Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005650

Physical Location & Seq

Genomic Coordinates Reverse (-)

3599826 .. 3601000

Gene Structure 1175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g05200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGATGAGTTCGGGAGTGATGGCGGCGGTGGTAATAACGGTGGGGTGGCTAATGGCGTCTGCAACTGCTATTCTGCATAAGGTGGGAGGCAAACAGGGTTGGGATCAGAACGTCAATTACACTGAGTGGGCGGCAAATGAACAGAGGTACTACAATGTTCTGGAGGTGAACAAGACGAGCTACGAGAACTGCAATGATCAAGGCTTCATAAAGAACATAACCCGGGGAGGGCGAGATGTGTATCAACTCACAGAGGCAAGGCTGTATTACTTCCTCTCCGGCGGAGGTTACTGCTGGCATGGCATGAAACTTTATCTGATTGTCCACGATGGACTCCCACCTGCTCCGGAACTCGCTCCAGCACTTGCTCCGGCTACAAGTGTTGCTTCTCCTCCAAATTCACTAACCTCCTCCGCCGCTGAGATGTTGTTTCTATCCATTGCGCTTTGCTTAGCTTTAATGTGGACGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

158

Amino Acids

17.17

Weight (kDa)

5.85

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27035
fragaria_vesca	FvH4_6g27830 FvH4_6g47772
malus_domestica	MD11G1182000.v1.1 MD15G1314400.v1.1 MD17G1054300.v1.1
prunus_persica	Prupe.3G261800_v2.0.a1 Prupe.6G154600_v2.0.a1 Prupe.6G154700_v2.0.a1
pyrus_communis	pycom17g05200
rosa_chinensis	RchiOBHm_Chr2g0166951 RchiOBHm_Chr5g0049891
rosa_laevigata	RLG00000021683 RLG00000034660
rosa_multiflora	Rmu_sc0002735.1_g000023 Rmu_sc0008387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00031480 Rroxscaffold_2G00083920
rosa_rugosa	Rorug02G0526800 Rorug05G0253600
rosa_samantha	Rh2AG593700 Rh2BG605200 Rh2CG576100 Rh2DG616700 Rh5BG339000 Rh5DG351400
rosa_wichuraiana	Rw2G049430 Rw5G031020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	349
Acc36I	ACCTGC	1 cut(s)	349
AccIII	TCCGGA	1 cut(s)	346
AciI	CCGC	6 cut(s)	23, 26, 131, 282, 414, 417
AclWI	GGATC	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	397
AcyI	GRCGYC	1 cut(s)	56
AdeI	CACNNNGTG	1 cut(s)	126
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	228
AluBI	AGCT	2 cut(s)	180, 455
AluI	AGCT	2 cut(s)	180, 455
AlwI	GGATC	1 cut(s)	111
Ama87I	CYCGRG	1 cut(s)	222
Aor13HI	TCCGGA	1 cut(s)	346
ApoI	RAATTY	1 cut(s)	397
AspLEI	GCGC	1 cut(s)	445
AsuC2I	CCSGG	2 cut(s)	223, 224
AsuHPI	GGTGA	1 cut(s)	178
AvaI	CYCGRG	1 cut(s)	222
BccI	CCATC	2 cut(s)	13, 323
BclI	TGATCA	1 cut(s)	196
BcnI	CCSGG	2 cut(s)	223, 224
BfaI	CTAG	1 cut(s)	472
BfuAI	ACCTGC	1 cut(s)	349
BisI	GCNGC	3 cut(s)	24, 132, 417
BlpI	GCTNAGC	1 cut(s)	451
BlsI	GCNGC	3 cut(s)	25, 133, 418
Bme1390I	CCNGG	2 cut(s)	223, 224
BmeT110I	CYCGRG	1 cut(s)	222
BmrFI	CCNGG	2 cut(s)	223, 224
BpmI	CTGGAG	2 cut(s)	182, 342
Bpu1102I	GCTNAGC	1 cut(s)	451
BpuMI	CCSGG	2 cut(s)	223, 224
BsaBI	GATNNNNATC	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	222, 223
BsaWI	WCCGGW	1 cut(s)	346
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse3DI	GCAATG	2 cut(s)	199, 438
Bse8I	GATNNNNATC	1 cut(s)	240
BseAI	TCCGGA	1 cut(s)	346
BseDI	CCNNGG	2 cut(s)	222, 223
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMI	GCAATG	2 cut(s)	199, 438
BseMII	CTCAG	2 cut(s)	114, 411
BseRI	GAGGAG	2 cut(s)	381, 400
BsiHKCI	CYCGRG	1 cut(s)	222
BsiSI	CCGG	4 cut(s)	223, 279, 347, 371
BslI	CCNNNNNNNGG	1 cut(s)	228
BsoBI	CYCGRG	1 cut(s)	222
Bsp13I	TCCGGA	1 cut(s)	346
Bsp143I	GATC	2 cut(s)	103, 196
Bsp1720I	GCTNAGC	1 cut(s)	451
BspACI	CCGC	6 cut(s)	23, 26, 131, 282, 414, 417
BspCNI	CTCAG	2 cut(s)	115, 412
BspEI	TCCGGA	1 cut(s)	346
BspMI	ACCTGC	1 cut(s)	349
BspPI	GGATC	1 cut(s)	111
BsrDI	GCAATG	2 cut(s)	199, 438
BssECI	CCNNGG	2 cut(s)	222, 223
BssMI	GATC	2 cut(s)	103, 196
BssNI	GRCGYC	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	40
BstACI	GRCGYC	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	296
BstDEI	CTNAG	3 cut(s)	123, 420, 451
BstHHI	GCGC	1 cut(s)	445
BstKTI	GATC	2 cut(s)	106, 199
BstMBI	GATC	2 cut(s)	103, 196
BstMWI	GCNNNNNNNGC	1 cut(s)	300
BstSCI	CCNGG	2 cut(s)	221, 222
BtsIMutI	CAGTG	1 cut(s)	120
BveI	ACCTGC	1 cut(s)	349
Cac8I	GCNNGC	1 cut(s)	296
CfoI	GCGC	1 cut(s)	445
Cfr9I	CCCGGG	1 cut(s)	222
CseI	GACGC	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	2 cut(s)	299, 304
CviJI	RGCY	6 cut(s)	49, 180, 204, 262, 374, 455
CviKI_1	RGCY	6 cut(s)	49, 180, 204, 262, 374, 455
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	3 cut(s)	123, 420, 451
DpnI	GATC	2 cut(s)	105, 198
DpnII	GATC	2 cut(s)	103, 196
DraIII	CACNNNGTG	1 cut(s)	126
EciI	GGCGGA	2 cut(s)	297, 403
Eco88I	CYCGRG	1 cut(s)	222
FaeI	CATG	2 cut(s)	302, 307
FaiI	YATR	5 cut(s)	78, 209, 218, 300, 305
FalI	AAGNNNNNCTT	2 cut(s)	370, 402
FatI	CATG	2 cut(s)	298, 303
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	3 cut(s)	24, 132, 417
Fsp4HI	GCNGC	3 cut(s)	24, 132, 417
FspBI	CTAG	1 cut(s)	472
GlaI	GCGC	1 cut(s)	444
GluI	GCNGC	3 cut(s)	24, 132, 417
GsuI	CTGGAG	2 cut(s)	182, 342
HapII	CCGG	4 cut(s)	223, 279, 347, 371
HgaI	GACGC	1 cut(s)	45
HhaI	GCGC	1 cut(s)	445
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	2 cut(s)	302, 307
Hin6I	GCGC	1 cut(s)	443
HinP1I	GCGC	1 cut(s)	443
HinfI	GANTC	1 cut(s)	333
HpaII	CCGG	4 cut(s)	223, 279, 347, 371
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	3 cut(s)	169, 325, 465
Hpy188I	TCNGA	2 cut(s)	108, 318
Hpy188III	TCNNGA	3 cut(s)	12, 161, 347
Hpy8I	GTNNAC	3 cut(s)	169, 325, 465
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	3 cut(s)	62, 76, 192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	300
HpyF3I	CTNAG	3 cut(s)	123, 420, 451
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	2 cut(s)	302, 307
HspAI	GCGC	1 cut(s)	443
Kpn2I	TCCGGA	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	103, 196
LmnI	GCTCC	3 cut(s)	349, 361, 373
LpnPI	CCDG	9 cut(s)	80, 146, 236, 280, 292, 354, 360, 372, 384
MaeI	CTAG	1 cut(s)	472
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	2 cut(s)	105, 198
MboI	GATC	2 cut(s)	103, 196
MluCI	AATT	2 cut(s)	115, 397
MlyI	GAGTC	1 cut(s)	327
MroI	TCCGGA	1 cut(s)	346
MseI	TTAA	1 cut(s)	458
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	4 cut(s)	223, 279, 347, 371
MspR9I	CCNGG	2 cut(s)	223, 224
MwoI	GCNNNNNNNGC	1 cut(s)	300
NciI	CCSGG	2 cut(s)	223, 224
NdeII	GATC	2 cut(s)	103, 196
NlaIII	CATG	2 cut(s)	302, 307
PaqCI	CACCTGC	1 cut(s)	349
PkrI	GCNGC	3 cut(s)	25, 133, 418
PleI	GAGTC	1 cut(s)	327
PpsI	GAGTC	1 cut(s)	327
PsrI	GAACNNNNNNTAC	2 cut(s)	101, 133
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	458
SatI	GCNGC	3 cut(s)	24, 132, 417
Sau3AI	GATC	2 cut(s)	103, 196
SchI	GAGTC	1 cut(s)	327
ScrFI	CCNGG	2 cut(s)	223, 224
SetI	ASST	9 cut(s)	84, 114, 149, 168, 182, 289, 343, 410, 457
SmaI	CCCGGG	1 cut(s)	224
Sse9I	AATT	2 cut(s)	115, 397
SsiI	CCGC	6 cut(s)	23, 26, 131, 282, 414, 417
SspMI	CTAG	1 cut(s)	472
StyD4I	CCNGG	2 cut(s)	221, 222
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	1 cut(s)	114
TasI	AATT	2 cut(s)	115, 397
TauI	GCSGC	3 cut(s)	26, 134, 419
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TscAI	CASTG	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	153, 196, 320
TspMI	CCCGGG	1 cut(s)	222
TspRI	CASTG	1 cut(s)	127
XapI	RAATTY	1 cut(s)	397
XmaI	CCCGGG	1 cut(s)	222
XspI	CTAG	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.