Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005650

Physical Location & Seq

Genomic Coordinates Forward (+)

81661897 .. 81663263

Gene Structure 1367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53477

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGATGAGGATTAGAATGGTGACGGTGACGGTGATGGTGGTGGTGGTGGTGGGGTTTCTAACGACGAGCGCGGCAGCCAAGCTGCATAAGGTGGGAGACGAACAAGGATGGAATCCGAACGTCAATTACACTCAATGGTCCGCCGATAAGGAATTTTACGTCGGTGAATGGCTCATATTTAATTTCGACAAGAGGTACTACACTGCACTGGAGGTGAACGAGACCAGTTTTGACAGCTGCAATGACAAAGTTTTCATAACCAACATTACCCGTGGCGGGCGAGATGTGTTTGAACTGAAGGAGGCTAGGCCGTACTACTTCCTCTCAAGCGGAGGCTACTGCTACCATGGAATGAAACTTGCTCTTGTTGTCCAAGAACAGCCCCCGCTTGCTCCGGCACAGGCTCCAGCCCTGAATGCTTCTCCCAATTCATTAACCTCCTGCGCTAAAATCTCCATTCTGTCCCTCATTGTGGTTTCCTTTGCTTTGATGGCCAACTTTAGTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

169

Amino Acids

18.94

Weight (kDa)

6.72

Isoelectric Point (pI)

30.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	37 - 118	2.7e-16	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27035
fragaria_vesca	FvH4_6g27830 FvH4_6g47772
malus_domestica	MD11G1182000.v1.1 MD15G1314400.v1.1 MD17G1054300.v1.1
prunus_persica	Prupe.3G261800_v2.0.a1 Prupe.6G154600_v2.0.a1 Prupe.6G154700_v2.0.a1
pyrus_communis	pycom17g05200
rosa_chinensis	RchiOBHm_Chr2g0166951 RchiOBHm_Chr5g0049891
rosa_laevigata	RLG00000021683 RLG00000034660
rosa_multiflora	Rmu_sc0002735.1_g000023 Rmu_sc0008387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00031480 Rroxscaffold_2G00083920
rosa_rugosa	Rorug02G0526800 Rorug05G0253600
rosa_samantha	Rh2AG593700 Rh2BG605200 Rh2CG576100 Rh2DG616700 Rh5BG339000 Rh5DG351400
rosa_wichuraiana	Rw2G049430 Rw5G031020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	71
AciI	CCGC	5 cut(s)	71, 141, 276, 330, 386
AcoI	YGGCCR	1 cut(s)	492
AcsI	RAATTY	1 cut(s)	152
AcuI	CTGAAG	1 cut(s)	317
AfaI	GTAC	2 cut(s)	197, 314
AfiI	CCNNNNNNNGG	2 cut(s)	276, 472
AgsI	TTSAA	1 cut(s)	293
AluBI	AGCT	2 cut(s)	82, 237
AluI	AGCT	2 cut(s)	82, 237
Alw26I	GTCTC	2 cut(s)	90, 215
AoxI	GGCC	2 cut(s)	308, 492
ApeKI	GCWGC	3 cut(s)	74, 82, 237
ApoI	RAATTY	1 cut(s)	152
AspLEI	GCGC	2 cut(s)	71, 446
AspS9I	GGNCC	1 cut(s)	138
AsuHPI	GGTGA	5 cut(s)	31, 37, 43, 176, 226
AvaII	GGWCC	1 cut(s)	138
BalI	TGGCCA	1 cut(s)	494
BbvI	GCAGC	3 cut(s)	69, 86, 224
BccI	CCATC	3 cut(s)	28, 102, 484
BceAI	ACGGC	1 cut(s)	295
BcoDI	GTCTC	2 cut(s)	90, 215
BfaI	CTAG	1 cut(s)	306
BisI	GCNGC	4 cut(s)	72, 75, 83, 238
BlsI	GCNGC	4 cut(s)	73, 76, 84, 239
Bme18I	GGWCC	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	1 cut(s)	405
BpmI	CTGGAG	2 cut(s)	230, 390
BpuEI	CTTGAG	1 cut(s)	310
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	271, 346
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 472
Bse1I	ACTGG	2 cut(s)	213, 225
Bse3DI	GCAATG	1 cut(s)	247
BseDI	CCNNGG	2 cut(s)	271, 346
BseGI	GGATG	1 cut(s)	113
BseLI	CCNNNNNNNGG	2 cut(s)	276, 472
BseMI	GCAATG	1 cut(s)	247
BseNI	ACTGG	2 cut(s)	213, 225
BseXI	GCAGC	3 cut(s)	69, 86, 224
BsgI	GTGCAG	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	2 cut(s)	310, 494
BsiSI	CCGG	1 cut(s)	395
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	2 cut(s)	276, 472
BsmAI	GTCTC	2 cut(s)	90, 215
BsmBI	CGTCTC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	448
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	2 cut(s)	310, 494
Bso31I	GGTCTC	1 cut(s)	215
Bsp19I	CCATGG	1 cut(s)	346
BspACI	CCGC	5 cut(s)	71, 141, 276, 330, 386
BspANI	GGCC	2 cut(s)	310, 494
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	1 cut(s)	405
BspTNI	GGTCTC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	247
BsrI	ACTGG	2 cut(s)	213, 225
BssECI	CCNNGG	2 cut(s)	271, 346
BssT1I	CCWWGG	1 cut(s)	346
Bst4CI	ACNGT	2 cut(s)	25, 31
BstC8I	GCNNGC	2 cut(s)	278, 390
BstDSI	CCRYGG	2 cut(s)	271, 346
BstF5I	GGATG	1 cut(s)	113
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	2 cut(s)	71, 446
BstMAI	GTCTC	2 cut(s)	90, 215
BstMWI	GCNNNNNNNGC	2 cut(s)	416, 491
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	3 cut(s)	69, 86, 224
BsuRI	GGCC	2 cut(s)	310, 494
BtgI	CCRYGG	2 cut(s)	271, 346
BtsCI	GGATG	1 cut(s)	113
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	2 cut(s)	201, 206
Cac8I	GCNNGC	2 cut(s)	278, 390
CfoI	GCGC	2 cut(s)	71, 446
Cfr13I	GGNCC	1 cut(s)	138
Csp6I	GTAC	2 cut(s)	196, 313
CviAII	CATG	1 cut(s)	347
CviQI	GTAC	2 cut(s)	196, 313
EaeI	YGGCCR	1 cut(s)	492
EciI	GGCGGA	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	346
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	138
Eco57I	CTGAAG	1 cut(s)	317
EcoT14I	CCWWGG	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	346
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	1 cut(s)	350
FaiI	YATR	4 cut(s)	87, 176, 257, 348
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	1 cut(s)	346
FauI	CCCGC	2 cut(s)	269, 393
Fnu4HI	GCNGC	4 cut(s)	72, 75, 83, 238
FokI	GGATG	1 cut(s)	120
Fsp4HI	GCNGC	4 cut(s)	72, 75, 83, 238
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	2 cut(s)	70, 445
GluI	GCNGC	4 cut(s)	72, 75, 83, 238
GsuI	CTGGAG	2 cut(s)	230, 390
HaeIII	GGCC	2 cut(s)	310, 494
HapII	CCGG	1 cut(s)	395
HhaI	GCGC	2 cut(s)	71, 446
Hin1II	CATG	1 cut(s)	350
Hin6I	GCGC	2 cut(s)	69, 444
HinP1I	GCGC	2 cut(s)	69, 444
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	5 cut(s)	31, 37, 43, 176, 226
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	1 cut(s)	117
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	2 cut(s)	67, 164
HpyAV	CCTTC	1 cut(s)	292
HpyCH4III	ACNGT	2 cut(s)	25, 31
HpyCH4IV	ACGT	2 cut(s)	120, 159
HpyCH4V	TGCA	3 cut(s)	85, 206, 240
HpyF10VI	GCNNNNNNNGC	2 cut(s)	416, 491
HpySE526I	ACGT	2 cut(s)	120, 159
Hsp92II	CATG	1 cut(s)	350
HspAI	GCGC	2 cut(s)	69, 444
LmnI	GCTCC	2 cut(s)	397, 409
LpnPI	CCDG	7 cut(s)	194, 238, 386, 408, 420, 425, 454
Lsp1109I	GCAGC	3 cut(s)	69, 86, 224
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	2 cut(s)	120, 159
MaeIII	GTNAC	2 cut(s)	19, 25
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	4 cut(s)	124, 152, 181, 427
MluNI	TGGCCA	1 cut(s)	494
MnlI	CCTC	7 cut(s)	186, 205, 295, 326, 332, 448, 476
Mox20I	TGGCCA	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	2 cut(s)	180, 434
Msp20I	TGGCCA	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	237
MspI	CCGG	1 cut(s)	395
Mva1269I	GAATGC	1 cut(s)	421
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	2 cut(s)	416, 491
NcoI	CCATGG	1 cut(s)	346
NlaIII	CATG	1 cut(s)	350
NlaIV	GGNNCC	1 cut(s)	405
NmuCI	GTSAC	2 cut(s)	19, 25
PctI	GAATGC	1 cut(s)	421
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	4 cut(s)	73, 76, 84, 239
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	1 cut(s)	138
PsrI	GAACNNNNNNTAC	2 cut(s)	110, 142
PvuII	CAGCTG	1 cut(s)	237
RsaI	GTAC	2 cut(s)	197, 314
RsaNI	GTAC	2 cut(s)	196, 313
SaqAI	TTAA	2 cut(s)	180, 434
SatI	GCNGC	4 cut(s)	72, 75, 83, 238
Sau96I	GGNCC	1 cut(s)	138
SetI	ASST	8 cut(s)	84, 93, 123, 162, 197, 216, 239, 440
SinI	GGWCC	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse9I	AATT	4 cut(s)	124, 152, 181, 427
SsiI	CCGC	5 cut(s)	71, 141, 276, 330, 386
SspMI	CTAG	1 cut(s)	306
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	2 cut(s)	25, 31
TaiI	ACGT	2 cut(s)	123, 162
TaqI	TCGA	1 cut(s)	186
TasI	AATT	4 cut(s)	124, 152, 181, 427
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	2 cut(s)	180, 434
Tru9I	TTAA	2 cut(s)	180, 434
TscAI	CASTG	2 cut(s)	208, 213
TseFI	GTSAC	2 cut(s)	19, 25
TseI	GCWGC	3 cut(s)	74, 82, 237
Tsp45I	GTSAC	2 cut(s)	19, 25
TspDTI	ATGAA	3 cut(s)	244, 368, 420
TspRI	CASTG	2 cut(s)	208, 213
VpaK11BI	GGWCC	1 cut(s)	138
XapI	RAATTY	1 cut(s)	152
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.