Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00589

Orthogroup ID

OG0001666

Physical Location & Seq

Genomic Coordinates Forward (+)

15 .. 6574

Gene Structure 6560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G013170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2409 bp

CTTGGATCTACCTTTTTCAGGCGTCTTGGATGGTCACCTTGTGGTCACTTCATTACTACTACTCATGGATTCCAGAAACCAAGGCATTCAGCACCTGTTCTTGAGAGGTTTAACCATTCAATGTTTATGAGGAAGTTTACCAATGCTCAGGAAGGGAAAACTGCACCTGTGGGGTGGACTAATGGGGCTTCGAAGACAGGAGGGAAAGAACCACAACCTTATAATGTTATTGCAATTGGAAGTCAGGACCGGACAATAACTGTATGGACGACCGCAAGCCCACGTCCTCTATTTGTTGCAAAGCATTTCTTTACTCAAAGTGTTGTGGATTTGTCCTGGAGCCCTGATGGTTATTCGCTCTTTGCATGTTCTTTGGATGGTTCGGTGGCTACTTTCCATTTTGAGGTGAAAGAACTTGGTCACCGGTTAAGCGATGCAGAACTAGATGAGTTGAAGAGAAATCGTTATGGTGATGTTAGAGGTCGGCAAGCAAACTTAGCTGAAAGCCCAGCACAGTTATTGCTTGAAGCAGCTTCTGCTAAGCAAGTGGCAAGCAAAAAGGTCTCTCTGGATGTTCAACAAAATCACACACTTGAGAAACCTTCTGCTCATGTGGGGGTTGCAACAAAAGCTTCTGAGACTCAGCTTGCTGATATGAAAAAGAGTGGAGGTGCTGCTCCTGATTGTTTAAATAAAGTTTCGATGGCTACCCGAATATCTGGTCCTGTGAAGCAAAGAGAATATAGACGCCCTGATGGTAGAAAAAGGATTACTCCAGAAGCAGTTGGGTCCCAAGCACTTGACTTCCCTCCCATGTCTTCTGATCATAGGAAGGATGATAATGGTTTAGTTGTTGCTGATAGTGGCATTAGAGAAACTTCTTTCAGGGGAACACTTGGCCGAAACACTGATACAAAGGAAAGATATGGGGCCACTGCCAGAGCTATGATTACTGAAAGTCTGGTTATTGAGAAGGTTCCTGCTTCCACAAGCAGAGATGAAAGCATAAACGTGGAACAAACAGGAAATGTGAAGGCGTGTAACTCAGTAGGCTCTAATAGTTCTATTCTTTCAATCCGGGTGTTCGATAAGAAAGAATGGGAAGACACAGTGCCAATTTGTTTGGAAGCTCGACCTTGGGAACAAGCTGCAAATGATGTGTTTGGCATGGGAAATACATTTATTACGAAAGAAACTGAAATCACTTGCACAAGGGGGTTGCAAACTCTTTGGTCTGATAGGATATCTGGGAAAGTCACTGTTTTAGCTGGAAATGTAAACTTTTGGGCTGTTGGCTGTGAAGATGGTTGCATACAGGTTTACACTAAGTGTGGGAGACGTGCTATGCCAACAATGATGGTAGGATCTGCTGCAATATTTATAGATTGTGATGAGTGCTGGAAGTTGTTTTTGGTCACAAAAAAAGGATCCTTGTATCTGTGGGATCTATTCACACGGAACTGTCTCCTTAATGACTCCTTGACATCTCTGGTTACTTCAAACCCAAACCCATCTGCAAAAGATGCAGGCATAATCAAAGTTATATCAGCAAAACTATCAAGATCTGGATCACCTATTGTTGTTCTTGCGACTCGTCATGCATTCCTCTTCGACATGGGCCTGATGTGTTGGCTTAGGGTTGCAGATGACTGCTTTCCTGGGTCAAATTTTGCAAGTTCTTGGAATTTAACTTCAACTCAGAGTGGCGAGCTGGCTGCATTGCAGGTTGATGTTAGGAAATATTTGGCCAGGAAGCCGGTTTGGAGCAGGGTGACTGATGACGGAGTACAGACACGTGCTCATTTGGAAGCTCAGTTGGCTTCTTCACTGGCTTTGAAGTCCCCTTCTGAATATCGCCAATGTCTCCTATCATACATACGCTTCCTTGCAAGAGAAGCAGATGAGTCCCGTTTGCGAGAAGTCTGTGAGAGTTTTCTTGGACCTCCTACTGGAATGATGGAAAATACATCTTTACATTCGAAGAACTTAGCATGGGATCCTTGTGTCCTTGGAATGAGGAAACATAAACTTTTACGAGAAGAAATTCTTCCAGCAATGGCTTCAAATAGGAAAGTACAAAGATTGCTTAATGAGTTCATGGATCTCATTTCCGAATATGAAAGTGTTGAAACAAATGTAGAGAAAAAATCTCACGCTTCACCAACAGAGAAAGCACCAGCAGCTGAATTAATGGACTCTTCCCCAACGGTGACAAATCAACTGAACTTGGTACCTGCACCAACAGATCAAATGAAGTCTGTTCATGCTTCAACTGATATAGTGGGCTCCTCCCAGGTAGCAGTAAATCAAGAAAATTCTGCTCCACTAGCTAGAGATAAATTTGATTCAGATCATCCACCACCAGTGATTGATCAAGTTAGTCTTACCTCACAAGATGCAGGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0030874 GO:0030875 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031497 GO:0031935 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0034622 GO:0034724 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044877 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060968 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0140110 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hira WD40

Protein Analysis

802

Amino Acids

88.14

Weight (kDa)

8.21

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_CAF1B_HIR1	PF24105	4 - 139	6.2e-08	CAF1B/HIR1 beta-propeller domain
Hira	PF07569	445 - 644	5.6e-50	TUP1-like enhancer of split

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44530 AT3G44530 AT3G44530 AT3G44530
fragaria_vesca	FvH4_3g24580 FvH4_3g24580 FvH4_3g24580 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610
malus_domestica	MD00G1078300.v1.1 MD10G1043400.v1.1
prunus_persica	Prupe.8G049500_v2.0.a1 Prupe.8G049500_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1
pyrus_communis	pycom05g03110 pycom10g03040
rosa_chinensis	RchiOBHm_Chr1g0317731 RchiOBHm_Chr5g0044121
rosa_laevigata	RLG00000030587 RLG00000034243 RLG00000034244
rosa_multiflora	Rmu_sc0000939.1_g000028 Rmu_sc0001158.1_g000004
rosa_roxburghii	Rroxscaffold_1G00036920 Rroxscaffold_4G00330210
rosa_rugosa	Rorug01G0016900.1 Rorug05G0210500 Rorug05G0210600
rosa_samantha	Rh1AG029200 Rh1BG025400 Rh1CG026500 Rh1DG044000 Rh5AG294700 Rh5BG303400 Rh5CG330300 Rh5DG312200
rosa_wichuraiana	Rw0G013170 Rw0G019570 Rw5G027330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	222
Acc36I	ACCTGC	3 cut(s)	1714, 2242, 2390
Acc65I	GGTACC	1 cut(s)	2230
AccB1I	GGYRCC	1 cut(s)	2230
AciI	CCGC	1 cut(s)	273
AclWI	GGATC	9 cut(s)	13, 1372, 1422, 1435, 1452, 1576, 1991, 2004, 2109
AcoI	YGGCCR	2 cut(s)	898, 1746
AcsI	RAATTY	5 cut(s)	1666, 1684, 2043, 2314, 2339
AcvI	CACGTG	1 cut(s)	1796
AcyI	GRCGYC	2 cut(s)	22, 748
AdeI	CACNNNGTG	2 cut(s)	41, 1329
AfaI	GTAC	3 cut(s)	1788, 2076, 2232
AfiI	CCNNNNNNNGG	3 cut(s)	18, 403, 1949
AflIII	ACRYGT	1 cut(s)	1793
AgeI	ACCGGT	1 cut(s)	423
AjiI	CACGTC	2 cut(s)	284, 1340
AjnI	CCWGG	4 cut(s)	335, 1657, 1748, 2292
AjuI	GAANNNNNNNTTGG	2 cut(s)	1394, 1426
Alw21I	GWGCWC	1 cut(s)	1801
Alw26I	GTCTC	5 cut(s)	568, 632, 1330, 1469, 1868
AlwI	GGATC	9 cut(s)	13, 1372, 1422, 1435, 1452, 1576, 1991, 2004, 2109
AlwNI	CAGNNNCTG	3 cut(s)	95, 536, 2183
AoxI	GGCC	4 cut(s)	898, 930, 1618, 1746
ApeKI	GCWGC	6 cut(s)	530, 674, 1148, 1370, 1715, 2180
ApoI	RAATTY	5 cut(s)	1666, 1684, 2043, 2314, 2339
ArsI	GACNNNNNNTTYG	2 cut(s)	706, 738
AseI	ATTAAT	1 cut(s)	2189
AsiGI	ACCGGT	1 cut(s)	423
Asp700I	GAANNNNTTC	2 cut(s)	2043, 2046
Asp718I	GGTACC	1 cut(s)	2230
AspS9I	GGNCC	6 cut(s)	247, 722, 789, 930, 1618, 1940
AsuC2I	CCSGG	1 cut(s)	1079
AsuHPI	GGTGA	8 cut(s)	27, 413, 418, 482, 1563, 1783, 2151, 2221
AsuII	TTCGAA	2 cut(s)	191, 1979
AvaII	GGWCC	4 cut(s)	247, 722, 789, 1940
BalI	TGGCCA	1 cut(s)	1748
BamHI	GGATCC	2 cut(s)	1427, 1996
BanI	GGYRCC	1 cut(s)	2230
BanII	GRGCYC	2 cut(s)	344, 2288
BbrPI	CACGTG	1 cut(s)	1796
BbsI	GAAGAC	3 cut(s)	200, 810, 1110
Bbv12I	GWGCWC	1 cut(s)	1801
BbvI	GCAGC	6 cut(s)	542, 661, 1135, 1357, 1702, 2192
BccI	CCATC	9 cut(s)	24, 341, 371, 697, 749, 1298, 1351, 1519, 1951
BcgI	CGANNNNNNTGC	2 cut(s)	1697, 1731
BciT130I	CCWGG	4 cut(s)	337, 1659, 1750, 2294
BclI	TGATCA	2 cut(s)	823, 2371
BcnI	CCSGG	1 cut(s)	1079
BcoDI	GTCTC	5 cut(s)	568, 632, 1330, 1469, 1868
BfaI	CTAG	3 cut(s)	443, 2327, 2331
BfuAI	ACCTGC	3 cut(s)	1714, 2242, 2390
BglII	AGATCT	1 cut(s)	1562
BisI	GCNGC	6 cut(s)	531, 675, 1149, 1371, 1716, 2181
BlpI	GCTNAGC	1 cut(s)	540
BlsI	GCNGC	6 cut(s)	532, 676, 1150, 1372, 1717, 2182
Bme1390I	CCNGG	5 cut(s)	337, 1079, 1659, 1750, 2294
Bme18I	GGWCC	4 cut(s)	247, 722, 789, 1940
BmgBI	CACGTC	2 cut(s)	284, 1340
BmgT120I	GGNCC	6 cut(s)	247, 722, 789, 930, 1618, 1940
BmiI	GGNNCC	9 cut(s)	341, 790, 791, 931, 978, 1429, 1998, 2232, 2287
BmrFI	CCNGG	5 cut(s)	337, 1079, 1659, 1750, 2294
BmsI	GCATC	3 cut(s)	424, 1513, 2386
BpiI	GAAGAC	3 cut(s)	200, 810, 1110
BpmI	CTGGAG	2 cut(s)	358, 759
Bpu10I	CCTNAGC	2 cut(s)	147, 1634
Bpu1102I	GCTNAGC	1 cut(s)	540
Bpu14I	TTCGAA	2 cut(s)	191, 1979
BpuEI	CTTGAG	2 cut(s)	122, 614
BpuMI	CCSGG	1 cut(s)	1079
BsaAI	YACGTR	1 cut(s)	1796
BsaBI	GATNNNNATC	2 cut(s)	1567, 2349
BsaHI	GRCGYC	2 cut(s)	22, 748
BsaI	GGTCTC	1 cut(s)	568
BsaJI	CCNNGG	5 cut(s)	80, 1136, 1658, 2008, 2292
BsaWI	WCCGGW	2 cut(s)	249, 423
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 403, 1949
Bse118I	RCCGGY	2 cut(s)	423, 1756
Bse1I	ACTGG	3 cut(s)	1833, 1954, 2363
Bse3DI	GCAATG	2 cut(s)	1718, 2061
Bse8I	GATNNNNATC	2 cut(s)	1567, 2349
BseBI	CCWGG	4 cut(s)	337, 1659, 1750, 2294
BseDI	CCNNGG	5 cut(s)	80, 1136, 1658, 2008, 2292
BseGI	GGATG	5 cut(s)	35, 382, 577, 841, 2353
BseJI	GATNNNNATC	2 cut(s)	1567, 2349
BseLI	CCNNNNNNNGG	3 cut(s)	18, 403, 1949
BseMI	GCAATG	2 cut(s)	1718, 2061
BseMII	CTCAG	6 cut(s)	161, 627, 656, 1059, 1712, 1826
BseNI	ACTGG	3 cut(s)	1833, 1954, 2363
BseRI	GAGGAG	1 cut(s)	2278
BseXI	GCAGC	6 cut(s)	542, 661, 1135, 1357, 1702, 2192
BseYI	CCCAGC	1 cut(s)	508
BsgI	GTGCAG	2 cut(s)	147, 2220
Bsh1285I	CGRYCG	1 cut(s)	273
BshFI	GGCC	4 cut(s)	900, 932, 1620, 1748
BshNI	GGYRCC	1 cut(s)	2230
BshTI	ACCGGT	1 cut(s)	423
BsiEI	CGRYCG	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	1801
BsiSI	CCGG	4 cut(s)	250, 424, 1078, 1757
BslFI	GGGAC	3 cut(s)	775, 1825, 1891
BslI	CCNNNNNNNGG	3 cut(s)	18, 403, 1949
BsmAI	GTCTC	5 cut(s)	568, 632, 1330, 1469, 1868
BsmBI	CGTCTC	1 cut(s)	1330
BsmFI	GGGAC	3 cut(s)	775, 1825, 1891
BsmI	GAATGC	2 cut(s)	85, 1601
BsnI	GGCC	4 cut(s)	900, 932, 1620, 1748
Bso31I	GGTCTC	1 cut(s)	568
Bsp119I	TTCGAA	2 cut(s)	191, 1979
Bsp1286I	GDGCHC	3 cut(s)	344, 1801, 2288
Bsp1720I	GCTNAGC	1 cut(s)	540
BspACI	CCGC	1 cut(s)	273
BspANI	GGCC	4 cut(s)	900, 932, 1620, 1748
BspCNI	CTCAG	6 cut(s)	160, 628, 655, 1058, 1711, 1825
BspLI	GGNNCC	9 cut(s)	341, 790, 791, 931, 978, 1429, 1998, 2232, 2287
BspMI	ACCTGC	3 cut(s)	1714, 2242, 2390
BspPI	GGATC	9 cut(s)	13, 1372, 1422, 1435, 1452, 1576, 1991, 2004, 2109
BspT104I	TTCGAA	2 cut(s)	191, 1979
BspT107I	GGYRCC	1 cut(s)	2230
BspTNI	GGTCTC	1 cut(s)	568
BsrDI	GCAATG	2 cut(s)	1718, 2061
BsrFI	RCCGGY	2 cut(s)	423, 1756
BsrI	ACTGG	3 cut(s)	1833, 1954, 2363
BssAI	RCCGGY	2 cut(s)	423, 1756
BssECI	CCNNGG	5 cut(s)	80, 1136, 1658, 2008, 2292
BssNI	GRCGYC	2 cut(s)	22, 748
BssT1I	CCWWGG	3 cut(s)	80, 1136, 2008
Bst2UI	CCWGG	4 cut(s)	337, 1659, 1750, 2294
Bst4CI	ACNGT	6 cut(s)	262, 516, 1111, 1261, 1463, 2209
Bst6I	CTCTTC	3 cut(s)	449, 1613, 2203
BstACI	GRCGYC	2 cut(s)	22, 748
BstAPI	GCANNNNNTGC	2 cut(s)	536, 1523
BstBAI	YACGTR	1 cut(s)	1796
BstBI	TTCGAA	2 cut(s)	191, 1979
BstC8I	GCNNGC	7 cut(s)	277, 489, 553, 648, 1528, 1709, 1713
BstEII	GGTNACC	2 cut(s)	33, 419
BstENI	CCTNNNNNAGG	1 cut(s)	16
BstF5I	GGATG	5 cut(s)	35, 382, 577, 841, 2353
BstMAI	GTCTC	5 cut(s)	568, 632, 1330, 1469, 1868
BstMCI	CGRYCG	1 cut(s)	273
BstMWI	GCNNNNNNNGC	8 cut(s)	497, 536, 629, 1523, 1817, 1895, 2180, 2327
BstNI	CCWGG	4 cut(s)	337, 1659, 1750, 2294
BstNSI	RCATGY	1 cut(s)	369
BstPI	GGTNACC	2 cut(s)	33, 419
BstSCI	CCNGG	5 cut(s)	335, 1077, 1657, 1748, 2292
BstV1I	GCAGC	6 cut(s)	542, 661, 1135, 1357, 1702, 2192
BstV2I	GAAGAC	3 cut(s)	200, 810, 1110
BstX2I	RGATCY	7 cut(s)	5, 1364, 1427, 1444, 1562, 1996, 2101
BstYI	RGATCY	7 cut(s)	5, 1364, 1427, 1444, 1562, 1996, 2101
BsuRI	GGCC	4 cut(s)	900, 932, 1620, 1748
BtgZI	GCGATG	1 cut(s)	447
BtrI	CACGTC	2 cut(s)	284, 1340
BtsCI	GGATG	5 cut(s)	35, 382, 577, 841, 2353
BtsI	GCAGTG	1 cut(s)	933
BtsIMutI	CAGTG	6 cut(s)	906, 933, 1116, 1257, 1826, 2370
BveI	ACCTGC	3 cut(s)	1714, 2242, 2390
Cac8I	GCNNGC	7 cut(s)	277, 489, 553, 648, 1528, 1709, 1713
CaiI	CAGNNNCTG	3 cut(s)	95, 536, 2183
Cfr10I	RCCGGY	2 cut(s)	423, 1756
Cfr13I	GGNCC	6 cut(s)	247, 722, 789, 930, 1618, 1940
CseI	GACGC	2 cut(s)	11, 756
Csp6I	GTAC	3 cut(s)	1787, 2075, 2231
CspAI	ACCGGT	1 cut(s)	423
CviQI	GTAC	3 cut(s)	1787, 2075, 2231
DraI	TTTAAA	1 cut(s)	690
DraIII	CACNNNGTG	2 cut(s)	41, 1329
EaeI	YGGCCR	2 cut(s)	898, 1746
Eam1104I	CTCTTC	3 cut(s)	449, 1613, 2203
EarI	CTCTTC	3 cut(s)	449, 1613, 2203
Eco130I	CCWWGG	3 cut(s)	80, 1136, 2008
Eco24I	GRGCYC	2 cut(s)	344, 2288
Eco31I	GGTCTC	1 cut(s)	568
Eco32I	GATATC	1 cut(s)	1245
Eco47I	GGWCC	4 cut(s)	247, 722, 789, 1940
Eco72I	CACGTG	1 cut(s)	1796
Eco91I	GGTNACC	2 cut(s)	33, 419
EcoNI	CCTNNNNNAGG	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	789
EcoO65I	GGTNACC	2 cut(s)	33, 419
EcoRII	CCWGG	4 cut(s)	335, 1657, 1748, 2292
EcoRV	GATATC	1 cut(s)	1245
EcoT14I	CCWWGG	3 cut(s)	80, 1136, 2008
EcoT22I	ATGCAT	1 cut(s)	1603
EcoT38I	GRGCYC	2 cut(s)	344, 2288
ErhI	CCWWGG	3 cut(s)	80, 1136, 2008
Esp3I	CGTCTC	1 cut(s)	1330
FalI	AAGNNNNNCTT	6 cut(s)	293, 325, 2031, 2063, 2367, 2399
FaqI	GGGAC	3 cut(s)	775, 1825, 1891
FbaI	TGATCA	2 cut(s)	823, 2371
Fnu4HI	GCNGC	6 cut(s)	531, 675, 1149, 1371, 1716, 2181
FokI	GGATG	5 cut(s)	42, 389, 584, 848, 2340
FriOI	GRGCYC	2 cut(s)	344, 2288
Fsp4HI	GCNGC	6 cut(s)	531, 675, 1149, 1371, 1716, 2181
FspBI	CTAG	3 cut(s)	443, 2327, 2331
GluI	GCNGC	6 cut(s)	531, 675, 1149, 1371, 1716, 2181
GsaI	CCCAGC	1 cut(s)	512
GsuI	CTGGAG	2 cut(s)	358, 759
HaeIII	GGCC	4 cut(s)	900, 932, 1620, 1748
HapII	CCGG	4 cut(s)	250, 424, 1078, 1757
HgaI	GACGC	2 cut(s)	11, 756
Hin1I	GRCGYC	2 cut(s)	22, 748
HindIII	AAGCTT	1 cut(s)	630
HinfI	GANTC	7 cut(s)	69, 640, 1475, 1591, 1904, 2195, 2345
HpaII	CCGG	4 cut(s)	250, 424, 1078, 1757
HphI	GGTGA	8 cut(s)	27, 413, 418, 482, 1563, 1783, 2151, 2221
Hpy166II	GTNNAC	4 cut(s)	138, 177, 1279, 1321
Hpy188I	TCNGA	7 cut(s)	637, 823, 1237, 1701, 1849, 2113, 2350
Hpy8I	GTNNAC	4 cut(s)	138, 177, 1279, 1321
HpyAV	CCTTC	6 cut(s)	146, 612, 826, 967, 1027, 1854
HpyCH4III	ACNGT	6 cut(s)	262, 516, 1111, 1261, 1463, 2209
HpyCH4IV	ACGT	4 cut(s)	283, 1011, 1339, 1795
HpyF10VI	GCNNNNNNNGC	8 cut(s)	497, 536, 629, 1523, 1817, 1895, 2180, 2327
HpySE526I	ACGT	4 cut(s)	283, 1011, 1339, 1795
Hsp92I	GRCGYC	2 cut(s)	22, 748
KflI	GGGWCCC	1 cut(s)	789
KpnI	GGTACC	1 cut(s)	2234
Ksp22I	TGATCA	2 cut(s)	823, 2371
LmnI	GCTCC	5 cut(s)	339, 682, 1764, 2291, 2326
Lsp1109I	GCAGC	6 cut(s)	542, 661, 1135, 1357, 1702, 2192
LweI	GCATC	3 cut(s)	424, 1513, 2386
MaeI	CTAG	3 cut(s)	443, 2327, 2331
MaeII	ACGT	4 cut(s)	283, 1011, 1339, 1795
MaeIII	GTNAC	9 cut(s)	33, 44, 419, 1040, 1255, 1414, 1492, 1771, 2209
MfeI	CAATTG	1 cut(s)	234
MflI	RGATCY	7 cut(s)	5, 1364, 1427, 1444, 1562, 1996, 2101
MhlI	GDGCHC	3 cut(s)	344, 1801, 2288
MlsI	TGGCCA	1 cut(s)	1748
MluCI	AATT	8 cut(s)	234, 1116, 1666, 1684, 2043, 2186, 2314, 2339
MluNI	TGGCCA	1 cut(s)	1748
MlyI	GAGTC	5 cut(s)	634, 1469, 1585, 1913, 2189
Mox20I	TGGCCA	1 cut(s)	1748
Mph1103I	ATGCAT	1 cut(s)	1603
MroXI	GAANNNNTTC	2 cut(s)	2043, 2046
MscI	TGGCCA	1 cut(s)	1748
MseI	TTAA	8 cut(s)	111, 428, 689, 1470, 1688, 2088, 2189, 2407
MslI	CAYNNNNRTG	1 cut(s)	1010
Msp20I	TGGCCA	1 cut(s)	1748
MspA1I	CMGCKG	1 cut(s)	2183
MspI	CCGG	4 cut(s)	250, 424, 1078, 1757
MspR9I	CCNGG	5 cut(s)	337, 1079, 1659, 1750, 2294
MunI	CAATTG	1 cut(s)	234
Mva1269I	GAATGC	2 cut(s)	85, 1601
MvaI	CCWGG	4 cut(s)	337, 1659, 1750, 2294
MwoI	GCNNNNNNNGC	8 cut(s)	497, 536, 629, 1523, 1817, 1895, 2180, 2327
NciI	CCSGG	1 cut(s)	1079
NlaIV	GGNNCC	9 cut(s)	341, 790, 791, 931, 978, 1429, 1998, 2232, 2287
NmuCI	GTSAC	7 cut(s)	33, 44, 419, 1255, 1414, 1771, 2209
NsiI	ATGCAT	1 cut(s)	1603
NspI	RCATGY	1 cut(s)	369
NspV	TTCGAA	2 cut(s)	191, 1979
PctI	GAATGC	2 cut(s)	85, 1601
PdmI	GAANNNNTTC	2 cut(s)	2043, 2046
PfeI	GAWTC	2 cut(s)	69, 2345
PfoI	TCCNGGA	1 cut(s)	335
PinAI	ACCGGT	1 cut(s)	423
PkrI	GCNGC	6 cut(s)	532, 676, 1150, 1372, 1717, 2182
PleI	GAGTC	5 cut(s)	634, 1469, 1585, 1912, 2189
PmaCI	CACGTG	1 cut(s)	1796
PmlI	CACGTG	1 cut(s)	1796
PpsI	GAGTC	5 cut(s)	634, 1469, 1585, 1912, 2189
Ppu21I	YACGTR	1 cut(s)	1796
PpuMI	RGGWCCY	1 cut(s)	789
PshBI	ATTAAT	1 cut(s)	2189
PsiI	TTATAA	1 cut(s)	222
Psp5II	RGGWCCY	1 cut(s)	789
Psp6I	CCWGG	4 cut(s)	335, 1657, 1748, 2292
PspCI	CACGTG	1 cut(s)	1796
PspEI	GGTNACC	2 cut(s)	33, 419
PspFI	CCCAGC	1 cut(s)	508
PspGI	CCWGG	4 cut(s)	335, 1657, 1748, 2292
PspN4I	GGNNCC	9 cut(s)	341, 790, 791, 931, 978, 1429, 1998, 2232, 2287
PspPI	GGNCC	6 cut(s)	247, 722, 789, 930, 1618, 1940
PspPPI	RGGWCCY	1 cut(s)	789
PstNI	CAGNNNCTG	3 cut(s)	95, 536, 2183
PsuI	RGATCY	7 cut(s)	5, 1364, 1427, 1444, 1562, 1996, 2101
PvuII	CAGCTG	1 cut(s)	2183
RsaI	GTAC	3 cut(s)	1788, 2076, 2232
RsaNI	GTAC	3 cut(s)	1787, 2075, 2231
RseI	CAYNNNNRTG	1 cut(s)	1010
SaqAI	TTAA	8 cut(s)	111, 428, 689, 1470, 1688, 2088, 2189, 2407
SatI	GCNGC	6 cut(s)	531, 675, 1149, 1371, 1716, 2181
Sau96I	GGNCC	6 cut(s)	247, 722, 789, 930, 1618, 1940
SchI	GAGTC	5 cut(s)	634, 1469, 1585, 1913, 2189
ScrFI	CCNGG	5 cut(s)	337, 1079, 1659, 1750, 2294
SduI	GDGCHC	3 cut(s)	344, 1801, 2288
SfaNI	GCATC	3 cut(s)	424, 1513, 2386
SfuI	TTCGAA	2 cut(s)	191, 1979
SinI	GGWCC	4 cut(s)	247, 722, 789, 1940
SmiMI	CAYNNNNRTG	1 cut(s)	1010
SmlI	CTYRAG	2 cut(s)	101, 593
SmoI	CTYRAG	2 cut(s)	101, 593
Sse9I	AATT	8 cut(s)	234, 1116, 1666, 1684, 2043, 2186, 2314, 2339
SsiI	CCGC	1 cut(s)	273
SspI	AATATT	2 cut(s)	1377, 1742
SspMI	CTAG	3 cut(s)	443, 2327, 2331
StyD4I	CCNGG	5 cut(s)	335, 1077, 1657, 1748, 2292
StyI	CCWWGG	3 cut(s)	80, 1136, 2008
TaaI	ACNGT	6 cut(s)	262, 516, 1111, 1261, 1463, 2209
TaiI	ACGT	4 cut(s)	286, 1014, 1342, 1798
TaqI	TCGA	6 cut(s)	191, 701, 1086, 1132, 1611, 1979
TasI	AATT	8 cut(s)	234, 1116, 1666, 1684, 2043, 2186, 2314, 2339
TatI	WGTACW	2 cut(s)	1786, 2074
TfiI	GAWTC	2 cut(s)	69, 2345
Tru1I	TTAA	8 cut(s)	111, 428, 689, 1470, 1688, 2088, 2189, 2407
Tru9I	TTAA	8 cut(s)	111, 428, 689, 1470, 1688, 2088, 2189, 2407
TscAI	CASTG	6 cut(s)	913, 940, 1116, 1264, 1833, 2370
TseFI	GTSAC	7 cut(s)	33, 44, 419, 1255, 1414, 1771, 2209
TseI	GCWGC	6 cut(s)	530, 674, 1148, 1370, 1715, 2180
Tsp45I	GTSAC	7 cut(s)	33, 44, 419, 1255, 1414, 1771, 2209
TspDTI	ATGAA	7 cut(s)	40, 671, 1014, 2086, 2133, 2252, 2267
TspGWI	ACGGA	2 cut(s)	1471, 1797
TspRI	CASTG	6 cut(s)	913, 940, 1116, 1264, 1833, 2370
VpaK11BI	GGWCC	4 cut(s)	247, 722, 789, 1940
VspI	ATTAAT	1 cut(s)	2189
XagI	CCTNNNNNAGG	1 cut(s)	16
XapI	RAATTY	5 cut(s)	1666, 1684, 2043, 2314, 2339
XceI	RCATGY	1 cut(s)	369
XmnI	GAANNNNTTC	2 cut(s)	2043, 2046
XspI	CTAG	3 cut(s)	443, 2327, 2331
Zsp2I	ATGCAT	1 cut(s)	1603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.