Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001666

Physical Location & Seq

Genomic Coordinates Forward (+)

5384726 .. 5388440

Gene Structure 3715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G049500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCTGTTCACTTCATATCGTACTCCTCCAGCTCAAATAAAATAGAAGCAGATGAGTCTCGCTTACGAGAAGTCTGTGAGAGTTTCCTTGGACCTCCAACTGGGATGGTGGAGGATACGCCTTTAGATCCAAAGAACCTGGCATGGGATCCTTATGTGCTTGGAATGAGGAAACATAAACTCTTACGAGAAGATATTCTTCCGGCAATGGCTTCAAATAGAAAAGTACAGCGATTGCTTAATGAATTCATGGATCTCATTTCCGAATATGAAAGCGCTGAAACAAATCTAGAGAAAAGGTCTCAAACTTCACCAACAGCACGTCCACCAGCAGCTGATCAAATGGACTCATCTGGGACAAATCAAAAGGACTCTGTCCCTGCTGCAACAGATCAAAAGAAGTCTGTTCCTGCTTCAATTGATGAAAAGGACTCCTCCCAGTTAGCAGCAGATAAAGAGAATTCTGCTCAAGCGGCAGAAGATACAGTTAATTCAGATCCACAAATGATCAATCAAGTTAGTCTTGCTCCACAAGATGCAGGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0030874 GO:0030875 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031497 GO:0031935 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0034622 GO:0034724 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044877 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060968 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0140110 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hira WD40

Protein Analysis

183

Amino Acids

19.91

Weight (kDa)

4.62

Isoelectric Point (pI)

49.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44530 AT3G44530 AT3G44530 AT3G44530
fragaria_vesca	FvH4_3g24580 FvH4_3g24580 FvH4_3g24580 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610
malus_domestica	MD00G1078300.v1.1 MD10G1043400.v1.1
prunus_persica	Prupe.8G049500_v2.0.a1 Prupe.8G049500_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1
pyrus_communis	pycom05g03110 pycom10g03040
rosa_chinensis	RchiOBHm_Chr1g0317731 RchiOBHm_Chr5g0044121
rosa_laevigata	RLG00000030587 RLG00000034243 RLG00000034244
rosa_multiflora	Rmu_sc0000939.1_g000028 Rmu_sc0001158.1_g000004
rosa_roxburghii	Rroxscaffold_1G00036920 Rroxscaffold_4G00330210
rosa_rugosa	Rorug01G0016900.1 Rorug05G0210500 Rorug05G0210600
rosa_samantha	Rh1AG029200 Rh1BG025400 Rh1CG026500 Rh1DG044000 Rh5AG294700 Rh5BG303400 Rh5CG330300 Rh5DG312200
rosa_wichuraiana	Rw0G013170 Rw0G019570 Rw5G027330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	530
AciI	CCGC	1 cut(s)	473
AclWI	GGATC	5 cut(s)	122, 143, 156, 261, 491
AcsI	RAATTY	2 cut(s)	245, 460
AfaI	GTAC	2 cut(s)	23, 228
AfeI	AGCGCT	1 cut(s)	277
AfiI	CCNNNNNNNGG	2 cut(s)	101, 145
AgsI	TTSAA	2 cut(s)	216, 417
AjiI	CACGTC	1 cut(s)	323
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	2 cut(s)	33, 335
AluI	AGCT	2 cut(s)	33, 335
Alw26I	GTCTC	2 cut(s)	63, 306
AlwI	GGATC	5 cut(s)	122, 143, 156, 261, 491
AlwNI	CAGNNNCTG	1 cut(s)	335
Aor51HI	AGCGCT	1 cut(s)	277
ApeKI	GCWGC	3 cut(s)	332, 383, 446
ApoI	RAATTY	2 cut(s)	245, 460
Asp700I	GAANNNNTTC	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	303
AvaII	GGWCC	1 cut(s)	92
BamHI	GGATCC	1 cut(s)	148
BbvI	GCAGC	3 cut(s)	344, 370, 458
BccI	CCATC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	140
BciVI	GTATCC	1 cut(s)	109
BclI	TGATCA	2 cut(s)	337, 507
BcoDI	GTCTC	2 cut(s)	63, 306
BfaI	CTAG	1 cut(s)	290
BfoI	RGCGCY	1 cut(s)	279
BfuAI	ACCTGC	1 cut(s)	530
BfuI	GTATCC	1 cut(s)	109
BisI	GCNGC	4 cut(s)	333, 384, 447, 474
BlsI	GCNGC	4 cut(s)	334, 385, 448, 475
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	1 cut(s)	92
BmgBI	CACGTC	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	140
BmrI	ACTGGG	2 cut(s)	111, 433
BmsI	GCATC	1 cut(s)	526
BmuI	ACTGGG	2 cut(s)	111, 433
BpmI	CTGGAG	1 cut(s)	13
BpuEI	CTTGAG	1 cut(s)	453
BsaI	GGTCTC	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 145
Bse1I	ACTGG	2 cut(s)	106, 439
Bse3DI	GCAATG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	101, 145
BseMI	GCAATG	1 cut(s)	213
BseNI	ACTGG	2 cut(s)	106, 439
BseRI	GAGGAG	2 cut(s)	16, 424
BseXI	GCAGC	3 cut(s)	344, 370, 458
BsiSI	CCGG	1 cut(s)	203
BslFI	GGGAC	2 cut(s)	362, 370
BslI	CCNNNNNNNGG	2 cut(s)	101, 145
BsmAI	GTCTC	2 cut(s)	63, 306
BsmFI	GGGAC	2 cut(s)	362, 370
Bso31I	GGTCTC	1 cut(s)	306
Bsp143I	GATC	7 cut(s)	127, 148, 253, 337, 391, 496, 507
BspACI	CCGC	1 cut(s)	473
BspLI	GGNNCC	1 cut(s)	150
BspMI	ACCTGC	1 cut(s)	530
BspPI	GGATC	5 cut(s)	122, 143, 156, 261, 491
BspTNI	GGTCTC	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	106, 439
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	7 cut(s)	127, 148, 253, 337, 391, 496, 507
BssT1I	CCWWGG	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	1 cut(s)	487
BstF5I	GGATG	1 cut(s)	111
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	7 cut(s)	130, 151, 256, 340, 394, 499, 510
BstMAI	GTCTC	2 cut(s)	63, 306
BstMBI	GATC	7 cut(s)	127, 148, 253, 337, 391, 496, 507
BstMWI	GCNNNNNNNGC	1 cut(s)	473
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	138
BstV1I	GCAGC	3 cut(s)	344, 370, 458
BstX2I	RGATCY	4 cut(s)	127, 148, 253, 496
BstYI	RGATCY	4 cut(s)	127, 148, 253, 496
BsuI	GTATCC	1 cut(s)	109
BtrI	CACGTC	1 cut(s)	323
BtsCI	GGATG	1 cut(s)	111
BveI	ACCTGC	1 cut(s)	530
CaiI	CAGNNNCTG	1 cut(s)	335
CfoI	GCGC	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	22, 227
CviAII	CATG	2 cut(s)	144, 250
CviJI	RGCY	4 cut(s)	5, 33, 212, 335
CviKI_1	RGCY	4 cut(s)	5, 33, 212, 335
CviQI	GTAC	2 cut(s)	22, 227
DpnI	GATC	7 cut(s)	129, 150, 255, 339, 393, 498, 509
DpnII	GATC	7 cut(s)	127, 148, 253, 337, 391, 496, 507
Eco130I	CCWWGG	1 cut(s)	88
Eco31I	GGTCTC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	92
Eco47III	AGCGCT	1 cut(s)	277
EcoRI	GAATTC	2 cut(s)	245, 460
EcoRII	CCWGG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	2 cut(s)	147, 253
FaiI	YATR	6 cut(s)	17, 145, 156, 177, 251, 270
FalI	AAGNNNNNCTT	4 cut(s)	183, 215, 507, 539
FaqI	GGGAC	2 cut(s)	362, 370
FatI	CATG	2 cut(s)	143, 249
FbaI	TGATCA	2 cut(s)	337, 507
Fnu4HI	GCNGC	4 cut(s)	333, 384, 447, 474
FokI	GGATG	1 cut(s)	118
Fsp4HI	GCNGC	4 cut(s)	333, 384, 447, 474
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	4 cut(s)	333, 384, 447, 474
GsuI	CTGGAG	1 cut(s)	13
HaeII	RGCGCY	1 cut(s)	279
HapII	CCGG	1 cut(s)	203
HhaI	GCGC	1 cut(s)	278
Hin1II	CATG	2 cut(s)	147, 253
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HinfI	GANTC	4 cut(s)	56, 347, 371, 431
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	1 cut(s)	303
Hpy166II	GTNNAC	2 cut(s)	10, 326
Hpy188I	TCNGA	2 cut(s)	265, 496
Hpy188III	TCNNGA	2 cut(s)	290, 546
Hpy8I	GTNNAC	2 cut(s)	10, 326
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	2 cut(s)	386, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	473
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	2 cut(s)	147, 253
HspAI	GCGC	1 cut(s)	276
Ksp22I	TGATCA	2 cut(s)	337, 507
Kzo9I	GATC	7 cut(s)	127, 148, 253, 337, 391, 496, 507
LmnI	GCTCC	1 cut(s)	532
Lsp1109I	GCAGC	3 cut(s)	344, 370, 458
LweI	GCATC	1 cut(s)	526
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	1 cut(s)	322
MalI	GATC	7 cut(s)	129, 150, 255, 339, 393, 498, 509
MboI	GATC	7 cut(s)	127, 148, 253, 337, 391, 496, 507
MboII	GAAGA	3 cut(s)	191, 203, 491
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	4 cut(s)	127, 148, 253, 496
MluCI	AATT	4 cut(s)	245, 417, 460, 490
MlyI	GAGTC	4 cut(s)	65, 341, 365, 425
MmeI	TCCRAC	1 cut(s)	122
MnlI	CCTC	5 cut(s)	37, 105, 106, 162, 445
MroXI	GAANNNNTTC	1 cut(s)	195
MseI	TTAA	2 cut(s)	240, 489
MspA1I	CMGCKG	1 cut(s)	335
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	140
MunI	CAATTG	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	473
NdeII	GATC	7 cut(s)	127, 148, 253, 337, 391, 496, 507
NlaIII	CATG	2 cut(s)	147, 253
NlaIV	GGNNCC	1 cut(s)	150
PdmI	GAANNNNTTC	1 cut(s)	195
PflFI	GACNNNGTC	1 cut(s)	374
PkrI	GCNGC	4 cut(s)	334, 385, 448, 475
PleI	GAGTC	4 cut(s)	64, 341, 365, 425
PpsI	GAGTC	4 cut(s)	64, 341, 365, 425
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	92
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	4 cut(s)	127, 148, 253, 496
PsyI	GACNNNGTC	1 cut(s)	374
PvuII	CAGCTG	1 cut(s)	335
RsaI	GTAC	2 cut(s)	23, 228
RsaNI	GTAC	2 cut(s)	22, 227
SaqAI	TTAA	2 cut(s)	240, 489
SatI	GCNGC	4 cut(s)	333, 384, 447, 474
Sau3AI	GATC	7 cut(s)	127, 148, 253, 337, 391, 496, 507
Sau96I	GGNCC	1 cut(s)	92
SchI	GAGTC	4 cut(s)	65, 341, 365, 425
ScrFI	CCNGG	1 cut(s)	140
SetI	ASST	7 cut(s)	35, 97, 141, 302, 325, 337, 544
SfaNI	GCATC	1 cut(s)	526
SinI	GGWCC	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	468
SmoI	CTYRAG	1 cut(s)	468
Sse9I	AATT	4 cut(s)	245, 417, 460, 490
SsiI	CCGC	1 cut(s)	473
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	487
TaiI	ACGT	1 cut(s)	325
TasI	AATT	4 cut(s)	245, 417, 460, 490
TatI	WGTACW	1 cut(s)	226
TauI	GCSGC	1 cut(s)	476
Tru1I	TTAA	2 cut(s)	240, 489
Tru9I	TTAA	2 cut(s)	240, 489
TseI	GCWGC	3 cut(s)	332, 383, 446
TspDTI	ATGAA	5 cut(s)	4, 238, 258, 285, 438
Tth111I	GACNNNGTC	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	92
XapI	RAATTY	2 cut(s)	245, 460
XbaI	TCTAGA	1 cut(s)	289
XmnI	GAANNNNTTC	1 cut(s)	195
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.