Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005650

Physical Location & Seq

Genomic Coordinates Forward (+)

31805283 .. 31807140

Gene Structure 1858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1314400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAGCGTTTCGGTTTTGGTTTTGGCTTGACTCGTCTGAGATCGAGGGTAGCAGTGCCGGTGTGGCTGGCAATAGTAGCGGTGATGATAACAATGAGAGCAGCGGCCAAGGTCAGCAGACATGACGTCGGAGGAAGCAAGATTAATTGGAAACCAGGCGTTAACCTCTCAGACTGGTCTTCTCATGAAACATTTTACGTTGGTGATGGGCTCTATTTTGGATACGAAAAGCACAGATTTAATGTACTGGAAGTGAACGAGACAAATTATGAGAACTGCATCGACACCGGCTTCATTAAAAACATAACAGGTGGTGCGGGACGCGATGTCTTCATACTCACACAAGCAAAAACATATTACTTCCTCAGCAGTGGCGGGTATTGCTTTGGAGGCTTGAAGGTTTCCGTCAACGTCCTCCAACAGCTTCCGCCCACCCCGCCTCCTACTTCACCTTTAAGTGGTGCTAGTAGTTCTGCTTCTCCGCTTAACCCCATCGGGATCGTTGTCTACTTCATCTTGGCATATGAAATCATTAGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

181

Amino Acids

19.75

Weight (kDa)

9.12

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	50 - 131	1.6e-15	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27035
fragaria_vesca	FvH4_6g27830 FvH4_6g47772
malus_domestica	MD11G1182000.v1.1 MD15G1314400.v1.1 MD17G1054300.v1.1
prunus_persica	Prupe.3G261800_v2.0.a1 Prupe.6G154600_v2.0.a1 Prupe.6G154700_v2.0.a1
pyrus_communis	pycom17g05200
rosa_chinensis	RchiOBHm_Chr2g0166951 RchiOBHm_Chr5g0049891
rosa_laevigata	RLG00000021683 RLG00000034660
rosa_multiflora	Rmu_sc0002735.1_g000023 Rmu_sc0008387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00031480 Rroxscaffold_2G00083920
rosa_rugosa	Rorug02G0526800 Rorug05G0253600
rosa_samantha	Rh2AG593700 Rh2BG605200 Rh2CG576100 Rh2DG616700 Rh5BG339000 Rh5DG351400
rosa_wichuraiana	Rw2G049430 Rw5G031020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
AccI	GTMKAC	1 cut(s)	507
AccII	CGCG	1 cut(s)	324
AciI	CCGC	7 cut(s)	80, 104, 317, 375, 428, 437, 482
AclWI	GGATC	1 cut(s)	506
AcoI	YGGCCR	1 cut(s)	105
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	1 cut(s)	246
AfiI	CCNNNNNNNGG	1 cut(s)	458
AgsI	TTSAA	1 cut(s)	397
AhdI	GACNNNNNGTC	2 cut(s)	125, 326
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	1 cut(s)	424
AluI	AGCT	1 cut(s)	424
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	1 cut(s)	506
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	1 cut(s)	101
AseI	ATTAAT	1 cut(s)	144
AsuHPI	GGTGA	3 cut(s)	94, 215, 441
BanII	GRGCYC	1 cut(s)	213
BarI	GAAGNNNNNNTAC	2 cut(s)	460, 492
BbsI	GAAGAC	2 cut(s)	171, 322
BbvCI	CCTCAGC	1 cut(s)	365
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	2 cut(s)	200, 500
BciT130I	CCWGG	1 cut(s)	156
BciVI	GTATCC	1 cut(s)	215
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	1 cut(s)	465
BfuI	GTATCC	1 cut(s)	215
BglI	GCCNNNNNGGC	1 cut(s)	64
BisI	GCNGC	2 cut(s)	102, 105
BlsI	GCNGC	2 cut(s)	103, 106
Bme1390I	CCNGG	1 cut(s)	156
BmeRI	GACNNNNNGTC	2 cut(s)	125, 326
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	1 cut(s)	288
BpiI	GAAGAC	2 cut(s)	171, 322
Bpu10I	CCTNAGC	1 cut(s)	365
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	108
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
Bse118I	RCCGGY	2 cut(s)	58, 287
Bse1I	ACTGG	2 cut(s)	179, 252
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseMII	CTCAG	3 cut(s)	29, 183, 379
BseNI	ACTGG	2 cut(s)	179, 252
BseXI	GCAGC	1 cut(s)	113
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	1 cut(s)	107
BsiSI	CCGG	2 cut(s)	59, 288
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	1 cut(s)	458
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	333
BsnI	GGCC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	2 cut(s)	41, 498
BspACI	CCGC	7 cut(s)	80, 104, 317, 375, 428, 437, 482
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	3 cut(s)	30, 182, 378
BspFNI	CGCG	1 cut(s)	324
BspHI	TCATGA	1 cut(s)	184
BspPI	GGATC	1 cut(s)	506
BsrFI	RCCGGY	2 cut(s)	58, 287
BsrI	ACTGG	2 cut(s)	179, 252
BssAI	RCCGGY	2 cut(s)	58, 287
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	2 cut(s)	41, 498
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	156
BstACI	GRCGYC	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	3 cut(s)	38, 169, 365
BstFNI	CGCG	1 cut(s)	324
BstKTI	GATC	2 cut(s)	44, 501
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	2 cut(s)	41, 498
BstMWI	GCNNNNNNNGC	5 cut(s)	64, 77, 381, 390, 436
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	1 cut(s)	113
BstV2I	GAAGAC	2 cut(s)	171, 322
BsuI	GTATCC	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	107
BtgZI	GCGATG	1 cut(s)	339
BtsI	GCAGTG	2 cut(s)	60, 376
BtsIMutI	CAGTG	2 cut(s)	60, 376
Cac8I	GCNNGC	1 cut(s)	69
CciI	TCATGA	1 cut(s)	184
Cfr10I	RCCGGY	2 cut(s)	58, 287
CseI	GACGC	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	2 cut(s)	122, 185
CviJI	RGCY	7 cut(s)	27, 67, 107, 211, 291, 393, 424
CviKI_1	RGCY	7 cut(s)	27, 67, 107, 211, 291, 393, 424
CviQI	GTAC	1 cut(s)	245
DdeI	CTNAG	3 cut(s)	38, 169, 365
DpnI	GATC	2 cut(s)	43, 500
DpnII	GATC	2 cut(s)	41, 498
DriI	GACNNNNNGTC	2 cut(s)	125, 326
EaeI	YGGCCR	1 cut(s)	105
Eam1105I	GACNNNNNGTC	2 cut(s)	125, 326
EciI	GGCGGA	1 cut(s)	417
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	2 cut(s)	125, 188
FaiI	YATR	8 cut(s)	123, 186, 270, 305, 335, 355, 523, 525
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	2 cut(s)	121, 184
FauI	CCCGC	3 cut(s)	310, 368, 444
FauNDI	CATATG	1 cut(s)	523
FblI	GTMKAC	1 cut(s)	507
Fnu4HI	GCNGC	2 cut(s)	102, 105
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	2 cut(s)	102, 105
FspBI	CTAG	1 cut(s)	465
GluI	GCNGC	2 cut(s)	102, 105
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	2 cut(s)	59, 288
HgaI	GACGC	1 cut(s)	330
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	125, 188
HincII	GTYRAC	2 cut(s)	163, 409
HindII	GTYRAC	2 cut(s)	163, 409
HinfI	GANTC	1 cut(s)	31
HpaI	GTTAAC	1 cut(s)	163
HpaII	CCGG	2 cut(s)	59, 288
HphI	GGTGA	3 cut(s)	94, 215, 441
Hpy166II	GTNNAC	4 cut(s)	163, 256, 409, 508
Hpy188I	TCNGA	3 cut(s)	39, 131, 172
Hpy188III	TCNNGA	2 cut(s)	185, 496
Hpy8I	GTNNAC	4 cut(s)	163, 256, 409, 508
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	1 cut(s)	391
HpyCH4IV	ACGT	3 cut(s)	126, 198, 411
HpyCH4V	TGCA	1 cut(s)	279
HpyF10VI	GCNNNNNNNGC	5 cut(s)	64, 77, 381, 390, 436
HpyF3I	CTNAG	3 cut(s)	38, 169, 365
HpySE526I	ACGT	3 cut(s)	126, 198, 411
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	125, 188
KspAI	GTTAAC	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	41, 498
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	8 cut(s)	53, 72, 141, 160, 168, 233, 294, 301
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	1 cut(s)	288
MaeI	CTAG	1 cut(s)	465
MaeII	ACGT	3 cut(s)	126, 198, 411
MalI	GATC	2 cut(s)	43, 500
MboI	GATC	2 cut(s)	41, 498
MboII	GAAGA	2 cut(s)	171, 322
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	2 cut(s)	145, 265
MlyI	GAGTC	1 cut(s)	25
MmeI	TCCRAC	2 cut(s)	109, 442
MnlI	CCTC	7 cut(s)	39, 125, 176, 374, 383, 425, 450
MseI	TTAA	7 cut(s)	144, 162, 240, 297, 455, 486, 541
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	2 cut(s)	59, 288
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	5 cut(s)	64, 77, 381, 390, 436
NdeI	CATATG	1 cut(s)	523
NdeII	GATC	2 cut(s)	41, 498
NlaIII	CATG	2 cut(s)	125, 188
PagI	TCATGA	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	103, 106
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PshBI	ATTAAT	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
SaqAI	TTAA	7 cut(s)	144, 162, 240, 297, 455, 486, 541
SatI	GCNGC	2 cut(s)	102, 105
Sau3AI	GATC	2 cut(s)	41, 498
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	9 cut(s)	114, 129, 168, 201, 313, 402, 414, 426, 454
SfaNI	GCATC	1 cut(s)	288
Sse9I	AATT	2 cut(s)	145, 265
SsiI	CCGC	7 cut(s)	80, 104, 317, 375, 428, 437, 482
SspMI	CTAG	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	108
TaiI	ACGT	3 cut(s)	129, 201, 414
TaqI	TCGA	2 cut(s)	44, 282
TasI	AATT	2 cut(s)	145, 265
TatI	WGTACW	1 cut(s)	244
TauI	GCSGC	1 cut(s)	107
Tru1I	TTAA	7 cut(s)	144, 162, 240, 297, 455, 486, 541
Tru9I	TTAA	7 cut(s)	144, 162, 240, 297, 455, 486, 541
TscAI	CASTG	2 cut(s)	60, 376
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	5 cut(s)	201, 283, 322, 502, 540
TspGWI	ACGGA	1 cut(s)	394
TspRI	CASTG	2 cut(s)	60, 376
VspI	ATTAAT	1 cut(s)	144
XmiI	GTMKAC	1 cut(s)	507
XspI	CTAG	1 cut(s)	465
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.