(s)	349
Bst4CI	ACNGT	3 cut(s)	25, 31, 37
BstC8I	GCNNGC	2 cut(s)	281, 393
BstDSI	CCRYGG	2 cut(s)	274, 349
BstF5I	GGATG	1 cut(s)	116
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	2 cut(s)	74, 449
BstMAI	GTCTC	2 cut(s)	93, 218
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	2 cut(s)	72, 227
BsuRI	GGCC	2 cut(s)	80, 313
BtgI	CCRYGG	2 cut(s)	274, 349
BtsCI	GGATG	1 cut(s)	116
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	204, 209
Cac8I	GCNNGC	2 cut(s)	281, 393
CfoI	GCGC	2 cut(s)	74, 449
Cfr13I	GGNCC	1 cut(s)	141
Csp6I	GTAC	2 cut(s)	199, 316
CviAII	CATG	1 cut(s)	350
CviQI	GTAC	2 cut(s)	199, 316
EaeI	YGGCCR	1 cut(s)	78
EciI	GGCGGA	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	349
Eco31I	GGTCTC	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	320
EcoT14I	CCWWGG	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	349
Esp3I	CGTCTC	1 cut(s)	93
FaeI	CATG	1 cut(s)	353
FaiI	YATR	4 cut(s)	90, 179, 260, 351
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	1 cut(s)	349
FauI	CCCGC	2 cut(s)	272, 396
Fnu4HI	GCNGC	4 cut(s)	75, 78, 86, 241
FokI	GGATG	1 cut(s)	123
Fsp4HI	GCNGC	4 cut(s)	75, 78, 86, 241
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	2 cut(s)	73, 448
GluI	GCNGC	4 cut(s)	75, 78, 86, 241
GsuI	CTGGAG	2 cut(s)	233, 393
HaeIII	GGCC	2 cut(s)	80, 313
HapII	CCGG	1 cut(s)	398
HhaI	GCGC	2 cut(s)	74, 449
Hin1II	CATG	1 cut(s)	353
Hin6I	GCGC	2 cut(s)	72, 447
HinP1I	GCGC	2 cut(s)	72, 447
HinfI	GANTC	1 cut(s)	115
HpaII	CCGG	1 cut(s)	398
HphI	GGTGA	7 cut(s)	31, 37, 43, 49, 179, 229, 262
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	120
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	2 cut(s)	70, 167
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	3 cut(s)	25, 31, 37
HpyCH4IV	ACGT	2 cut(s)	123, 162
HpyCH4V	TGCA	3 cut(s)	88, 209, 243
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpySE526I	ACGT	2 cut(s)	123, 162
Hsp92II	CATG	1 cut(s)	353
HspAI	GCGC	2 cut(s)	72, 447
LmnI	GCTCC	2 cut(s)	400, 412
LpnPI	CCDG	7 cut(s)	197, 241, 389, 411, 423, 428, 457
Lsp1109I	GCAGC	2 cut(s)	72, 227
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	2 cut(s)	123, 162
MaeIII	GTNAC	3 cut(s)	19, 25, 31
MluCI	AATT	4 cut(s)	127, 155, 184, 430
MnlI	CCTC	7 cut(s)	189, 208, 298, 329, 335, 451, 479
MseI	TTAA	2 cut(s)	183, 437
MspA1I	CMGCKG	1 cut(s)	240
MspI	CCGG	1 cut(s)	398
Mva1269I	GAATGC	1 cut(s)	424
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	419
NcoI	CCATGG	1 cut(s)	349
NlaIII	CATG	1 cut(s)	353
NlaIV	GGNNCC	1 cut(s)	408
NmuCI	GTSAC	3 cut(s)	19, 25, 31
PctI	GAATGC	1 cut(s)	424
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	4 cut(s)	76, 79, 87, 242
PspN4I	GGNNCC	1 cut(s)	408
PspPI	GGNCC	1 cut(s)	141
PsrI	GAACNNNNNNTAC	2 cut(s)	113, 145
PvuII	CAGCTG	1 cut(s)	240
RsaI	GTAC	2 cut(s)	200, 317
RsaNI	GTAC	2 cut(s)	199, 316
SaqAI	TTAA	2 cut(s)	183, 437
SatI	GCNGC	4 cut(s)	75, 78, 86, 241
Sau96I	GGNCC	1 cut(s)	141
SetI	ASST	8 cut(s)	87, 96, 126, 165, 200, 219, 242, 443
SinI	GGWCC	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
Sse9I	AATT	4 cut(s)	127, 155, 184, 430
SsiI	CCGC	6 cut(s)	74, 77, 144, 279, 333, 389
SspMI	CTAG	1 cut(s)	309
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	3 cut(s)	25, 31, 37
TaiI	ACGT	2 cut(s)	126, 165
TaqI	TCGA	1 cut(s)	189
TasI	AATT	4 cut(s)	127, 155, 184, 430
TauI	GCSGC	2 cut(s)	77, 80
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	2 cut(s)	183, 437
Tru9I	TTAA	2 cut(s)	183, 437
TscAI	CASTG	2 cut(s)	211, 216
TseFI	GTSAC	3 cut(s)	19, 25, 31
TseI	GCWGC	2 cut(s)	85, 240
Tsp45I	GTSAC	3 cut(s)	19, 25, 31
TspDTI	ATGAA	3 cut(s)	247, 371, 423
TspRI	CASTG	2 cut(s)	211, 216
VpaK11BI	GGWCC	1 cut(s)	141
XapI	RAATTY	1 cut(s)	155
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.