Rh2BG605200

Lamin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0005650
Physical Location & Seq
Forward (+)
82709058 .. 82710824
1767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG605200.1

Sequence Viewer

Length: 510 bp
ATGATGAGGATTAGAATGGTGACGGTGACGGTGATGGTGGTGGTGGTGGTGGGGTTTCTAACGACGAGCGCGGCAGCCAAGCTGCATAAGGTGGGAGACGAACAAGGATGGAATCCGAACGTCAATTACACTCAATGGTCCGCCGATAAGGAATTTTACGTCGGTGAATGGCTCATATTTAATTTCGACAAGAGGTACTACACTGCACTGGAGGTGAACGAGACCAGTTTTGACAGCTGCAATGACAAAGTTTTCATAACCAACATTACCCGTGGCGGGCGAGATGTGTTTGAACTGAAGGAGGCTAGGCCGTACTACTTCCTCTCAAGCGGAGGCTACTGCTACCATGGAATGAAACTTGCTCTTGTTGTCCAAGAACAGCCCCCGCTTGCTCCGGCACAGGCTCCAGCCCTGAATGCTTCTCCCAATTCATTAACCTCCTGCGCTAAAATCTCCATTCTGTCCCTCATTGTGGTTTCCTTTGCTTTGATGGCCAACTTTAGTTGGTAA

Protein Analysis

169

Amino Acids

18.94

Weight (kDa)

6.72

Isoelectric Point (pI)

30.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 37 - 118 2.7e-16 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 71
AciI CCGC 5 cut(s) 71, 141, 276, 330, 386
AcoI YGGCCR 1 cut(s) 492
AcsI RAATTY 1 cut(s) 152
AcuI CTGAAG 1 cut(s) 317
AfaI GTAC 2 cut(s) 197, 314
AfiI CCNNNNNNNGG 2 cut(s) 276, 472
AgsI TTSAA 1 cut(s) 293
AluBI AGCT 2 cut(s) 82, 237
AluI AGCT 2 cut(s) 82, 237
Alw26I GTCTC 2 cut(s) 90, 215
AoxI GGCC 2 cut(s) 308, 492
ApeKI GCWGC 3 cut(s) 74, 82, 237
ApoI RAATTY 1 cut(s) 152
AspLEI GCGC 2 cut(s) 71, 446
AspS9I GGNCC 1 cut(s) 138
AsuHPI GGTGA 5 cut(s) 31, 37, 43, 176, 226
AvaII GGWCC 1 cut(s) 138
BalI TGGCCA 1 cut(s) 494
BbvI GCAGC 3 cut(s) 69, 86, 224
BccI CCATC 3 cut(s) 28, 102, 484
BceAI ACGGC 1 cut(s) 295
BcoDI GTCTC 2 cut(s) 90, 215
BfaI CTAG 1 cut(s) 306
BisI GCNGC 4 cut(s) 72, 75, 83, 238
BlsI GCNGC 4 cut(s) 73, 76, 84, 239
Bme18I GGWCC 1 cut(s) 138
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 1 cut(s) 405
BpmI CTGGAG 2 cut(s) 230, 390
BpuEI CTTGAG 1 cut(s) 310
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 2 cut(s) 271, 346
Bsc4I CCNNNNNNNGG 2 cut(s) 276, 472
Bse1I ACTGG 2 cut(s) 213, 225
Bse3DI GCAATG 1 cut(s) 247
BseDI CCNNGG 2 cut(s) 271, 346
BseGI GGATG 1 cut(s) 113
BseLI CCNNNNNNNGG 2 cut(s) 276, 472
BseMI GCAATG 1 cut(s) 247
BseNI ACTGG 2 cut(s) 213, 225
BseXI GCAGC 3 cut(s) 69, 86, 224
BsgI GTGCAG 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 2 cut(s) 310, 494
BsiSI CCGG 1 cut(s) 395
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 2 cut(s) 276, 472
BsmAI GTCTC 2 cut(s) 90, 215
BsmBI CGTCTC 1 cut(s) 90
BsmFI GGGAC 1 cut(s) 448
BsmI GAATGC 1 cut(s) 421
BsnI GGCC 2 cut(s) 310, 494
Bso31I GGTCTC 1 cut(s) 215
Bsp19I CCATGG 1 cut(s) 346
BspACI CCGC 5 cut(s) 71, 141, 276, 330, 386
BspANI GGCC 2 cut(s) 310, 494
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 405
BspTNI GGTCTC 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 247
BsrI ACTGG 2 cut(s) 213, 225
BssECI CCNNGG 2 cut(s) 271, 346
BssT1I CCWWGG 1 cut(s) 346
Bst4CI ACNGT 2 cut(s) 25, 31
BstC8I GCNNGC 2 cut(s) 278, 390
BstDSI CCRYGG 2 cut(s) 271, 346
BstF5I GGATG 1 cut(s) 113
BstFNI CGCG 1 cut(s) 71
BstHHI GCGC 2 cut(s) 71, 446
BstMAI GTCTC 2 cut(s) 90, 215
BstMWI GCNNNNNNNGC 2 cut(s) 416, 491
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 3 cut(s) 69, 86, 224
BsuRI GGCC 2 cut(s) 310, 494
BtgI CCRYGG 2 cut(s) 271, 346
BtsCI GGATG 1 cut(s) 113
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 2 cut(s) 201, 206
Cac8I GCNNGC 2 cut(s) 278, 390
CfoI GCGC 2 cut(s) 71, 446
Cfr13I GGNCC 1 cut(s) 138
Csp6I GTAC 2 cut(s) 196, 313
CviAII CATG 1 cut(s) 347
CviQI GTAC 2 cut(s) 196, 313
EaeI YGGCCR 1 cut(s) 492
EciI GGCGGA 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 346
Eco31I GGTCTC 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 317
EcoT14I CCWWGG 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 346
Esp3I CGTCTC 1 cut(s) 90
FaeI CATG 1 cut(s) 350
FaiI YATR 4 cut(s) 87, 176, 257, 348
FaqI GGGAC 1 cut(s) 448
FatI CATG 1 cut(s) 346
FauI CCCGC 2 cut(s) 269, 393
Fnu4HI GCNGC 4 cut(s) 72, 75, 83, 238
FokI GGATG 1 cut(s) 120
Fsp4HI GCNGC 4 cut(s) 72, 75, 83, 238
FspBI CTAG 1 cut(s) 306
GlaI GCGC 2 cut(s) 70, 445
GluI GCNGC 4 cut(s) 72, 75, 83, 238
GsuI CTGGAG 2 cut(s) 230, 390
HaeIII GGCC 2 cut(s) 310, 494
HapII CCGG 1 cut(s) 395
HhaI GCGC 2 cut(s) 71, 446
Hin1II CATG 1 cut(s) 350
Hin6I GCGC 2 cut(s) 69, 444
HinP1I GCGC 2 cut(s) 69, 444
HinfI GANTC 1 cut(s) 112
HpaII CCGG 1 cut(s) 395
HphI GGTGA 5 cut(s) 31, 37, 43, 176, 226
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 1 cut(s) 117
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 2 cut(s) 67, 164
HpyAV CCTTC 1 cut(s) 292
HpyCH4III ACNGT 2 cut(s) 25, 31
HpyCH4IV ACGT 2 cut(s) 120, 159
HpyCH4V TGCA 3 cut(s) 85, 206, 240
HpyF10VI GCNNNNNNNGC 2 cut(s) 416, 491
HpySE526I ACGT 2 cut(s) 120, 159
Hsp92II CATG 1 cut(s) 350
HspAI GCGC 2 cut(s) 69, 444
LmnI GCTCC 2 cut(s) 397, 409
LpnPI CCDG 7 cut(s) 194, 238, 386, 408, 420, 425, 454
Lsp1109I GCAGC 3 cut(s) 69, 86, 224
MaeI CTAG 1 cut(s) 306
MaeII ACGT 2 cut(s) 120, 159
MaeIII GTNAC 2 cut(s) 19, 25
MlsI TGGCCA 1 cut(s) 494
MluCI AATT 4 cut(s) 124, 152, 181, 427
MluNI TGGCCA 1 cut(s) 494
MnlI CCTC 7 cut(s) 186, 205, 295, 326, 332, 448, 476
Mox20I TGGCCA 1 cut(s) 494
MscI TGGCCA 1 cut(s) 494
MseI TTAA 2 cut(s) 180, 434
Msp20I TGGCCA 1 cut(s) 494
MspA1I CMGCKG 1 cut(s) 237
MspI CCGG 1 cut(s) 395
Mva1269I GAATGC 1 cut(s) 421
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 416, 491
NcoI CCATGG 1 cut(s) 346
NlaIII CATG 1 cut(s) 350
NlaIV GGNNCC 1 cut(s) 405
NmuCI GTSAC 2 cut(s) 19, 25
PctI GAATGC 1 cut(s) 421
PfeI GAWTC 1 cut(s) 112
PkrI GCNGC 4 cut(s) 73, 76, 84, 239
PspN4I GGNNCC 1 cut(s) 405
PspPI GGNCC 1 cut(s) 138
PsrI GAACNNNNNNTAC 2 cut(s) 110, 142
PvuII CAGCTG 1 cut(s) 237
RsaI GTAC 2 cut(s) 197, 314
RsaNI GTAC 2 cut(s) 196, 313
SaqAI TTAA 2 cut(s) 180, 434
SatI GCNGC 4 cut(s) 72, 75, 83, 238
Sau96I GGNCC 1 cut(s) 138
SetI ASST 8 cut(s) 84, 93, 123, 162, 197, 216, 239, 440
SinI GGWCC 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
Sse9I AATT 4 cut(s) 124, 152, 181, 427
SsiI CCGC 5 cut(s) 71, 141, 276, 330, 386
SspMI CTAG 1 cut(s) 306
StyI CCWWGG 1 cut(s) 346
TaaI ACNGT 2 cut(s) 25, 31
TaiI ACGT 2 cut(s) 123, 162
TaqI TCGA 1 cut(s) 186
TasI AATT 4 cut(s) 124, 152, 181, 427
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 2 cut(s) 180, 434
Tru9I TTAA 2 cut(s) 180, 434
TscAI CASTG 2 cut(s) 208, 213
TseFI GTSAC 2 cut(s) 19, 25
TseI GCWGC 3 cut(s) 74, 82, 237
Tsp45I GTSAC 2 cut(s) 19, 25
TspDTI ATGAA 3 cut(s) 244, 368, 420
TspRI CASTG 2 cut(s) 208, 213
VpaK11BI GGWCC 1 cut(s) 138
XapI RAATTY 1 cut(s) 152
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.