Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008387.1

Orthogroup ID

OG0005650

Physical Location & Seq

Genomic Coordinates Reverse (-)

84800 .. 85487

Gene Structure 688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008387.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgcatgtgctgccacttctcaagtgccatggcctcaatggagcaaagccaacaggtaatccacagatagatagagagattgagctatctagggttgcgaatggaggggagccagtccttcatagggttggagggggaaggttcacttgggcccccgatattaacttcacagattggtcaagtaaagagcatttctatgtaggcgattggctgtattttgggtttgacaaacatatctacaatgtgcttgaggtaaacaggaccagttacgagaattgcttcgacaaagaatacatatacaatgttacacgaggcgggcgtgatgtgttcaacttgacagaggcaaagacatacttctttctgagcggccgaggctattgcaacaaagggatgaaagttgctgtttttgttgagcaaaccccacccgtacttcacctcagccctggtttcaaattacatccatattccagcaccagccttatcatcattctcactatgcttgccacttggacaatcatttctcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

175

Amino Acids

19.95

Weight (kDa)

7.77

Isoelectric Point (pI)

27.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27035
fragaria_vesca	FvH4_6g27830 FvH4_6g47772
malus_domestica	MD11G1182000.v1.1 MD15G1314400.v1.1 MD17G1054300.v1.1
prunus_persica	Prupe.3G261800_v2.0.a1 Prupe.6G154600_v2.0.a1 Prupe.6G154700_v2.0.a1
pyrus_communis	pycom17g05200
rosa_chinensis	RchiOBHm_Chr2g0166951 RchiOBHm_Chr5g0049891
rosa_laevigata	RLG00000021683 RLG00000034660
rosa_multiflora	Rmu_sc0002735.1_g000023 Rmu_sc0008387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00031480 Rroxscaffold_2G00083920
rosa_rugosa	Rorug02G0526800 Rorug05G0253600
rosa_samantha	Rh2AG593700 Rh2BG605200 Rh2CG576100 Rh2DG616700 Rh5BG339000 Rh5DG351400
rosa_wichuraiana	Rw2G049430 Rw5G031020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	366
AciI	CCGC	2 cut(s)	315, 366
AcoI	YGGCCR	1 cut(s)	367
AfaI	GTAC	1 cut(s)	429
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	2 cut(s)	331, 451
AjnI	CCWGG	1 cut(s)	442
AjuI	GAANNNNNNNTTGG	2 cut(s)	130, 162
AluBI	AGCT	1 cut(s)	85
AluI	AGCT	1 cut(s)	85
AoxI	GGCC	3 cut(s)	31, 150, 367
ApaI	GGGCCC	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	10
Asp700I	GAANNNNTTC	1 cut(s)	278
AspS9I	GGNCC	3 cut(s)	150, 151, 261
AsuHPI	GGTGA	1 cut(s)	425
AvaII	GGWCC	1 cut(s)	261
BaeGI	GKGCMC	1 cut(s)	154
BanII	GRGCYC	1 cut(s)	154
BauI	CACGAG	1 cut(s)	309
BbvCI	CCTCAGC	1 cut(s)	437
BcgI	CGANNNNNNTGC	2 cut(s)	360, 394
BciT130I	CCWGG	1 cut(s)	444
BfaI	CTAG	2 cut(s)	90, 526
BisI	GCNGC	2 cut(s)	11, 367
BlsI	GCNGC	2 cut(s)	12, 368
Bme1390I	CCNGG	1 cut(s)	444
Bme18I	GGWCC	1 cut(s)	261
BmgT120I	GGNCC	3 cut(s)	150, 151, 261
BmiI	GGNNCC	3 cut(s)	111, 152, 153
BmrFI	CCNGG	1 cut(s)	444
Bpu10I	CCTNAGC	1 cut(s)	437
BpuEI	CTTGAG	2 cut(s)	5, 269
BsaJI	CCNNGG	3 cut(s)	28, 370, 442
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	2 cut(s)	113, 264
BseBI	CCWGG	1 cut(s)	444
BseDI	CCNNGG	3 cut(s)	28, 370, 442
BseGI	GGATG	2 cut(s)	396, 457
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	2 cut(s)	353, 451
BseNI	ACTGG	2 cut(s)	113, 264
BseSI	GKGCMC	1 cut(s)	154
BseX3I	CGGCCG	1 cut(s)	367
Bsh1285I	CGRYCG	1 cut(s)	370
BshFI	GGCC	3 cut(s)	33, 152, 369
BsiEI	CGRYCG	1 cut(s)	370
BslI	CCNNNNNNNGG	1 cut(s)	124
BsnI	GGCC	3 cut(s)	33, 152, 369
Bsp120I	GGGCCC	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	2 cut(s)	315, 366
BspANI	GGCC	3 cut(s)	33, 152, 369
BspCNI	CTCAG	2 cut(s)	354, 450
BspLI	GGNNCC	3 cut(s)	111, 152, 153
BsrBI	CCGCTC	1 cut(s)	366
BsrI	ACTGG	2 cut(s)	113, 264
BssECI	CCNNGG	3 cut(s)	28, 370, 442
BssSI	CACGAG	1 cut(s)	309
BssT1I	CCWWGG	1 cut(s)	28
Bst2BI	CACGAG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	444
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstC8I	GCNNGC	2 cut(s)	317, 501
BstDEI	CTNAG	2 cut(s)	362, 437
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	2 cut(s)	396, 457
BstMCI	CGRYCG	1 cut(s)	370
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 372
BstNI	CCWGG	1 cut(s)	444
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	442
BstSLI	GKGCMC	1 cut(s)	154
BstZI	CGGCCG	1 cut(s)	367
BsuRI	GGCC	3 cut(s)	33, 152, 369
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	2 cut(s)	396, 457
Cac8I	GCNNGC	2 cut(s)	317, 501
Cfr13I	GGNCC	3 cut(s)	150, 151, 261
Csp6I	GTAC	1 cut(s)	428
CviAII	CATG	2 cut(s)	5, 29
CviQI	GTAC	1 cut(s)	428
DdeI	CTNAG	2 cut(s)	362, 437
EaeI	YGGCCR	1 cut(s)	367
EagI	CGGCCG	1 cut(s)	367
EclXI	CGGCCG	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	261
Eco52I	CGGCCG	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	442
EcoT14I	CCWWGG	1 cut(s)	28
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	2 cut(s)	8, 32
FalI	AAGNNNNNCTT	4 cut(s)	130, 162, 338, 370
FatI	CATG	2 cut(s)	4, 28
FauI	CCCGC	1 cut(s)	308
Fnu4HI	GCNGC	2 cut(s)	11, 367
FokI	GGATG	2 cut(s)	403, 444
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	2 cut(s)	11, 367
FspBI	CTAG	2 cut(s)	90, 526
GluI	GCNGC	2 cut(s)	11, 367
HaeIII	GGCC	3 cut(s)	33, 152, 369
Hin1II	CATG	2 cut(s)	8, 32
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	2 cut(s)	144, 256
Hpy188I	TCNGA	1 cut(s)	363
Hpy8I	GTNNAC	2 cut(s)	144, 256
HpyAV	CCTTC	2 cut(s)	128, 132
HpyCH4V	TGCA	2 cut(s)	4, 381
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 372
HpyF3I	CTNAG	2 cut(s)	362, 437
Hsp92II	CATG	2 cut(s)	8, 32
LmnI	GCTCC	2 cut(s)	41, 109
LpnPI	CCDG	8 cut(s)	39, 126, 244, 277, 429, 456, 481, 487
MaeI	CTAG	2 cut(s)	90, 526
MaeIII	GTNAC	2 cut(s)	266, 304
MbiI	CCGCTC	1 cut(s)	366
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	2 cut(s)	274, 452
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	8 cut(s)	44, 98, 125, 244, 305, 334, 365, 446
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	278
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	444
MvaI	CCWGG	1 cut(s)	444
MwoI	GCNNNNNNNGC	2 cut(s)	10, 372
NcoI	CCATGG	1 cut(s)	28
NlaIII	CATG	2 cut(s)	8, 32
NlaIV	GGNNCC	3 cut(s)	111, 152, 153
NmeAIII	GCCGAG	1 cut(s)	395
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	316
PdmI	GAANNNNTTC	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	12, 368
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspN4I	GGNNCC	3 cut(s)	111, 152, 153
PspOMI	GGGCCC	1 cut(s)	150
PspPI	GGNCC	3 cut(s)	150, 151, 261
RsaI	GTAC	1 cut(s)	429
RsaNI	GTAC	1 cut(s)	428
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	2 cut(s)	11, 367
Sau96I	GGNCC	3 cut(s)	150, 151, 261
ScrFI	CCNGG	1 cut(s)	444
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	5 cut(s)	58, 87, 143, 255, 438
SinI	GGWCC	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	2 cut(s)	20, 248
SmoI	CTYRAG	2 cut(s)	20, 248
Sse9I	AATT	2 cut(s)	274, 452
SsiI	CCGC	2 cut(s)	315, 366
SspMI	CTAG	2 cut(s)	90, 526
StyD4I	CCNGG	1 cut(s)	442
StyI	CCWWGG	1 cut(s)	28
TaqI	TCGA	1 cut(s)	282
TasI	AATT	2 cut(s)	274, 452
TauI	GCSGC	1 cut(s)	369
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseI	GCWGC	1 cut(s)	10
TspDTI	ATGAA	2 cut(s)	110, 407
VpaK11BI	GGWCC	1 cut(s)	261
XceI	RCATGY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	35
XmnI	GAANNNNTTC	1 cut(s)	278
XspI	CTAG	2 cut(s)	90, 526
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.