Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005650

Physical Location & Seq

Genomic Coordinates Forward (+)

77256941 .. 77258287

Gene Structure 1347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021683

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGATGAGGATTAGAATGGTGACGGTGATGGTGGTGGTGGTGGTGGTGGTGGGGTTTCTGACGACGAGCGCGGCGGCCAAGCTGCATAAGGTGGGAGACGAACAAGGATGGAATCCGAACGTCAATTACACTCAATGGTCCGCCGATAAGGAATTTTACGTCGATGAATGGCTCATATTTAATTTCGACAAGAGGTACTACACTGCGCTGGAGGTGAACAAGACCAGTTTTGACAGCTGCAATGACAAAGTTTTCATAACCAACATCACCCGTGGCGGCCGAGATGTGTTTGAACTGAAAGAGGCTAGGCCATACTACTTCCTCTCAAGCGGAGGCTACTGCTTCCATGGAATGAAACTTGCTCTTGTTGTCCAAGACCAGCCCCCGCTTGCTCCGGCACAGGCTCCAGCCCTGAATGCTTCTCCCAATTCATTAACCTCCTGCGCTCAAATCTCCATTCTGTCCCTCATTGTGGTTTCCTTTGATTTGGTGACAAACTTTAGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

170

Amino Acids

18.94

Weight (kDa)

6.08

Isoelectric Point (pI)

29.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	37 - 118	3e-14	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27035
fragaria_vesca	FvH4_6g27830 FvH4_6g47772
malus_domestica	MD11G1182000.v1.1 MD15G1314400.v1.1 MD17G1054300.v1.1
prunus_persica	Prupe.3G261800_v2.0.a1 Prupe.6G154600_v2.0.a1 Prupe.6G154700_v2.0.a1
pyrus_communis	pycom17g05200
rosa_chinensis	RchiOBHm_Chr2g0166951 RchiOBHm_Chr5g0049891
rosa_laevigata	RLG00000021683 RLG00000034660
rosa_multiflora	Rmu_sc0002735.1_g000023 Rmu_sc0008387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00031480 Rroxscaffold_2G00083920
rosa_rugosa	Rorug02G0526800 Rorug05G0253600
rosa_samantha	Rh2AG593700 Rh2BG605200 Rh2CG576100 Rh2DG616700 Rh5BG339000 Rh5DG351400
rosa_wichuraiana	Rw2G049430 Rw5G031020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	71
AciI	CCGC	6 cut(s)	71, 74, 141, 276, 330, 386
AcoI	YGGCCR	2 cut(s)	75, 277
AcsI	RAATTY	1 cut(s)	152
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	472
AgsI	TTSAA	1 cut(s)	293
AluBI	AGCT	2 cut(s)	82, 237
AluI	AGCT	2 cut(s)	82, 237
Alw26I	GTCTC	1 cut(s)	90
AoxI	GGCC	3 cut(s)	75, 277, 308
ApeKI	GCWGC	2 cut(s)	82, 237
ApoI	RAATTY	1 cut(s)	152
AspLEI	GCGC	3 cut(s)	71, 208, 446
AspS9I	GGNCC	1 cut(s)	138
AsuHPI	GGTGA	5 cut(s)	31, 37, 226, 259, 502
AvaII	GGWCC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	69, 224
BccI	CCATC	2 cut(s)	22, 102
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	1 cut(s)	306
BisI	GCNGC	5 cut(s)	72, 75, 83, 238, 277
BlsI	GCNGC	5 cut(s)	73, 76, 84, 239, 278
Bme18I	GGWCC	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	1 cut(s)	405
BpmI	CTGGAG	2 cut(s)	230, 390
BpuEI	CTTGAG	1 cut(s)	310
BsaJI	CCNNGG	2 cut(s)	271, 346
Bsc4I	CCNNNNNNNGG	1 cut(s)	472
Bse1I	ACTGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	247
BseDI	CCNNGG	2 cut(s)	271, 346
BseGI	GGATG	1 cut(s)	113
BseLI	CCNNNNNNNGG	1 cut(s)	472
BseMI	GCAATG	1 cut(s)	247
BseNI	ACTGG	1 cut(s)	225
BseX3I	CGGCCG	1 cut(s)	277
BseXI	GCAGC	2 cut(s)	69, 224
Bsh1236I	CGCG	1 cut(s)	71
Bsh1285I	CGRYCG	1 cut(s)	280
BshFI	GGCC	3 cut(s)	77, 279, 310
BsiEI	CGRYCG	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	395
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	1 cut(s)	472
BsmAI	GTCTC	1 cut(s)	90
BsmBI	CGTCTC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	448
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	3 cut(s)	77, 279, 310
Bsp19I	CCATGG	1 cut(s)	346
BspACI	CCGC	6 cut(s)	71, 74, 141, 276, 330, 386
BspANI	GGCC	3 cut(s)	77, 279, 310
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	1 cut(s)	405
BsrDI	GCAATG	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	225
BssECI	CCNNGG	2 cut(s)	271, 346
BssT1I	CCWWGG	1 cut(s)	346
Bst4CI	ACNGT	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	390
BstDSI	CCRYGG	2 cut(s)	271, 346
BstF5I	GGATG	1 cut(s)	113
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	3 cut(s)	71, 208, 446
BstMAI	GTCTC	1 cut(s)	90
BstMCI	CGRYCG	1 cut(s)	280
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	2 cut(s)	69, 224
BstZI	CGGCCG	1 cut(s)	277
BsuRI	GGCC	3 cut(s)	77, 279, 310
BtgI	CCRYGG	2 cut(s)	271, 346
BtsCI	GGATG	1 cut(s)	113
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	390
CfoI	GCGC	3 cut(s)	71, 208, 446
Cfr13I	GGNCC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	1 cut(s)	347
CviQI	GTAC	1 cut(s)	196
EaeI	YGGCCR	2 cut(s)	75, 277
EagI	CGGCCG	1 cut(s)	277
EciI	GGCGGA	1 cut(s)	130
EclXI	CGGCCG	1 cut(s)	277
Eco130I	CCWWGG	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	138
Eco52I	CGGCCG	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	346
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	1 cut(s)	350
FaiI	YATR	5 cut(s)	87, 176, 257, 313, 348
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	1 cut(s)	346
FauI	CCCGC	1 cut(s)	393
Fnu4HI	GCNGC	5 cut(s)	72, 75, 83, 238, 277
FokI	GGATG	1 cut(s)	120
Fsp4HI	GCNGC	5 cut(s)	72, 75, 83, 238, 277
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	3 cut(s)	70, 207, 445
GluI	GCNGC	5 cut(s)	72, 75, 83, 238, 277
GsuI	CTGGAG	2 cut(s)	230, 390
HaeIII	GGCC	3 cut(s)	77, 279, 310
HapII	CCGG	1 cut(s)	395
HhaI	GCGC	3 cut(s)	71, 208, 446
Hin1II	CATG	1 cut(s)	350
Hin6I	GCGC	3 cut(s)	69, 206, 444
HinP1I	GCGC	3 cut(s)	69, 206, 444
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	5 cut(s)	31, 37, 226, 259, 502
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	2 cut(s)	60, 117
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	2 cut(s)	67, 164
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	2 cut(s)	120, 159
HpyCH4V	TGCA	2 cut(s)	85, 240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpySE526I	ACGT	2 cut(s)	120, 159
Hsp92II	CATG	1 cut(s)	350
HspAI	GCGC	3 cut(s)	69, 206, 444
LmnI	GCTCC	2 cut(s)	397, 409
LpnPI	CCDG	8 cut(s)	194, 238, 386, 392, 408, 420, 425, 454
Lsp1109I	GCAGC	2 cut(s)	69, 224
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	2 cut(s)	120, 159
MaeIII	GTNAC	2 cut(s)	19, 490
MluCI	AATT	4 cut(s)	124, 152, 181, 427
MnlI	CCTC	7 cut(s)	186, 205, 295, 326, 332, 448, 476
MseI	TTAA	2 cut(s)	180, 434
MspA1I	CMGCKG	1 cut(s)	237
MspI	CCGG	1 cut(s)	395
Mva1269I	GAATGC	1 cut(s)	421
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	416
NcoI	CCATGG	1 cut(s)	346
NlaIII	CATG	1 cut(s)	350
NlaIV	GGNNCC	1 cut(s)	405
NmeAIII	GCCGAG	1 cut(s)	305
NmuCI	GTSAC	2 cut(s)	19, 490
PctI	GAATGC	1 cut(s)	421
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	5 cut(s)	73, 76, 84, 239, 278
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	1 cut(s)	138
PsrI	GAACNNNNNNTAC	2 cut(s)	110, 142
PvuII	CAGCTG	1 cut(s)	237
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SaqAI	TTAA	2 cut(s)	180, 434
SatI	GCNGC	5 cut(s)	72, 75, 83, 238, 277
Sau96I	GGNCC	1 cut(s)	138
SetI	ASST	8 cut(s)	84, 93, 123, 162, 197, 216, 239, 440
SinI	GGWCC	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse9I	AATT	4 cut(s)	124, 152, 181, 427
SsiI	CCGC	6 cut(s)	71, 74, 141, 276, 330, 386
SspMI	CTAG	1 cut(s)	306
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	2 cut(s)	123, 162
TaqI	TCGA	2 cut(s)	162, 186
TasI	AATT	4 cut(s)	124, 152, 181, 427
TauI	GCSGC	3 cut(s)	74, 77, 279
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	2 cut(s)	180, 434
Tru9I	TTAA	2 cut(s)	180, 434
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	2 cut(s)	19, 490
TseI	GCWGC	2 cut(s)	82, 237
Tsp45I	GTSAC	2 cut(s)	19, 490
TspDTI	ATGAA	4 cut(s)	180, 244, 368, 420
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	138
XapI	RAATTY	1 cut(s)	152
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.