RLG00000034660

Lamin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005650
Physical Location & Seq
Forward (+)
47391453 .. 47392043
591 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034660

Sequence Viewer

Length: 513 bp
ATGGAGGGTTTGAAAAACAGAGTTGAGTGGTTGATGAGCGTGCTAGTGATAGTGATAATGATGATACTAATGCCGCATGCTGTTGAATCCAGGGAGCCAGTGCTTCATAGGGTAGGAGGGGGGAGGTTCACTTGGGCCCCCGATATTAACTTCACTGATTGGTCAAGTAAAGAGCATTTCTATGTAGGCGATTGGCTCTATTTTGGGTTTGACAAACATATCTACAACGTCCTTGAGGTAAACAAGACCAGTTACGAGAATTGCTTCGACAAAGAATACATATACAATGTTACACGAGGTGGGCGTGATGTGTTCAACTTAACAGAGGCAAAGACATACTACTTTCTGAGCGGCCGAGGCTATTGCTACAAAGGGATGAAAGTTGCTGTTTTTGTTGAGCAAACCCCACTCGTGCTTCACCTCAGCCCTGGTTTCAAATCATATCCACATACCAGCACCAACTTTATCATCATTCTCACTATGCTTGCCACTTGGACAATCATTTCTTGTTAG

Protein Analysis

171

Amino Acids

19.8

Weight (kDa)

7.0

Isoelectric Point (pI)

26.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 45 - 126 3.2e-18 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 351
AciI CCGC 2 cut(s) 74, 351
AcoI YGGCCR 1 cut(s) 352
AdeI CACNNNGTG 1 cut(s) 299
AgsI TTSAA 4 cut(s) 13, 86, 316, 436
AjnI CCWGG 2 cut(s) 89, 427
AoxI GGCC 2 cut(s) 135, 352
ApaI GGGCCC 1 cut(s) 139
Asp700I GAANNNNTTC 1 cut(s) 263
AspS9I GGNCC 2 cut(s) 135, 136
AsuHPI GGTGA 1 cut(s) 410
BaeGI GKGCMC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 139
BauI CACGAG 2 cut(s) 294, 410
BbvCI CCTCAGC 1 cut(s) 422
BcgI CGANNNNNNTGC 2 cut(s) 345, 379
BciT130I CCWGG 2 cut(s) 91, 429
BfaI CTAG 1 cut(s) 44
BisI GCNGC 2 cut(s) 74, 352
BlsI GCNGC 2 cut(s) 75, 353
Bme1390I CCNGG 2 cut(s) 91, 429
BmgT120I GGNCC 2 cut(s) 135, 136
BmiI GGNNCC 3 cut(s) 96, 137, 138
BmrFI CCNGG 2 cut(s) 91, 429
Bpu10I CCTNAGC 1 cut(s) 422
BpuEI CTTGAG 1 cut(s) 254
BsaJI CCNNGG 3 cut(s) 90, 355, 427
Bse1I ACTGG 2 cut(s) 98, 249
BseBI CCWGG 2 cut(s) 91, 429
BseDI CCNNGG 3 cut(s) 90, 355, 427
BseGI GGATG 1 cut(s) 381
BseMII CTCAG 2 cut(s) 338, 436
BseNI ACTGG 2 cut(s) 98, 249
BseSI GKGCMC 1 cut(s) 139
BseX3I CGGCCG 1 cut(s) 352
Bsh1285I CGRYCG 1 cut(s) 355
BshFI GGCC 2 cut(s) 137, 354
BsiEI CGRYCG 1 cut(s) 355
BsnI GGCC 2 cut(s) 137, 354
Bsp120I GGGCCC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 139
BspACI CCGC 2 cut(s) 74, 351
BspANI GGCC 2 cut(s) 137, 354
BspCNI CTCAG 2 cut(s) 339, 435
BspLI GGNNCC 3 cut(s) 96, 137, 138
BsrBI CCGCTC 1 cut(s) 351
BsrI ACTGG 2 cut(s) 98, 249
BssECI CCNNGG 3 cut(s) 90, 355, 427
BssSI CACGAG 2 cut(s) 294, 410
Bst2BI CACGAG 2 cut(s) 294, 410
Bst2UI CCWGG 2 cut(s) 91, 429
BstC8I GCNNGC 3 cut(s) 41, 78, 486
BstDEI CTNAG 2 cut(s) 347, 422
BstF5I GGATG 1 cut(s) 381
BstMCI CGRYCG 1 cut(s) 355
BstMWI GCNNNNNNNGC 1 cut(s) 357
BstNI CCWGG 2 cut(s) 91, 429
BstNSI RCATGY 1 cut(s) 80
BstSCI CCNGG 2 cut(s) 89, 427
BstSLI GKGCMC 1 cut(s) 139
BstZI CGGCCG 1 cut(s) 352
BsuRI GGCC 2 cut(s) 137, 354
BtsCI GGATG 1 cut(s) 381
BtsIMutI CAGTG 2 cut(s) 105, 153
Cac8I GCNNGC 3 cut(s) 41, 78, 486
Cfr13I GGNCC 2 cut(s) 135, 136
CviAII CATG 1 cut(s) 77
CviJI RGCY 6 cut(s) 97, 137, 196, 354, 360, 426
CviKI_1 RGCY 6 cut(s) 97, 137, 196, 354, 360, 426
DdeI CTNAG 2 cut(s) 347, 422
DraIII CACNNNGTG 1 cut(s) 299
EaeI YGGCCR 1 cut(s) 352
EagI CGGCCG 1 cut(s) 352
EclXI CGGCCG 1 cut(s) 352
Eco24I GRGCYC 1 cut(s) 139
Eco52I CGGCCG 1 cut(s) 352
EcoO109I RGGNCCY 1 cut(s) 136
EcoRII CCWGG 2 cut(s) 89, 427
EcoT38I GRGCYC 1 cut(s) 139
FaeI CATG 1 cut(s) 80
FatI CATG 1 cut(s) 76
Fnu4HI GCNGC 2 cut(s) 74, 352
FokI GGATG 1 cut(s) 388
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 2 cut(s) 74, 352
FspBI CTAG 1 cut(s) 44
GluI GCNGC 2 cut(s) 74, 352
HaeIII GGCC 2 cut(s) 137, 354
Hin1II CATG 1 cut(s) 80
HinfI GANTC 1 cut(s) 86
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 2 cut(s) 129, 241
Hpy188I TCNGA 1 cut(s) 348
Hpy8I GTNNAC 2 cut(s) 129, 241
HpyCH4IV ACGT 1 cut(s) 228
HpyF10VI GCNNNNNNNGC 1 cut(s) 357
HpyF3I CTNAG 2 cut(s) 347, 422
HpySE526I ACGT 1 cut(s) 228
Hsp92II CATG 1 cut(s) 80
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 7 cut(s) 76, 103, 111, 262, 414, 441, 466
MaeI CTAG 1 cut(s) 44
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 2 cut(s) 251, 289
MbiI CCGCTC 1 cut(s) 351
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 1 cut(s) 259
MnlI CCTC 7 cut(s) 110, 117, 229, 290, 319, 350, 431
MroXI GAANNNNTTC 1 cut(s) 263
MseI TTAA 2 cut(s) 147, 320
MslI CAYNNNNRTG 1 cut(s) 180
MspR9I CCNGG 2 cut(s) 91, 429
MvaI CCWGG 2 cut(s) 91, 429
MwoI GCNNNNNNNGC 1 cut(s) 357
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 3 cut(s) 96, 137, 138
NmeAIII GCCGAG 1 cut(s) 380
NspI RCATGY 1 cut(s) 80
PaeI GCATGC 1 cut(s) 80
PcsI WCGNNNNNNNCGW 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 263
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 2 cut(s) 75, 353
Psp6I CCWGG 2 cut(s) 89, 427
PspGI CCWGG 2 cut(s) 89, 427
PspN4I GGNNCC 3 cut(s) 96, 137, 138
PspOMI GGGCCC 1 cut(s) 135
PspPI GGNCC 2 cut(s) 135, 136
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 2 cut(s) 147, 320
SatI GCNGC 2 cut(s) 74, 352
Sau96I GGNCC 2 cut(s) 135, 136
ScrFI CCNGG 2 cut(s) 91, 429
SduI GDGCHC 1 cut(s) 139
SetI ASST 5 cut(s) 128, 231, 240, 301, 423
SmiMI CAYNNNNRTG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
SphI GCATGC 1 cut(s) 80
Sse9I AATT 1 cut(s) 259
SsiI CCGC 2 cut(s) 74, 351
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 2 cut(s) 89, 427
TaiI ACGT 1 cut(s) 231
TaqI TCGA 1 cut(s) 267
TasI AATT 1 cut(s) 259
TauI GCSGC 2 cut(s) 76, 354
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 2 cut(s) 147, 320
Tru9I TTAA 2 cut(s) 147, 320
TscAI CASTG 2 cut(s) 105, 160
TspDTI ATGAA 2 cut(s) 95, 392
TspRI CASTG 2 cut(s) 105, 160
XceI RCATGY 1 cut(s) 80
XmnI GAANNNNTTC 1 cut(s) 263
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.