Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001666

Physical Location & Seq

Genomic Coordinates Reverse (-)

15580886 .. 15599128

Gene Structure 18243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1078300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3102 bp

ATGATTGCAGAGAAGCCCAGCTGGATCAGACATGAGGGAATGCAAATTTTCTCCATTGACGTTCAACCTGGTGGACTTAGGCTTGCCACTGGTGGGGGTGATCACAAGGTGCGGGTATGGAACATGAAATCCCTTGGCAGGGATTTGGATAATGAAGAATCATCAGCCCAGAGGCTACTCGCAACTCTCCGTGATCACTTTGGTTCTGTGAATTGTGTTAGGTGGGCTAAGCATGGTCGGTTTGTTGCATCAGGATCAGATGACCAAGTGATTCTAATTCATGAAAGAAAGCCTGGTTCAGGAACCACTGAGTTTGGCAGTGGAGAGCCACCTGACCTTGAAAATTGGAAAGTTGCAATGACTTTGAGAGGGCATACTGCAGATGTGGTGGATCTTAATTGGTCTCCAGATGACTCGATGTTGGCCAGTGGAAGTTTAGATAACACTATACACATCTGGAACATGAGCAATGGTATTTGCACTGCTGTTCTGAGGGGTCACTCTAGCCTGGTTAAAGGAGTTACTTGGGATCCTATTGGCTCCTTCATAGCAAGTCAGTCAGATGATAAAACTGTAATTATTTGGCGAACAAGTGACTGGAGTCTTGTGCACAGGACAGACGGCCATTGGCAAAAATCACTTGGATCTACCTTTTTCAGGCGGTTGGGATGGTCCCCTTGTGGCCACTTCATTACTACCACTCACGGATTCCAGAAACCAAGGCATTCTGCCCCTGTTCTAGAGAGAGGGGAATGGTCTGCTACATTTGACTTCTTAGGACATAATGCCCCTGTGATTGTAGTGAAGTTTAACCATTCAATGTTTAGGAGGAACGTTTCCAATGCTCAGGAAAAAGCTGCACCCGTTGGGTGGACTAATGGTGCTTCAAAGACAGGAGGAAAAGAGAAAGAACCACAACCTTATAATGTCATTGCTATTGGGAGTCAGGACCGGACTATAACAGTGTGGACTACTGCAAGTCCCCGACCCCTCTTCGTAGCAAAGCATTTCTTTACTCAAAGTGTTGTGGATTTATCCTGGAGCCCTGATGGTTATTCACTTTTTGCGTGTTCTTTGGATGGTTCAGTGGCAACTTTCCATTTTGATGTTAAAGAACTTGGCAACCGTTTAAGTGATGCTGAACTGGATGAATTGAAGAGAAACCGTTATGGTGATGTTAGGGGTCGGCAAGCAAATTTAGCTGAAAGCCCAGCTCAATTATTGCTCGAAGCAGCATCTGCTAAGCAAGCCCCAAGCAAAAAAGTGATTCTGGATGTTCAGCAAAACCAGACAGTTGTAAAACCTTCTGTTGATGCAACGGTTGCAACAAAAACTTCTGCAGATGGCTTAAATAAGGTTTCGATGCCTGCCAGAATTTCCAGTCCTGTGAAGCAGAGGGAATATAGACGCCCTGATGGTAGAAAGAGGATTATTCCAGAAGCAGTTGGGGTACCTCTGCAGCAGGAAAATATTTCTGCTGGGGTTCAGACCCAGGCACTTGATTTCCCTTCTATGCCTTCTGATAAAAAAAATGATGAGAATGGGTTAATTGCAGCTGATAGTGGCATCAAAGAAACATCTATTAGGGGAGCAATTGGCAGAAGCGCTGAAATAAAGGAGGGACATGGGGTAACTGCTAGAGCTATGATTACCAAAAGCCTTGTTATTGAGAAGGTTCCTGCCTCCACAGGTGGAGATGAAAGCATAGCTGTGGAACAGTCGGGGAATTTGAAGGCTTCTAGTTTGGCAGGTTCTTCATGTTCCACTCTTTCAATTAGGGTGCTAGATAGGAAAGAAGGAGAAGGCAATGTACCAATTTGCTTGGAAGCTCGACCTCGGGAACACGCTGCAAACGACATTGTTGGCATGGGAAATACATTTATCATGAAAGAAACAGAAATTACTTGCACAAGAGGGTTGCAAACTCTTTGGTCAGATAGGATATCAGGGAAAGTCACTGTTTTAGCTGGAAACGCAAACTTCTGGGCTGTTGGGTGTGAAGATGGATGCATACAGGTTTACACAAAGTGTGGGAGGCGTGCTATGCCAACTATGATGGTAGGATCTGCAGCAATATTTATAGATTGTGACGAGTGCTGGAAATTATTTTTGGTCACAAGAAAAGGATCCTTTTATGTATGGGATCTATTAAAGCGGAATTGCCTCCTCCATGACTCATTGGCATCTCTGGTCGCTTCAAACCCAAACCCATCTGCAAAAGACGCAGGTGTGATCAAAGTTATATCAGCAAAGCTATCAAGATCTGGTTCACCTCTTGTTGTTCTTGCCACTCGCCATGCCTTCCTCTTTGATATTAGCCTGATGTGTTGGCTTAGGGTTGCAGATGATTGCTTTCCTGGGTCAAATTTTGCAAGCTCTTGGCATTCGGGTTCAGCTCAGGGTGGTGAGCTGGCTGCTTTGCAAGTTGATGTTAGGAAATATGTGGCCAGAAAGCCAGGTTGGAGCAGGGTAACAGATGATGGAGTGCAGACACGTGCTCACTTGGAGGCTCAGTTAGCTTCCTCGCTAGCATTAAAGTCAGCTAAAGATTATCGCCAATGCCTTCTATCATATATACGCTTCCTTGCAAGGGAAGCAGATGAGTCTCGTTTACGAGAAGTGTGTGAGAGTTTTCTTGGACCTCCAACTGGGATGGTGGACGATACAACTTTAGATTTAAACAACTCGGCATGGGATCCTTGTGTGCTTGGAATGAGGAAACATAAACTTTTACGAGAAGATATCCTTCCGGCAATGGCTTCAAATAGAAAAGTACAGAGATTGCTTAATGAATTCATGGATCTCATTTCCGAATATGAAAGCGCTGAAACAAATATAGAGAAAAAGATTCAAACTTCGCTGACAGCACGTCAACCGGCAGCTGATGAAATGGACTCTGCTCCTTCTAGGACAAATGAAATGGACATTGTACCTGCAGCACCAGAGAAAACGAAGTCTGTTCCTGCTTCAACTGACCAAAAGGACTCTTCCCAGCTAGCAACAGATGAAGAAAATTCTGCTCCGGTAGCAGAAGACAAAGTTAATTCAGATCCACCAATGGGCAATCAAGTTAGTGAAGCTGCACAAGATGCAGGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0030874 GO:0030875 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031497 GO:0031935 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0034622 GO:0034724 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044877 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060968 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0140110 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hira WD40

Protein Analysis

1034

Amino Acids

112.74

Weight (kDa)

6.68

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_CAF1B_HIR1	PF24105	11 - 206	6.3e-45	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	12 - 99	4.9e-07	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	15 - 204	7.2e-32	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	15 - 100	2.4e-08	THOC3 beta-propeller domain
Beta-prop_EML_2	PF23414	18 - 205	5.4e-16	Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz	PF24807	55 - 264	5.1e-21	CDC20/Fizzy WD40 domain
WD40	PF00400	58 - 93	3.2e-06	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	67 - 272	1.6e-25	THOC3 beta-propeller domain
Beta-prop_WDR35_TULP_N	PF24797	69 - 231	2.6e-07	WDR35/TULP4 N-terminal
WD40_Gbeta	PF25391	111 - 194	5.1e-11	G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_2nd	PF25168	112 - 196	1.2e-07	WDR36/Utp21 second beta-propeller domain
WD40_Prp19	PF24814	112 - 206	1.9e-14	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	113 - 212	4.3e-18	WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	115 - 209	2.7e-06	TEP-1 second beta-propeller
Beta-prop_WDR3_2nd	PF25172	116 - 212	3.4e-10	WDR3 second beta-propeller domain
WD40	PF00400	117 - 154	5.6e-10	WD domain, G-beta repeat
WD40_WDHD1_1st	PF24817	121 - 259	1.5e-15	WDHD1 first WD40 domain
Beta-prop_Aladin	PF25460	123 - 232	1.8e-08	Aladin seven-bladed propeller
WD40	PF00400	159 - 195	2.7e-06	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	216 - 373	1.3e-09	CAF1B/HIR1 beta-propeller domain
Hira	PF07569	678 - 877	1.9e-49	TUP1-like enhancer of split

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44530 AT3G44530 AT3G44530 AT3G44530
fragaria_vesca	FvH4_3g24580 FvH4_3g24580 FvH4_3g24580 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610
malus_domestica	MD00G1078300.v1.1 MD10G1043400.v1.1
prunus_persica	Prupe.8G049500_v2.0.a1 Prupe.8G049500_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1
pyrus_communis	pycom05g03110 pycom10g03040
rosa_chinensis	RchiOBHm_Chr1g0317731 RchiOBHm_Chr5g0044121
rosa_laevigata	RLG00000030587 RLG00000034243 RLG00000034244
rosa_multiflora	Rmu_sc0000939.1_g000028 Rmu_sc0001158.1_g000004
rosa_roxburghii	Rroxscaffold_1G00036920 Rroxscaffold_4G00330210
rosa_rugosa	Rorug01G0016900.1 Rorug05G0210500 Rorug05G0210600
rosa_samantha	Rh1AG029200 Rh1BG025400 Rh1CG026500 Rh1DG044000 Rh5AG294700 Rh5BG303400 Rh5CG330300 Rh5DG312200
rosa_wichuraiana	Rw0G013170 Rw0G019570 Rw5G027330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	924
AarI	CACCTGC	1 cut(s)	2216
Acc36I	ACCTGC	4 cut(s)	1739, 2216, 2941, 3083
Acc65I	GGTACC	1 cut(s)	1450
AccB1I	GGYRCC	1 cut(s)	1450
AciI	CCGC	3 cut(s)	112, 661, 2155
AclI	AACGTT	1 cut(s)	834
AcoI	YGGCCR	4 cut(s)	423, 622, 682, 2445
AcsI	RAATTY	7 cut(s)	45, 1195, 1374, 1726, 2365, 2792, 3013
AcvI	CACGTG	1 cut(s)	2495
AcyI	GRCGYC	1 cut(s)	1408
AdeI	CACNNNGTG	2 cut(s)	109, 2028
AfaI	GTAC	4 cut(s)	1452, 1812, 2775, 2931
AfeI	AGCGCT	2 cut(s)	1606, 2824
AfiI	CCNNNNNNNGG	9 cut(s)	93, 138, 139, 299, 657, 870, 2590, 2648, 3059
AflIII	ACRYGT	1 cut(s)	2492
AhdI	GACNNNNNGTC	1 cut(s)	2868
AjiI	CACGTC	1 cut(s)	2870
AjnI	CCWGG	7 cut(s)	67, 292, 507, 1037, 1491, 2356, 2455
AjuI	GAANNNNNNNTTGG	4 cut(s)	2093, 2125, 2443, 2475
AloI	GAACNNNNNNTCC	2 cut(s)	113, 145
Alw21I	GWGCWC	2 cut(s)	612, 2500
Alw26I	GTCTC	2 cut(s)	408, 2610
Alw44I	GTGCAC	1 cut(s)	608
AlwNI	CAGNNNCTG	1 cut(s)	1238
Ama87I	CYCGRG	1 cut(s)	1836
Aor51HI	AGCGCT	2 cut(s)	1606, 2824
AoxI	GGCC	4 cut(s)	423, 622, 682, 2445
ApaLI	GTGCAC	1 cut(s)	608
ApoI	RAATTY	7 cut(s)	45, 1195, 1374, 1726, 2365, 2792, 3013
Asp718I	GGTACC	1 cut(s)	1450
AspLEI	GCGC	2 cut(s)	1607, 2825
AspS9I	GGNCC	3 cut(s)	672, 949, 2639
AsuHPI	GGTGA	4 cut(s)	110, 1184, 2262, 2417
AsuNHI	GCTAGC	2 cut(s)	2527, 2995
AvaI	CYCGRG	1 cut(s)	1836
AvaII	GGWCC	3 cut(s)	672, 949, 2639
BaeGI	GKGCMC	1 cut(s)	612
BalI	TGGCCA	3 cut(s)	425, 684, 2447
BamHI	GGATCC	3 cut(s)	529, 2126, 2695
BanI	GGYRCC	1 cut(s)	1450
BanII	GRGCYC	1 cut(s)	1046
BarI	GAAGNNNNNNTAC	2 cut(s)	1794, 1826
BbrPI	CACGTG	1 cut(s)	2495
BbsI	GAAGAC	1 cut(s)	3039
Bbv12I	GWGCWC	2 cut(s)	612, 2500
BceAI	ACGGC	1 cut(s)	637
BciT130I	CCWGG	7 cut(s)	69, 294, 509, 1039, 1493, 2358, 2457
BclI	TGATCA	3 cut(s)	100, 193, 2232
BcoDI	GTCTC	2 cut(s)	408, 2610
BfaI	CTAG	8 cut(s)	504, 740, 1638, 1740, 1784, 2528, 2907, 2996
BfmI	CTRYAG	5 cut(s)	378, 1338, 1457, 2067, 2934
BfoI	RGCGCY	2 cut(s)	1608, 2826
BfuAI	ACCTGC	4 cut(s)	1739, 2216, 2941, 3083
BglII	AGATCT	1 cut(s)	2261
BlpI	GCTNAGC	2 cut(s)	228, 1242
Bme1390I	CCNGG	7 cut(s)	69, 294, 509, 1039, 1493, 2358, 2457
Bme18I	GGWCC	3 cut(s)	672, 949, 2639
BmeRI	GACNNNNNGTC	1 cut(s)	2868
BmeT110I	CYCGRG	1 cut(s)	1836
BmgBI	CACGTC	1 cut(s)	2870
BmgT120I	GGNCC	3 cut(s)	672, 949, 2639
BmiI	GGNNCC	9 cut(s)	304, 531, 541, 674, 1043, 1452, 1677, 2128, 2697
BmrFI	CCNGG	7 cut(s)	69, 294, 509, 1039, 1493, 2358, 2457
BmrI	ACTGGG	1 cut(s)	2658
BmsI	GCATC	9 cut(s)	257, 1126, 1244, 1303, 1353, 1575, 1997, 2192, 3079
BmtI	GCTAGC	2 cut(s)	2531, 2999
BmuI	ACTGGG	1 cut(s)	2658
BoxI	GACNNNNGTC	1 cut(s)	600
BpiI	GAAGAC	1 cut(s)	3039
BpmI	CTGGAG	3 cut(s)	390, 619, 1060
Bpu10I	CCTNAGC	3 cut(s)	846, 2333, 2397
Bpu1102I	GCTNAGC	2 cut(s)	228, 1242
BsaAI	YACGTR	1 cut(s)	2495
BsaHI	GRCGYC	1 cut(s)	1408
BsaI	GGTCTC	1 cut(s)	408
BsaJI	CCNNGG	5 cut(s)	133, 719, 1491, 1835, 2357
BsaWI	WCCGGW	2 cut(s)	951, 3022
BsaXI	ACNNNNNCTCC	2 cut(s)	2498, 2528
Bsc4I	CCNNNNNNNGG	9 cut(s)	93, 138, 139, 299, 657, 870, 2590, 2648, 3059
Bse118I	RCCGGY	1 cut(s)	2875
Bse1I	ACTGG	6 cut(s)	94, 426, 602, 1149, 1380, 2653
Bse3DI	GCAATG	5 cut(s)	363, 475, 930, 1813, 2760
BseBI	CCWGG	7 cut(s)	69, 294, 509, 1039, 1493, 2358, 2457
BseDI	CCNNGG	5 cut(s)	133, 719, 1491, 1835, 2357
BseGI	GGATG	6 cut(s)	674, 1084, 1153, 1279, 2012, 2658
BseLI	CCNNNNNNNGG	9 cut(s)	93, 138, 139, 299, 657, 870, 2590, 2648, 3059
BseMI	GCAATG	5 cut(s)	363, 475, 930, 1813, 2760
BseMII	CTCAG	5 cut(s)	300, 482, 860, 2411, 2525
BseNI	ACTGG	6 cut(s)	94, 426, 602, 1149, 1380, 2653
BseRI	GAGGAG	1 cut(s)	2156
BseSI	GKGCMC	1 cut(s)	612
BseYI	CCCAGC	4 cut(s)	17, 1210, 1478, 2991
BsgI	GTGCAG	3 cut(s)	843, 2507, 3066
BshFI	GGCC	4 cut(s)	425, 624, 684, 2447
BshNI	GGYRCC	1 cut(s)	1450
BsiHKAI	GWGCWC	2 cut(s)	612, 2500
BsiHKCI	CYCGRG	1 cut(s)	1836
BsiSI	CCGG	4 cut(s)	952, 2750, 2876, 3023
BslFI	GGGAC	3 cut(s)	658, 966, 1635
BslI	CCNNNNNNNGG	9 cut(s)	93, 138, 139, 299, 657, 870, 2590, 2648, 3059
BsmAI	GTCTC	2 cut(s)	408, 2610
BsmFI	GGGAC	3 cut(s)	658, 966, 1635
BsmI	GAATGC	3 cut(s)	45, 724, 2383
BsnI	GGCC	4 cut(s)	425, 624, 684, 2447
Bso31I	GGTCTC	1 cut(s)	408
BsoBI	CYCGRG	1 cut(s)	1836
Bsp1286I	GDGCHC	3 cut(s)	612, 1046, 2500
Bsp1720I	GCTNAGC	2 cut(s)	228, 1242
BspACI	CCGC	3 cut(s)	112, 661, 2155
BspANI	GGCC	4 cut(s)	425, 624, 684, 2447
BspCNI	CTCAG	5 cut(s)	301, 483, 859, 2410, 2524
BspHI	TCATGA	2 cut(s)	280, 1884
BspLI	GGNNCC	9 cut(s)	304, 531, 541, 674, 1043, 1452, 1677, 2128, 2697
BspMAI	CTGCAG	5 cut(s)	382, 1342, 1461, 2071, 2938
BspMI	ACCTGC	4 cut(s)	1739, 2216, 2941, 3083
BspOI	GCTAGC	2 cut(s)	2531, 2999
BspT107I	GGYRCC	1 cut(s)	1450
BspTNI	GGTCTC	1 cut(s)	408
BsrDI	GCAATG	5 cut(s)	363, 475, 930, 1813, 2760
BsrFI	RCCGGY	1 cut(s)	2875
BsrI	ACTGG	6 cut(s)	94, 426, 602, 1149, 1380, 2653
BssAI	RCCGGY	1 cut(s)	2875
BssECI	CCNNGG	5 cut(s)	133, 719, 1491, 1835, 2357
BssNI	GRCGYC	1 cut(s)	1408
BssT1I	CCWWGG	2 cut(s)	133, 719
Bst2UI	CCWGG	7 cut(s)	69, 294, 509, 1039, 1493, 2358, 2457
Bst4CI	ACNGT	8 cut(s)	574, 964, 1127, 1166, 1294, 1321, 1719, 1960
Bst6I	CTCTTC	3 cut(s)	998, 1151, 2992
BstACI	GRCGYC	1 cut(s)	1408
BstAPI	GCANNNNNTGC	3 cut(s)	1238, 1322, 3089
BstBAI	YACGTR	1 cut(s)	2495
BstC8I	GCNNGC	9 cut(s)	84, 1191, 1248, 1368, 2040, 2374, 2412, 2529, 2997
BstENI	CCTNNNNNAGG	2 cut(s)	297, 655
BstF5I	GGATG	6 cut(s)	674, 1084, 1153, 1279, 2012, 2658
BstH2I	RGCGCY	2 cut(s)	1608, 2826
BstHHI	GCGC	2 cut(s)	1607, 2825
BstMAI	GTCTC	2 cut(s)	408, 2610
BstNI	CCWGG	7 cut(s)	69, 294, 509, 1039, 1493, 2358, 2457
BstPAI	GACNNNNGTC	1 cut(s)	600
BstSCI	CCNGG	7 cut(s)	67, 292, 507, 1037, 1491, 2356, 2455
BstSFI	CTRYAG	5 cut(s)	378, 1338, 1457, 2067, 2934
BstSLI	GKGCMC	1 cut(s)	612
BstV2I	GAAGAC	1 cut(s)	3039
BsuRI	GGCC	4 cut(s)	425, 624, 684, 2447
BtrI	CACGTC	1 cut(s)	2870
BtsCI	GGATG	6 cut(s)	674, 1084, 1153, 1279, 2012, 2658
BtsI	GCAGTG	2 cut(s)	325, 480
BtsIMutI	CAGTG	8 cut(s)	87, 306, 325, 433, 480, 969, 1092, 1956
BveI	ACCTGC	4 cut(s)	1739, 2216, 2941, 3083
Cac8I	GCNNGC	9 cut(s)	84, 1191, 1248, 1368, 2040, 2374, 2412, 2529, 2997
CaiI	CAGNNNCTG	1 cut(s)	1238
CciI	TCATGA	2 cut(s)	280, 1884
CfoI	GCGC	2 cut(s)	1607, 2825
Cfr10I	RCCGGY	1 cut(s)	2875
Cfr13I	GGNCC	3 cut(s)	672, 949, 2639
CseI	GACGC	2 cut(s)	1416, 2231
CsiI	ACCWGGT	1 cut(s)	67
Csp6I	GTAC	4 cut(s)	1451, 1811, 2774, 2930
CspCI	CAANNNNNGTGG	2 cut(s)	295, 330
CviQI	GTAC	4 cut(s)	1451, 1811, 2774, 2930
DraI	TTTAAA	1 cut(s)	2679
DraIII	CACNNNGTG	2 cut(s)	109, 2028
DriI	GACNNNNNGTC	1 cut(s)	2868
EaeI	YGGCCR	4 cut(s)	423, 622, 682, 2445
Eam1104I	CTCTTC	3 cut(s)	998, 1151, 2992
Eam1105I	GACNNNNNGTC	1 cut(s)	2868
EarI	CTCTTC	3 cut(s)	998, 1151, 2992
Eco130I	CCWWGG	2 cut(s)	133, 719
Eco24I	GRGCYC	1 cut(s)	1046
Eco31I	GGTCTC	1 cut(s)	408
Eco32I	GATATC	2 cut(s)	1944, 2743
Eco47I	GGWCC	3 cut(s)	672, 949, 2639
Eco47III	AGCGCT	2 cut(s)	1606, 2824
Eco72I	CACGTG	1 cut(s)	2495
Eco88I	CYCGRG	1 cut(s)	1836
EcoNI	CCTNNNNNAGG	2 cut(s)	297, 655
EcoRI	GAATTC	1 cut(s)	2792
EcoRII	CCWGG	7 cut(s)	67, 292, 507, 1037, 1491, 2356, 2455
EcoRV	GATATC	2 cut(s)	1944, 2743
EcoT14I	CCWWGG	2 cut(s)	133, 719
EcoT22I	ATGCAT	1 cut(s)	2012
EcoT38I	GRGCYC	1 cut(s)	1046
ErhI	CCWWGG	2 cut(s)	133, 719
FalI	AAGNNNNNCTT	4 cut(s)	995, 1027, 2730, 2762
FaqI	GGGAC	3 cut(s)	658, 966, 1635
FauI	CCCGC	1 cut(s)	105
FbaI	TGATCA	3 cut(s)	100, 193, 2232
FokI	GGATG	6 cut(s)	681, 1091, 1160, 1286, 2019, 2665
FriOI	GRGCYC	1 cut(s)	1046
FspBI	CTAG	8 cut(s)	504, 740, 1638, 1740, 1784, 2528, 2907, 2996
GlaI	GCGC	2 cut(s)	1606, 2824
GsaI	CCCAGC	4 cut(s)	21, 1214, 1482, 2995
GsuI	CTGGAG	3 cut(s)	390, 619, 1060
HaeII	RGCGCY	2 cut(s)	1608, 2826
HaeIII	GGCC	4 cut(s)	425, 624, 684, 2447
HapII	CCGG	4 cut(s)	952, 2750, 2876, 3023
HgaI	GACGC	2 cut(s)	1416, 2231
HhaI	GCGC	2 cut(s)	1607, 2825
Hin1I	GRCGYC	1 cut(s)	1408
Hin6I	GCGC	2 cut(s)	1605, 2823
HinP1I	GCGC	2 cut(s)	1605, 2823
HincII	GTYRAC	1 cut(s)	2873
HindII	GTYRAC	1 cut(s)	2873
HpaII	CCGG	4 cut(s)	952, 2750, 2876, 3023
HphI	GGTGA	4 cut(s)	110, 1184, 2262, 2417
Hpy166II	GTNNAC	9 cut(s)	74, 610, 873, 969, 2020, 2270, 2612, 2659, 2873
Hpy188I	TCNGA	9 cut(s)	29, 259, 492, 562, 1488, 1522, 1936, 2812, 3049
Hpy8I	GTNNAC	9 cut(s)	74, 610, 873, 969, 2020, 2270, 2612, 2659, 2873
HpyCH4III	ACNGT	8 cut(s)	574, 964, 1127, 1166, 1294, 1321, 1719, 1960
HpyCH4IV	ACGT	4 cut(s)	60, 834, 2494, 2869
HpySE526I	ACGT	4 cut(s)	60, 834, 2494, 2869
Hsp92I	GRCGYC	1 cut(s)	1408
HspAI	GCGC	2 cut(s)	1605, 2823
KpnI	GGTACC	1 cut(s)	1454
Ksp22I	TGATCA	3 cut(s)	100, 193, 2232
LmnI	GCTCC	6 cut(s)	545, 1041, 1589, 2463, 2905, 3025
LweI	GCATC	9 cut(s)	257, 1126, 1244, 1303, 1353, 1575, 1997, 2192, 3079
MabI	ACCWGGT	1 cut(s)	67
MaeI	CTAG	8 cut(s)	504, 740, 1638, 1740, 1784, 2528, 2907, 2996
MaeII	ACGT	4 cut(s)	60, 834, 2494, 2869
MaeIII	GTNAC	8 cut(s)	497, 520, 593, 1630, 1954, 2087, 2113, 2470
MboII	GAAGA	9 cut(s)	167, 985, 1168, 1746, 2012, 2750, 2979, 3020, 3044
MfeI	CAATTG	1 cut(s)	1593
MhlI	GDGCHC	3 cut(s)	612, 1046, 2500
MlsI	TGGCCA	3 cut(s)	425, 684, 2447
MluNI	TGGCCA	3 cut(s)	425, 684, 2447
MlyI	GAGTC	7 cut(s)	407, 610, 952, 2168, 2612, 2888, 2978
MmeI	TCCRAC	2 cut(s)	2441, 2669
Mox20I	TGGCCA	3 cut(s)	425, 684, 2447
Mph1103I	ATGCAT	1 cut(s)	2012
MscI	TGGCCA	3 cut(s)	425, 684, 2447
MslI	CAYNNNNRTG	2 cut(s)	1104, 1709
Msp20I	TGGCCA	3 cut(s)	425, 684, 2447
MspA1I	CMGCKG	3 cut(s)	21, 1556, 2882
MspI	CCGG	4 cut(s)	952, 2750, 2876, 3023
MspR9I	CCNGG	7 cut(s)	69, 294, 509, 1039, 1493, 2358, 2457
MunI	CAATTG	1 cut(s)	1593
Mva1269I	GAATGC	3 cut(s)	45, 724, 2383
MvaI	CCWGG	7 cut(s)	69, 294, 509, 1039, 1493, 2358, 2457
NheI	GCTAGC	2 cut(s)	2527, 2995
NlaIV	GGNNCC	9 cut(s)	304, 531, 541, 674, 1043, 1452, 1677, 2128, 2697
NmeAIII	GCCGAG	1 cut(s)	2666
NmuCI	GTSAC	5 cut(s)	497, 593, 1954, 2087, 2113
NsiI	ATGCAT	1 cut(s)	2012
PagI	TCATGA	2 cut(s)	280, 1884
PaqCI	CACCTGC	1 cut(s)	2216
PcsI	WCGNNNNNNNCGW	1 cut(s)	1851
PctI	GAATGC	3 cut(s)	45, 724, 2383
PfeI	GAWTC	5 cut(s)	158, 271, 708, 1267, 2848
PfoI	TCCNGGA	1 cut(s)	1037
PleI	GAGTC	7 cut(s)	407, 609, 951, 2168, 2611, 2888, 2978
PmaCI	CACGTG	1 cut(s)	2495
PmlI	CACGTG	1 cut(s)	2495
PpsI	GAGTC	7 cut(s)	407, 609, 951, 2168, 2611, 2888, 2978
Ppu21I	YACGTR	1 cut(s)	2495
PshAI	GACNNNNGTC	1 cut(s)	600
PsiI	TTATAA	1 cut(s)	924
Psp1406I	AACGTT	1 cut(s)	834
Psp6I	CCWGG	7 cut(s)	67, 292, 507, 1037, 1491, 2356, 2455
PspCI	CACGTG	1 cut(s)	2495
PspFI	CCCAGC	4 cut(s)	17, 1210, 1478, 2991
PspGI	CCWGG	7 cut(s)	67, 292, 507, 1037, 1491, 2356, 2455
PspN4I	GGNNCC	9 cut(s)	304, 531, 541, 674, 1043, 1452, 1677, 2128, 2697
PspPI	GGNCC	3 cut(s)	672, 949, 2639
PstI	CTGCAG	5 cut(s)	382, 1342, 1461, 2071, 2938
PstNI	CAGNNNCTG	1 cut(s)	1238
PvuII	CAGCTG	3 cut(s)	21, 1556, 2882
RsaI	GTAC	4 cut(s)	1452, 1812, 2775, 2931
RsaNI	GTAC	4 cut(s)	1451, 1811, 2774, 2930
RseI	CAYNNNNRTG	2 cut(s)	1104, 1709
Sau96I	GGNCC	3 cut(s)	672, 949, 2639
SchI	GAGTC	7 cut(s)	407, 610, 952, 2168, 2612, 2888, 2978
ScrFI	CCNGG	7 cut(s)	69, 294, 509, 1039, 1493, 2358, 2457
SduI	GDGCHC	3 cut(s)	612, 1046, 2500
SexAI	ACCWGGT	1 cut(s)	67
SfaNI	GCATC	9 cut(s)	257, 1126, 1244, 1303, 1353, 1575, 1997, 2192, 3079
SfcI	CTRYAG	5 cut(s)	378, 1338, 1457, 2067, 2934
SinI	GGWCC	3 cut(s)	672, 949, 2639
SmiMI	CAYNNNNRTG	2 cut(s)	1104, 1709
SsiI	CCGC	3 cut(s)	112, 661, 2155
SspI	AATATT	2 cut(s)	1471, 2076
SspMI	CTAG	8 cut(s)	504, 740, 1638, 1740, 1784, 2528, 2907, 2996
StyD4I	CCNGG	7 cut(s)	67, 292, 507, 1037, 1491, 2356, 2455
StyI	CCWWGG	2 cut(s)	133, 719
TaaI	ACNGT	8 cut(s)	574, 964, 1127, 1166, 1294, 1321, 1719, 1960
TaiI	ACGT	4 cut(s)	63, 837, 2497, 2872
TaqI	TCGA	4 cut(s)	416, 1227, 1361, 1831
TatI	WGTACW	1 cut(s)	2773
TfiI	GAWTC	5 cut(s)	158, 271, 708, 1267, 2848
TscAI	CASTG	8 cut(s)	94, 313, 325, 433, 487, 969, 1092, 1963
TseFI	GTSAC	5 cut(s)	497, 593, 1954, 2087, 2113
Tsp45I	GTSAC	5 cut(s)	497, 593, 1954, 2087, 2113
TspGWI	ACGGA	2 cut(s)	179, 720
TspRI	CASTG	8 cut(s)	94, 313, 325, 433, 487, 969, 1092, 1963
VneI	GTGCAC	1 cut(s)	608
VpaK11BI	GGWCC	3 cut(s)	672, 949, 2639
XagI	CCTNNNNNAGG	2 cut(s)	297, 655
XapI	RAATTY	7 cut(s)	45, 1195, 1374, 1726, 2365, 2792, 3013
XbaI	TCTAGA	1 cut(s)	739
XspI	CTAG	8 cut(s)	504, 740, 1638, 1740, 1784, 2528, 2907, 2996
Zsp2I	ATGCAT	1 cut(s)	2012

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.