Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001666

Physical Location & Seq

Genomic Coordinates Reverse (-)

2004719 .. 2012255

Gene Structure 7537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g01610.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2718 bp

ATGCTGGCCAGTGGAAGTTTAGATAACACTATACACATCTGGAATATGAGCAATGGTATTTGCACTGCTGTTCTTAGGGGTCATTCTAGCTTGGTTAAAGGAGTTACTTGGGATCCTATTGGCTCCTTCATAGCAAGTCAATCAGATGATAAGACTGTAATTATTTGGCGAACAAGTGACTGGAGTCTTGTTCACAAAACAGATGGCCACTGGACAAAATCACTTGGATCTACCTTTTTCAGGCGGCTTGGATGGTCGCCTTGTGGTCATTTCATTACTACCACTCATGGGTTCCAGAAACCAAGGCATTCAGCACCTGTTCTAGAGAGAGGGGAATGGTCTGCTACATTTGACTTCTTGGGGCATAATGCTCCTGTGATTGTGGTGAAGTTTAACCATTCAATGTTTAAGAGGAATCTTTTCAATGCTCAAGAAGAGAAAGCTGCACCTGTTGGGTGGACCAATGGTGCTTCAAAAATAGGAGGGAAAGAAAAAGAACAACAACCTTATAATGTTATCGCAATCGGGAGTCAGGATCGTACAATAACTGTATGGACAACTGCTAGTCCCCGCCCTCTCTTTGTAGCAAAGCATTTCTTCACTCAAAGCGTTGTGGATTTATCTTGGAGCCCTGATGGTTATTCACTCTTTGCATGTTCTTTGGACGGTTCAGTGGCTACTTTCCATTTTGAAGCGAAAGAGCTTGGCCACCGGTTAAGTGATGCTGAACTAGATGAATTGAAGAGAAGTCGTTATGGCGATGTTAGAGGTAGGCAGGTAAACTTAGCAGAAAGTCCAGCACAGTTATTGCTTGAGGCAGCCTCTGCTAAGCAAGCCCCAAATAAAAAAGTGGTTAGGGATGTTCAGCAAACCCAGACAGTCAAACCTTCTGCTGATATGGGGGTCGCAACAACAGCATCTGATTGTCATGTTGATGATAGGAAGAAGAATGGAGGAGCTTCTGCTGATGATTTAAATAAAGTTTCATTGCCTGCCCGAATGAGTCCTCTAAAGCAGAGAGAATATAGACGACCTGATGGTCGAAAGAGGATTATTCCAGAGGCAGTTGGTGTGCCTCTTAGGAAGGAAAATATTTCTGTTGGGGCTCAATCCCAGGCACTTGACTTCCCTCTCATGCCTTCTGATCACAGAAAGGATGATATTGGTTTAGTTGCTGCTGATGGGAGGATTAAAGAAAATGTAATTAGGGAGACACTTGTGAGAGGCACTGATACAATGGACGGACAGGGGTCCACCGCTAGAGCTATGATTACAAACAGCCTTGTTATTGAGAAGGTTCCCACCTCCACAGGTAGAGATGAAAGAATAAATATAGAACAGTCAGGAACTGTGAACGCTTCTAATACAATACGGGGTTCTAGTCCTATTCTTTCAATCAGGGTGTTTGATAAGATGAAAGCAGAAGATGCTATACCATATTGCTTGGAGGCTCAGCCTAAGGAACATGCTGCAAATGACATTATTAACATGGGAAATACATTGATCTTGAAAGAAACAGAAATCACCTGCACAAGAGGGTTGCAAACGCTTTGGTCTGATAAAATATCAGGGAAAGTCACTGTATTAGCTGGAAATGTAAACTTCTGGGCTGTTGGATGTGAAGATGGATGCATCCAGGTTTACACAAAGTGTGGGAGACGTTCTATGCCGCCAATGATGGTAGGATCTGCAGCAGTTTTTATAGATTGTGACGAGTGCTGGAAGTTGTTTTTGGTCACCAGAAAAGGATCATTGTATCTATGGGATCTATCAAAGCGGAAATGTCTCCTTCATGACTCACTGTCATCTCTGGTTGCTTTAAATCCAAATCCTTCTGCAGACGATGCAGGCATGATCAAAGTTATATCAGCAAAGCTATCAAGATCAGGATCTCCTCTTGTTGTCCTCGCTACTCGCCATGCCTTCCTTTTTGACATGGGACTGATGTGTTGGCTTAGGGTAGCAGATGACTGCTTTTCTGGGTCAAATTTTGCAAGCTCCTGGCATTTGGGTTTGACTCAGAGCGGTGAGCTGGCTGGTTTGCAGGTTGATGTTAAGAAATATTTGGCTAGGAAGCCAGGTTGGAGCAGGGTGACTGACGATGGAGTACAGACACGTGCTCATTTGGAAGCTCAGCTGGCTTCTTTGCTGGCGTTAAAGTCCCCTAATGAATATCGCCAATGCCTTCTGTCATACATACGCTTCCTTGCCAGAGAAGCAGATGAGTCCCGTCTACGAGAAGTCTGTGAGAGTTTCCTTGGGCCTCCTACTGGAATGGTGGAAGCTACTTCAGATTCAAAGAACTTGGCATGGGATCCTTTTGTGCTTGGAATGAGCAAACATAAGCTCTTACGAGAAGATATTCTTCCAGCAATGGCTTCAAATCGAAAAGTACAACGTTTACTCAATGAATTCATGGATCTAATTTCCGAATATGAAAGTGCAGAAGTAAATATAAAGTCAAAAACTCAAACTTCACCAAAGGCACTTTCGTTAGCAGCTGATCCAATGGAGTCTTCTCCATCTGGTAAAAATAAAATGGACTCTCTCCCTGTGCCAACTGGTCAAGCTAAGCCTATTCCCGAAACTGATCAGAAGGACTCCACTCAGTTAGCAACAGATAGAGAAAATTCTGAGTCAACAGCTGATGATAAAGTTAATTCAGATCCACCAAATATCAATCACGTTAGTCTTACCCTACATAATGCAGGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0030874 GO:0030875 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031497 GO:0031935 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0034622 GO:0034724 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044877 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060968 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0140110 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hira WD40

Protein Analysis

906

Amino Acids

99.44

Weight (kDa)

8.19

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_CAF1B_HIR1	PF24105	11 - 373	4.4e-56	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	15 - 98	2.4e-07	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	16 - 203	3e-31	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	18 - 204	5.5e-17	Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta	PF25391	27 - 193	2.2e-11	G protein beta WD-40 repeat protein
WD40_CDC20-Fz	PF24807	54 - 264	2.2e-21	CDC20/Fizzy WD40 domain
WD40	PF00400	57 - 92	1.6e-06	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	66 - 271	1.5e-26	THOC3 beta-propeller domain
Beta-prop_WDR35_TULP_N	PF24797	68 - 230	9.8e-08	WDR35/TULP4 N-terminal
WD40_Prp19	PF24814	111 - 205	1.7e-14	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	111 - 195	1.1e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	112 - 210	1.5e-17	WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	112 - 209	2e-06	TEP-1 second beta-propeller
Beta-prop_WDR3_2nd	PF25172	115 - 210	3e-10	WDR3 second beta-propeller domain
WD40	PF00400	116 - 153	4.7e-10	WD domain, G-beta repeat
WD40_WDHD1_1st	PF24817	121 - 258	6.8e-16	WDHD1 first WD40 domain
Beta-prop_Aladin	PF25460	122 - 231	2.3e-08	Aladin seven-bladed propeller
WD40_MABP1-WDR62_2nd	PF24782	122 - 195	7.9e-06	MABP1/WDR62 second WD40 domain
WD40	PF00400	158 - 194	2.7e-06	WD domain, G-beta repeat
Hira	PF07569	690 - 889	1.1e-48	TUP1-like enhancer of split

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44530 AT3G44530 AT3G44530 AT3G44530
fragaria_vesca	FvH4_3g24580 FvH4_3g24580 FvH4_3g24580 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610
malus_domestica	MD00G1078300.v1.1 MD10G1043400.v1.1
prunus_persica	Prupe.8G049500_v2.0.a1 Prupe.8G049500_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1
pyrus_communis	pycom05g03110 pycom10g03040
rosa_chinensis	RchiOBHm_Chr1g0317731 RchiOBHm_Chr5g0044121
rosa_laevigata	RLG00000030587 RLG00000034243 RLG00000034244
rosa_multiflora	Rmu_sc0000939.1_g000028 Rmu_sc0001158.1_g000004
rosa_roxburghii	Rroxscaffold_1G00036920 Rroxscaffold_4G00330210
rosa_rugosa	Rorug01G0016900.1 Rorug05G0210500 Rorug05G0210600
rosa_samantha	Rh1AG029200 Rh1BG025400 Rh1CG026500 Rh1DG044000 Rh5AG294700 Rh5BG303400 Rh5CG330300 Rh5DG312200
rosa_wichuraiana	Rw0G013170 Rw0G019570 Rw5G027330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	510
AarI	CACCTGC	1 cut(s)	1535
AasI	GACNNNNNNGTC	1 cut(s)	1038
Acc36I	ACCTGC	4 cut(s)	766, 1535, 2035, 2699
AccBSI	CCGCTC	1 cut(s)	2025
AccI	GTMKAC	1 cut(s)	2233
AciI	CCGC	6 cut(s)	244, 571, 1257, 1670, 1777, 2025
AclI	AACGTT	1 cut(s)	2398
AcoI	YGGCCR	3 cut(s)	6, 205, 706
AcsI	RAATTY	3 cut(s)	1987, 2411, 2629
AcuI	CTGAAG	1 cut(s)	2274
AcvI	CACGTG	1 cut(s)	2117
AdeI	CACNNNGTG	1 cut(s)	1650
AfaI	GTAC	3 cut(s)	541, 2109, 2394
AfiI	CCNNNNNNNGG	3 cut(s)	240, 288, 2270
AflIII	ACRYGT	1 cut(s)	2114
AgeI	ACCGGT	1 cut(s)	711
AgsI	TTSAA	9 cut(s)	402, 424, 474, 692, 742, 1395, 1510, 2298, 2382
AhdI	GACNNNNNGTC	1 cut(s)	1801
AjnI	CCWGG	4 cut(s)	1113, 1635, 2000, 2077
AjuI	GAANNNNNNNTTGG	6 cut(s)	1715, 1747, 2473, 2500, 2505, 2532
Alw21I	GWGCWC	1 cut(s)	2122
Alw26I	GTCTC	3 cut(s)	1205, 1651, 1790
AlwNI	CAGNNNCTG	4 cut(s)	317, 824, 920, 1349
AoxI	GGCC	4 cut(s)	6, 205, 706, 2261
ApeKI	GCWGC	6 cut(s)	443, 818, 1175, 1469, 1691, 2498
ApoI	RAATTY	3 cut(s)	1987, 2411, 2629
AsiGI	ACCGGT	1 cut(s)	711
Asp700I	GAANNNNTTC	2 cut(s)	419, 2361
AspS9I	GGNCC	3 cut(s)	459, 1251, 2261
AsuHPI	GGTGA	6 cut(s)	397, 1516, 1729, 2039, 2104, 2469
AvaII	GGWCC	2 cut(s)	459, 1251
AxyI	CCTNAGG	1 cut(s)	1458
BalI	TGGCCA	3 cut(s)	8, 207, 708
BamHI	GGATCC	2 cut(s)	112, 2314
BanII	GRGCYC	2 cut(s)	632, 1108
BarI	GAAGNNNNNNTAC	2 cut(s)	1416, 1448
BbrPI	CACGTG	1 cut(s)	2117
BbsI	GAAGAC	1 cut(s)	2508
Bbv12I	GWGCWC	1 cut(s)	2122
BbvI	GCAGC	6 cut(s)	430, 830, 1162, 1456, 1703, 2510
BccI	CCATC	9 cut(s)	197, 246, 629, 1031, 1175, 1619, 1672, 2096, 2530
BciT130I	CCWGG	4 cut(s)	1115, 1637, 2002, 2079
BclI	TGATCA	3 cut(s)	1144, 1854, 2590
BcoDI	GTCTC	3 cut(s)	1205, 1651, 1790
BfaI	CTAG	7 cut(s)	87, 323, 564, 731, 1260, 1380, 2070
BfmI	CTRYAG	2 cut(s)	1689, 1836
BfuAI	ACCTGC	4 cut(s)	766, 1535, 2035, 2699
BisI	GCNGC	8 cut(s)	245, 444, 819, 1176, 1470, 1670, 1692, 2499
BlpI	GCTNAGC	4 cut(s)	828, 1452, 2133, 2571
BlsI	GCNGC	8 cut(s)	246, 445, 820, 1177, 1471, 1671, 1693, 2500
Bme1390I	CCNGG	4 cut(s)	1115, 1637, 2002, 2079
Bme18I	GGWCC	2 cut(s)	459, 1251
BmeRI	GACNNNNNGTC	1 cut(s)	1801
BmgT120I	GGNCC	3 cut(s)	459, 1251, 2261
BmiI	GGNNCC	7 cut(s)	114, 124, 293, 629, 1252, 1299, 2316
BmrFI	CCNGG	4 cut(s)	1115, 1637, 2002, 2079
BmsI	GCATC	6 cut(s)	712, 926, 1417, 1619, 1641, 1834
BoxI	GACNNNNGTC	2 cut(s)	183, 1249
BpiI	GAAGAC	1 cut(s)	2508
BplI	GAGNNNNNCTC	2 cut(s)	806, 838
BpmI	CTGGAG	1 cut(s)	202
Bpu10I	CCTNAGC	1 cut(s)	1955
Bpu1102I	GCTNAGC	4 cut(s)	828, 1452, 2133, 2571
BpuEI	CTTGAG	2 cut(s)	414, 833
BsaAI	YACGTR	1 cut(s)	2117
BsaBI	GATNNNNATC	1 cut(s)	1888
BsaJI	CCNNGG	3 cut(s)	302, 1113, 2257
BsaWI	WCCGGW	1 cut(s)	711
Bsc4I	CCNNNNNNNGG	3 cut(s)	240, 288, 2270
Bse118I	RCCGGY	1 cut(s)	711
Bse1I	ACTGG	5 cut(s)	9, 185, 215, 2275, 2566
Bse21I	CCTNAGG	1 cut(s)	1458
Bse3DI	GCAATG	3 cut(s)	58, 986, 2379
Bse8I	GATNNNNATC	1 cut(s)	1888
BseBI	CCWGG	4 cut(s)	1115, 1637, 2002, 2079
BseDI	CCNNGG	3 cut(s)	302, 1113, 2257
BseGI	GGATG	6 cut(s)	257, 865, 1162, 1622, 1632, 1634
BseJI	GATNNNNATC	1 cut(s)	1888
BseLI	CCNNNNNNNGG	3 cut(s)	240, 288, 2270
BseMI	GCAATG	3 cut(s)	58, 986, 2379
BseMII	CTCAG	5 cut(s)	1466, 2033, 2147, 2621, 2625
BseNI	ACTGG	5 cut(s)	9, 185, 215, 2275, 2566
BseRI	GAGGAG	2 cut(s)	969, 1884
BseXI	GCAGC	6 cut(s)	430, 830, 1162, 1456, 1703, 2510
BsgI	GTGCAG	3 cut(s)	429, 1513, 2463
BshFI	GGCC	4 cut(s)	8, 207, 708, 2263
BshTI	ACCGGT	1 cut(s)	711
BsiHKAI	GWGCWC	1 cut(s)	2122
BsiSI	CCGG	1 cut(s)	712
BslFI	GGGAC	4 cut(s)	552, 1953, 2146, 2212
BslI	CCNNNNNNNGG	3 cut(s)	240, 288, 2270
BsmAI	GTCTC	3 cut(s)	1205, 1651, 1790
BsmBI	CGTCTC	1 cut(s)	1651
BsmFI	GGGAC	4 cut(s)	552, 1953, 2146, 2212
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	4 cut(s)	8, 207, 708, 2263
Bsp1286I	GDGCHC	3 cut(s)	632, 1108, 2122
Bsp1720I	GCTNAGC	4 cut(s)	828, 1452, 2133, 2571
BspACI	CCGC	6 cut(s)	244, 571, 1257, 1670, 1777, 2025
BspANI	GGCC	4 cut(s)	8, 207, 708, 2263
BspCNI	CTCAG	5 cut(s)	1465, 2032, 2146, 2620, 2626
BspHI	TCATGA	1 cut(s)	1792
BspLI	GGNNCC	7 cut(s)	114, 124, 293, 629, 1252, 1299, 2316
BspMAI	CTGCAG	2 cut(s)	1693, 1840
BspMI	ACCTGC	4 cut(s)	766, 1535, 2035, 2699
BsrBI	CCGCTC	1 cut(s)	2025
BsrDI	GCAATG	3 cut(s)	58, 986, 2379
BsrFI	RCCGGY	1 cut(s)	711
BsrI	ACTGG	5 cut(s)	9, 185, 215, 2275, 2566
BssAI	RCCGGY	1 cut(s)	711
BssECI	CCNNGG	3 cut(s)	302, 1113, 2257
BssT1I	CCWWGG	2 cut(s)	302, 2257
Bst2UI	CCWGG	4 cut(s)	1115, 1637, 2002, 2079
Bst4CI	ACNGT	9 cut(s)	157, 550, 668, 804, 880, 1341, 1351, 1582, 1803
Bst6I	CTCTTC	2 cut(s)	429, 737
BstAPI	GCANNNNNTGC	3 cut(s)	824, 1427, 1844
BstBAI	YACGTR	1 cut(s)	2117
BstC8I	GCNNGC	8 cut(s)	6, 834, 993, 1849, 1996, 2034, 2139, 2151
BstEII	GGTNACC	1 cut(s)	1735
BstENI	CCTNNNNNAGG	1 cut(s)	238
BstF5I	GGATG	6 cut(s)	257, 865, 1162, 1622, 1632, 1634
BstMAI	GTCTC	3 cut(s)	1205, 1651, 1790
BstMWI	GCNNNNNNNGC	7 cut(s)	824, 833, 914, 1427, 1844, 2138, 2216
BstNI	CCWGG	4 cut(s)	1115, 1637, 2002, 2079
BstNSI	RCATGY	2 cut(s)	657, 1469
BstPAI	GACNNNNGTC	2 cut(s)	183, 1249
BstPI	GGTNACC	1 cut(s)	1735
BstSCI	CCNGG	4 cut(s)	1113, 1635, 2000, 2077
BstSFI	CTRYAG	2 cut(s)	1689, 1836
BstV1I	GCAGC	6 cut(s)	430, 830, 1162, 1456, 1703, 2510
BstV2I	GAAGAC	1 cut(s)	2508
BstX2I	RGATCY	8 cut(s)	112, 227, 1685, 1765, 1889, 2314, 2419, 2665
BstYI	RGATCY	8 cut(s)	112, 227, 1685, 1765, 1889, 2314, 2419, 2665
Bsu36I	CCTNAGG	1 cut(s)	1458
BsuRI	GGCC	4 cut(s)	8, 207, 708, 2263
BtgZI	GCGATG	1 cut(s)	774
BtsCI	GGATG	6 cut(s)	257, 865, 1162, 1622, 1632, 1634
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	7 cut(s)	16, 63, 208, 678, 1227, 1578, 1799
BveI	ACCTGC	4 cut(s)	766, 1535, 2035, 2699
Cac8I	GCNNGC	8 cut(s)	6, 834, 993, 1849, 1996, 2034, 2139, 2151
CaiI	CAGNNNCTG	4 cut(s)	317, 824, 920, 1349
CciI	TCATGA	1 cut(s)	1792
Cfr10I	RCCGGY	1 cut(s)	711
Cfr13I	GGNCC	3 cut(s)	459, 1251, 2261
Csp6I	GTAC	3 cut(s)	540, 2108, 2393
CspAI	ACCGGT	1 cut(s)	711
CviQI	GTAC	3 cut(s)	540, 2108, 2393
DraI	TTTAAA	2 cut(s)	975, 1821
DraIII	CACNNNGTG	1 cut(s)	1650
DrdI	GACNNNNNNGTC	1 cut(s)	1038
DriI	GACNNNNNGTC	1 cut(s)	1801
DseDI	GACNNNNNNGTC	1 cut(s)	1038
EaeI	YGGCCR	3 cut(s)	6, 205, 706
Eam1104I	CTCTTC	2 cut(s)	429, 737
Eam1105I	GACNNNNNGTC	1 cut(s)	1801
EarI	CTCTTC	2 cut(s)	429, 737
Eco130I	CCWWGG	2 cut(s)	302, 2257
Eco24I	GRGCYC	2 cut(s)	632, 1108
Eco47I	GGWCC	2 cut(s)	459, 1251
Eco57I	CTGAAG	1 cut(s)	2274
Eco72I	CACGTG	1 cut(s)	2117
Eco81I	CCTNAGG	1 cut(s)	1458
Eco91I	GGTNACC	1 cut(s)	1735
EcoNI	CCTNNNNNAGG	1 cut(s)	238
EcoO65I	GGTNACC	1 cut(s)	1735
EcoRI	GAATTC	1 cut(s)	2411
EcoRII	CCWGG	4 cut(s)	1113, 1635, 2000, 2077
EcoT14I	CCWWGG	2 cut(s)	302, 2257
EcoT22I	ATGCAT	1 cut(s)	1634
EcoT38I	GRGCYC	2 cut(s)	632, 1108
ErhI	CCWWGG	2 cut(s)	302, 2257
Esp3I	CGTCTC	1 cut(s)	1651
FalI	AAGNNNNNCTT	4 cut(s)	581, 613, 2349, 2381
FaqI	GGGAC	4 cut(s)	552, 1953, 2146, 2212
FauI	CCCGC	1 cut(s)	578
FbaI	TGATCA	3 cut(s)	1144, 1854, 2590
FblI	GTMKAC	1 cut(s)	2233
Fnu4HI	GCNGC	8 cut(s)	245, 444, 819, 1176, 1470, 1670, 1692, 2499
FokI	GGATG	6 cut(s)	264, 872, 1169, 1619, 1629, 1641
FriOI	GRGCYC	2 cut(s)	632, 1108
Fsp4HI	GCNGC	8 cut(s)	245, 444, 819, 1176, 1470, 1670, 1692, 2499
FspBI	CTAG	7 cut(s)	87, 323, 564, 731, 1260, 1380, 2070
GluI	GCNGC	8 cut(s)	245, 444, 819, 1176, 1470, 1670, 1692, 2499
GsuI	CTGGAG	1 cut(s)	202
HaeIII	GGCC	4 cut(s)	8, 207, 708, 2263
HapII	CCGG	1 cut(s)	712
HincII	GTYRAC	1 cut(s)	2640
HindII	GTYRAC	1 cut(s)	2640
HpaII	CCGG	1 cut(s)	712
HphI	GGTGA	6 cut(s)	397, 1516, 1729, 2039, 2104, 2469
HpyCH4III	ACNGT	9 cut(s)	157, 550, 668, 804, 880, 1341, 1351, 1582, 1803
HpyCH4IV	ACGT	4 cut(s)	1660, 2116, 2398, 2685
HpyF10VI	GCNNNNNNNGC	7 cut(s)	824, 833, 914, 1427, 1844, 2138, 2216
HpySE526I	ACGT	4 cut(s)	1660, 2116, 2398, 2685
Ksp22I	TGATCA	3 cut(s)	1144, 1854, 2590
LmnI	GCTCC	6 cut(s)	128, 376, 627, 956, 2003, 2085
Lsp1109I	GCAGC	6 cut(s)	430, 830, 1162, 1456, 1703, 2510
LweI	GCATC	6 cut(s)	712, 926, 1417, 1619, 1641, 1834
MaeI	CTAG	7 cut(s)	87, 323, 564, 731, 1260, 1380, 2070
MaeII	ACGT	4 cut(s)	1660, 2116, 2398, 2685
MaeIII	GTNAC	6 cut(s)	103, 176, 1576, 1709, 1735, 2092
MbiI	CCGCTC	1 cut(s)	2025
MflI	RGATCY	8 cut(s)	112, 227, 1685, 1765, 1889, 2314, 2419, 2665
MhlI	GDGCHC	3 cut(s)	632, 1108, 2122
MlsI	TGGCCA	3 cut(s)	8, 207, 708
MluCI	AATT	8 cut(s)	159, 737, 1203, 1987, 2411, 2424, 2629, 2659
MluNI	TGGCCA	3 cut(s)	8, 207, 708
MmeI	TCCRAC	2 cut(s)	1594, 2063
Mox20I	TGGCCA	3 cut(s)	8, 207, 708
Mph1103I	ATGCAT	1 cut(s)	1634
MroXI	GAANNNNTTC	2 cut(s)	419, 2361
MscI	TGGCCA	3 cut(s)	8, 207, 708
MslI	CAYNNNNRTG	1 cut(s)	933
Msp20I	TGGCCA	3 cut(s)	8, 207, 708
MspA1I	CMGCKG	3 cut(s)	2137, 2501, 2645
MspI	CCGG	1 cut(s)	712
MspR9I	CCNGG	4 cut(s)	1115, 1637, 2002, 2079
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	4 cut(s)	1115, 1637, 2002, 2079
MwoI	GCNNNNNNNGC	7 cut(s)	824, 833, 914, 1427, 1844, 2138, 2216
NlaIV	GGNNCC	7 cut(s)	114, 124, 293, 629, 1252, 1299, 2316
NmuCI	GTSAC	5 cut(s)	176, 1576, 1709, 1735, 2092
NsiI	ATGCAT	1 cut(s)	1634
NspI	RCATGY	2 cut(s)	657, 1469
PagI	TCATGA	1 cut(s)	1792
PaqCI	CACCTGC	1 cut(s)	1535
PctI	GAATGC	1 cut(s)	307
PdmI	GAANNNNTTC	2 cut(s)	419, 2361
PfeI	GAWTC	2 cut(s)	415, 2294
PinAI	ACCGGT	1 cut(s)	711
PkrI	GCNGC	8 cut(s)	246, 445, 820, 1177, 1471, 1671, 1693, 2500
PmaCI	CACGTG	1 cut(s)	2117
PmlI	CACGTG	1 cut(s)	2117
Ppu21I	YACGTR	1 cut(s)	2117
PshAI	GACNNNNGTC	2 cut(s)	183, 1249
PsiI	TTATAA	1 cut(s)	510
Psp1406I	AACGTT	1 cut(s)	2398
Psp6I	CCWGG	4 cut(s)	1113, 1635, 2000, 2077
PspCI	CACGTG	1 cut(s)	2117
PspEI	GGTNACC	1 cut(s)	1735
PspGI	CCWGG	4 cut(s)	1113, 1635, 2000, 2077
PspN4I	GGNNCC	7 cut(s)	114, 124, 293, 629, 1252, 1299, 2316
PspPI	GGNCC	3 cut(s)	459, 1251, 2261
PstI	CTGCAG	2 cut(s)	1693, 1840
PstNI	CAGNNNCTG	4 cut(s)	317, 824, 920, 1349
PsuI	RGATCY	8 cut(s)	112, 227, 1685, 1765, 1889, 2314, 2419, 2665
PvuII	CAGCTG	3 cut(s)	2137, 2501, 2645
RsaI	GTAC	3 cut(s)	541, 2109, 2394
RsaNI	GTAC	3 cut(s)	540, 2108, 2393
RseI	CAYNNNNRTG	1 cut(s)	933
SatI	GCNGC	8 cut(s)	245, 444, 819, 1176, 1470, 1670, 1692, 2499
Sau96I	GGNCC	3 cut(s)	459, 1251, 2261
ScrFI	CCNGG	4 cut(s)	1115, 1637, 2002, 2079
SduI	GDGCHC	3 cut(s)	632, 1108, 2122
SfaNI	GCATC	6 cut(s)	712, 926, 1417, 1619, 1641, 1834
SfcI	CTRYAG	2 cut(s)	1689, 1836
SinI	GGWCC	2 cut(s)	459, 1251
SmiI	ATTTAAAT	1 cut(s)	975
SmiMI	CAYNNNNRTG	1 cut(s)	933
SmlI	CTYRAG	2 cut(s)	429, 812
SmoI	CTYRAG	2 cut(s)	429, 812
Sse9I	AATT	8 cut(s)	159, 737, 1203, 1987, 2411, 2424, 2629, 2659
SsiI	CCGC	6 cut(s)	244, 571, 1257, 1670, 1777, 2025
SspI	AATATT	2 cut(s)	1093, 2063
SspMI	CTAG	7 cut(s)	87, 323, 564, 731, 1260, 1380, 2070
StyD4I	CCNGG	4 cut(s)	1113, 1635, 2000, 2077
StyI	CCWWGG	2 cut(s)	302, 2257
SwaI	ATTTAAAT	1 cut(s)	975
TaaI	ACNGT	9 cut(s)	157, 550, 668, 804, 880, 1341, 1351, 1582, 1803
TaiI	ACGT	4 cut(s)	1663, 2119, 2401, 2688
TaqI	TCGA	2 cut(s)	1042, 2386
TasI	AATT	8 cut(s)	159, 737, 1203, 1987, 2411, 2424, 2629, 2659
TatI	WGTACW	2 cut(s)	2107, 2392
TauI	GCSGC	2 cut(s)	247, 1672
TfiI	GAWTC	2 cut(s)	415, 2294
TscAI	CASTG	7 cut(s)	16, 70, 215, 678, 1234, 1585, 1806
TseFI	GTSAC	5 cut(s)	176, 1576, 1709, 1735, 2092
TseI	GCWGC	6 cut(s)	443, 818, 1175, 1469, 1691, 2498
Tsp45I	GTSAC	5 cut(s)	176, 1576, 1709, 1735, 2092
TspGWI	ACGGA	1 cut(s)	1257
TspRI	CASTG	7 cut(s)	16, 70, 215, 678, 1234, 1585, 1806
VpaK11BI	GGWCC	2 cut(s)	459, 1251
XagI	CCTNNNNNAGG	1 cut(s)	238
XapI	RAATTY	3 cut(s)	1987, 2411, 2629
XbaI	TCTAGA	1 cut(s)	322
XceI	RCATGY	2 cut(s)	657, 1469
XmiI	GTMKAC	1 cut(s)	2233
XmnI	GAANNNNTTC	2 cut(s)	419, 2361
XspI	CTAG	7 cut(s)	87, 323, 564, 731, 1260, 1380, 2070
Zsp2I	ATGCAT	1 cut(s)	1634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.