Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00880

Orthogroup ID

OG0001666

Physical Location & Seq

Genomic Coordinates Forward (+)

9471 .. 18418

Gene Structure 8948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G019570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3078 bp

ATGATTGCGGAGAAGCCCAGTTGGATTAAGCACGAAGGACTGCAGATATTCTCCATTGATGTTCAGCCCGGTGGGCTTAGGCTTGCCACCGGTGGGGGCGATCACAAGGTACGAATATGGAACATGAAATCTCTTGGCCGGGATATGGAAAATGAGGACTCAACTCAGAGGCTACTTGCAACCCTCCGTGATCACTTTGGATCTGATGATCAAGTGATTCTAATTCATGAGAGGAAGCCTGGTTCGGGAACCACTGAGTTTGGCAGTGGAGAGCCCCCTGACGTTGAGAATTGGAAAGTTATAATGACTTTGAGAGGGCATACTGCAGATGTGGTGGATCTTAATTGGTCTCCAGATGACTCGATGTTGGCCAGTGGAAGTTTAGATAATACCATACATATCTGGAATATGAGCAATGGTATTTGCACTGCTGTTCTTAGGGGTCACTCTAGCCTGGTTAAAGGAGTTACTTGGGATCCCATTGGCTCGTTCATAGCAAGTCAATCAGACGATAAGACAGTAATTATTTGGAAGACAAGCGACTGGAGTCTTGCTCACAGGACTGACGGTCACTGGGCAAAATCACTTGGATCTACCTTTTTCAGGCGTCTTGGATGGTCACCTTGTGGTCACTTCATTACTACTACTCATGGATTCCAGAAACCAAGGCATTCAGCACCTGTTCTTGAGAGAGGCGAATGGTCTGCCACATTTGACTTCCTAGGACATAATGCTCCTATAATCGTTGTGAAGTTTAACCATTCAATGTTTATGAGGAAGTTTACCAATGCTCAGGAAGGGAAAACTGCACCTGTGGGGTGGACTAATGGGGCTTCGAAGACAGGAGGGAAAGAACTACAACCTTATAATGTTATAGCAATCGGGAGTCAGGATCGTACAATAACTGTATGGACGACTGCAAGTCCCCGCCCTCTCTTTGTAGCAAAGCATTTCTTCACTCAAAGTGTTGTGGATTTGTCCTGGAGCCCCGATGGTTATTCACTTTTCGCATGTTCTTTGGATGGTTCAGTGGCTACTTTCCATTTTGAGGTGAAAGAGCTTGGCCACCGGTTAAGTGATGCTGAACTGGATGAATTAAAGAGAAGTCGTTATGGCGATGTTAGAGGTAGGCAGGTACATTTAGCTGAAAGCCCAGCACAGTTATTGCTTGAGGCAGCTTCTGCTAAGCAAGTGGCAAGCAAAAAGGTCTCTCTGGATGTTCAACAAAATCACACACTTGAGAAACCTTCTGCTCATGTGGGGGTTGCAACAAAAGCTTCTGAGACTCAGCTTGCTGATATGAAAAAGAGTGGAGGTGCTGCTCCTGATTGTTTAAATAAAGTTTCAATGCCTGCCCACATTTCTAGTCCTGTAAAGCAAAGAGAATATAGACGACCTGATGGTCGAAAGAGGATTATTCCAGAGGCAGTTGGTGTGCCTCTCCAGAAGGAAAATAATTCTGTTGGGGCTCAGTCCCAGGCACTTGACTTCCCTCTAATGCCTTCTGATCACAGAAAGAATGATAGTGGGTTAGTTGCTGATGATAGGGGGATTAAAGAAAATTCTGTCAGGGAAACACTTGGCCGAAACACTGATACAAAGGAAAGATATGGGGCCACTGCCAGAGCTATGATTACTGAAAGTCTGGTTATTGAGAAGGTTCCCACCTCCACAGGTAGAGATGAAAGCATAAACGTGGAACAAACAGGAAATGTGAAGGCGTGTAACTCAGTAGGCTCTAATAGTTCTATTCTTTCAATCCGGGTGTTCGATAAGAAAGAATGGGAAGACACAGTGCCAATTTGTTTGGAAGCTCGACCTTGGGAACAAGCTGCAAATGATGTGTTTGGCATGGGAAATACATTTATTACGAAAGAAACTGAAATCACTTGCACAAGGGGGTTGCAAACTCTTTGGTCTGATAGGATATCTGGGAAAGTCACTGTTTTAGCTGGAAATGTAAACTTTTGGGCTGTTGGCTGTGAAGATGGTTGCATACAGGTTTACACTAAGTGTGGGAGACGTGCTATGCCAACAATGATGGTAGGATCTGCTGCAATATTTATAGATTGTGATGAGTGCTGGAAGTTGTTTTTGGTCACAAAAAAAGGATCCTTGTATCTGTGGGATCTATTCACACGGAACTGTCTCCTTAATGACTCCTTGACATCTCTGGTTACTTCAAACCCAAACCCATCTGCAAAAGATGCAGGCATAATCAAAGTTATATCAGCAAAACTATCAAGATCTGGATCACCTATTGTTGTTCTTGCGACTCGTCATGCATTCCTCTTCGACATGGGCCTGATGTGTTGGCTTAGGGTTGCAGATGACTGCTTTCCTGGGTCAAATTTTGCAAGTTCTTGGAATTTAACTTCAACTCAGAGTGGCGAGCTGGCTGCATTGCAGGTTGATGTTAGGAAATATTTGGCCAGGAAGCCGGTTTGGAGCAGGGTGACTGATGACGGAGTACAGACACGTGCTCATTTGGAAGCTCAGTTGGCTTCTTCACTGGCTTTGAAGTCCCCTTCTGAATATCGCCAATGTCTCCTATCATACATACGCTTCCTTGCAAGAGAAGCAGATGAGTCCCGTTTGCGAGAAGTCTGTGAGAGTTTTCTTGGACCTCCTACTGGAATGATGGAAAATACATCTTTACATTCGAAGAACTTAGCATGGGATCCTTGTGTCCTTGTAAGTCCTACAGAAAAAATTCTTCCAGCAATGGCTTCAAATAGGAAAGTACAAAGATTGCTTAATGAGTTCATGGATCTCATTTCCGAATATGAAAGTGTTGAAACAAATGTAGAGAAAAAATCTCACGCTTCACCAACAGAGAAAGCACCAGCAGCTGAATTAATGGACTCTTCCCCAACGGTGACAAATCAACTGAACTTGGTACCTGCACCAACAGATCAAATGAAGTCTGTTCATGCTTCAACTGATATAGTGGGCTCCTCCCAGGTAGCAGTAAATCAAGAAAATTCTGCTCCACTAGCTAGAGATAAATTTGATTCAGATCATCCACCACCAGTGATTGATCAAGTTAGTCTTACCTCACAAGATGCAGGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0030874 GO:0030875 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031497 GO:0031935 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0034622 GO:0034724 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044877 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060968 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0140110 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hira WD40

Protein Analysis

1025

Amino Acids

112.67

Weight (kDa)

6.49

Isoelectric Point (pI)

36.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_CAF1B_HIR1	PF24105	11 - 354	2.1e-40	CAF1B/HIR1 beta-propeller domain
Beta-prop_EML_2	PF23414	18 - 184	1.3e-14	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	22 - 241	4.8e-18	WDHD1 first WD40 domain
WD40_Gbeta	PF25391	23 - 176	3e-11	G protein beta WD-40 repeat protein
Beta-prop_THOC3	PF25174	94 - 213	1e-19	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	94 - 194	4.9e-18	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	94 - 181	2e-14	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	94 - 178	9.7e-09	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5	PF25175	95 - 192	2e-20	WDR5 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	95 - 191	4.2e-06	TEP-1 second beta-propeller
WD40_CDC20-Fz	PF24807	96 - 245	2.4e-16	CDC20/Fizzy WD40 domain
WD40	PF00400	98 - 136	1.8e-10	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	98 - 193	1.2e-09	WDR3 second beta-propeller domain
Beta-prop_Aladin	PF25460	102 - 214	6.6e-09	Aladin seven-bladed propeller
WD40	PF00400	141 - 177	2.3e-06	WD domain, G-beta repeat
Hira	PF07569	673 - 872	8.5e-50	TUP1-like enhancer of split

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44530 AT3G44530 AT3G44530 AT3G44530
fragaria_vesca	FvH4_3g24580 FvH4_3g24580 FvH4_3g24580 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610
malus_domestica	MD00G1078300.v1.1 MD10G1043400.v1.1
prunus_persica	Prupe.8G049500_v2.0.a1 Prupe.8G049500_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1
pyrus_communis	pycom05g03110 pycom10g03040
rosa_chinensis	RchiOBHm_Chr1g0317731 RchiOBHm_Chr5g0044121
rosa_laevigata	RLG00000030587 RLG00000034243 RLG00000034244
rosa_multiflora	Rmu_sc0000939.1_g000028 Rmu_sc0001158.1_g000004
rosa_roxburghii	Rroxscaffold_1G00036920 Rroxscaffold_4G00330210
rosa_rugosa	Rorug01G0016900.1 Rorug05G0210500 Rorug05G0210600
rosa_samantha	Rh1AG029200 Rh1BG025400 Rh1CG026500 Rh1DG044000 Rh5AG294700 Rh5BG303400 Rh5CG330300 Rh5DG312200
rosa_wichuraiana	Rw0G013170 Rw0G019570 Rw5G027330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	302, 867
AasI	GACNNNNNNGTC	1 cut(s)	1401
Acc36I	ACCTGC	4 cut(s)	1123, 2398, 2911, 3059
Acc65I	GGTACC	1 cut(s)	2899
AccB1I	GGYRCC	1 cut(s)	2899
AciI	CCGC	2 cut(s)	8, 928
AcoI	YGGCCR	5 cut(s)	136, 369, 1063, 1582, 2430
AcsI	RAATTY	6 cut(s)	1561, 2350, 2368, 2712, 2983, 3008
AcvI	CACGTG	1 cut(s)	2480
AcyI	GRCGYC	1 cut(s)	607
AdeI	CACNNNGTG	2 cut(s)	626, 2013
AfaI	GTAC	6 cut(s)	111, 898, 1137, 2472, 2745, 2901
AfiI	CCNNNNNNNGG	6 cut(s)	93, 145, 245, 603, 1048, 2633
AflIII	ACRYGT	1 cut(s)	2477
AgeI	ACCGGT	2 cut(s)	89, 1068
AhdI	GACNNNNNGTC	2 cut(s)	567, 921
AjiI	CACGTC	1 cut(s)	2024
AjnI	CCWGG	7 cut(s)	238, 453, 980, 1476, 2341, 2432, 2961
AjuI	GAANNNNNNNTTGG	2 cut(s)	2078, 2110
AloI	GAACNNNNNNTCC	2 cut(s)	226, 258
Alw21I	GWGCWC	1 cut(s)	2485
Alw26I	GTCTC	6 cut(s)	354, 1213, 1277, 2014, 2153, 2552
AlwNI	CAGNNNCTG	3 cut(s)	680, 1181, 2852
AoxI	GGCC	7 cut(s)	136, 369, 1063, 1582, 1614, 2302, 2430
ApeKI	GCWGC	6 cut(s)	1175, 1319, 1832, 2054, 2399, 2849
ApoI	RAATTY	6 cut(s)	1561, 2350, 2368, 2712, 2983, 3008
AseI	ATTAAT	1 cut(s)	2858
AsiGI	ACCGGT	2 cut(s)	89, 1068
Asp700I	GAANNNNTTC	1 cut(s)	2712
Asp718I	GGTACC	1 cut(s)	2899
AspA2I	CCTAGG	1 cut(s)	721
AspS9I	GGNCC	3 cut(s)	1614, 2302, 2624
AsuC2I	CCSGG	3 cut(s)	69, 140, 1763
AsuHPI	GGTGA	6 cut(s)	612, 1063, 2247, 2467, 2820, 2890
AsuII	TTCGAA	2 cut(s)	836, 2663
AvaII	GGWCC	1 cut(s)	2624
AvrII	CCTAGG	1 cut(s)	721
BalI	TGGCCA	3 cut(s)	371, 1065, 2432
BamHI	GGATCC	3 cut(s)	475, 2111, 2680
BanI	GGYRCC	1 cut(s)	2899
BanII	GRGCYC	4 cut(s)	276, 989, 1471, 2957
BbrPI	CACGTG	1 cut(s)	2480
BbsI	GAAGAC	3 cut(s)	539, 845, 1794
Bbv12I	GWGCWC	1 cut(s)	2485
BbvI	GCAGC	6 cut(s)	1187, 1306, 1819, 2041, 2386, 2861
BccI	CCATC	8 cut(s)	609, 986, 1016, 1394, 1982, 2035, 2203, 2635
BcgI	CGANNNNNNTGC	4 cut(s)	686, 720, 2381, 2415
BciT130I	CCWGG	7 cut(s)	240, 455, 982, 1478, 2343, 2434, 2963
BclI	TGATCA	4 cut(s)	190, 208, 1507, 3040
BcnI	CCSGG	3 cut(s)	69, 140, 1763
BcoDI	GTCTC	6 cut(s)	354, 1213, 1277, 2014, 2153, 2552
BfaI	CTAG	5 cut(s)	450, 722, 1365, 2996, 3000
BfmI	CTRYAG	3 cut(s)	41, 324, 2703
BfuAI	ACCTGC	4 cut(s)	1123, 2398, 2911, 3059
BglI	GCCNNNNNGGC	1 cut(s)	73
BglII	AGATCT	1 cut(s)	2246
BisI	GCNGC	6 cut(s)	1176, 1320, 1833, 2055, 2400, 2850
BlnI	CCTAGG	1 cut(s)	721
BlpI	GCTNAGC	1 cut(s)	1185
BlsI	GCNGC	6 cut(s)	1177, 1321, 1834, 2056, 2401, 2851
Bme18I	GGWCC	1 cut(s)	2624
BmeRI	GACNNNNNGTC	2 cut(s)	567, 921
BmgBI	CACGTC	1 cut(s)	2024
BmgT120I	GGNCC	3 cut(s)	1614, 2302, 2624
BmiI	GGNNCC	9 cut(s)	250, 477, 986, 1615, 1662, 2113, 2682, 2901, 2956
BmrI	ACTGGG	2 cut(s)	12, 583
BmsI	GCATC	3 cut(s)	1069, 2197, 3055
BmuI	ACTGGG	2 cut(s)	12, 583
BoxI	GACNNNNGTC	1 cut(s)	546
BpiI	GAAGAC	3 cut(s)	539, 845, 1794
BplI	GAGNNNNNCTC	2 cut(s)	538, 570
BpmI	CTGGAG	4 cut(s)	336, 565, 1003, 1427
Bpu10I	CCTNAGC	3 cut(s)	77, 792, 2318
Bpu1102I	GCTNAGC	1 cut(s)	1185
Bpu14I	TTCGAA	2 cut(s)	836, 2663
BpuEI	CTTGAG	3 cut(s)	707, 1190, 1259
BpuMI	CCSGG	3 cut(s)	69, 140, 1763
BsaAI	YACGTR	1 cut(s)	2480
BsaBI	GATNNNNATC	2 cut(s)	2251, 3018
BsaHI	GRCGYC	1 cut(s)	607
BsaI	GGTCTC	2 cut(s)	354, 1213
BsaJI	CCNNGG	6 cut(s)	665, 721, 1476, 1820, 2342, 2961
BsaWI	WCCGGW	2 cut(s)	89, 1068
Bsc4I	CCNNNNNNNGG	6 cut(s)	93, 145, 245, 603, 1048, 2633
Bse118I	RCCGGY	3 cut(s)	89, 1068, 2440
Bse1I	ACTGG	8 cut(s)	18, 372, 548, 578, 1092, 2517, 2638, 3032
Bse3DI	GCAATG	3 cut(s)	421, 2402, 2730
Bse8I	GATNNNNATC	2 cut(s)	2251, 3018
BseBI	CCWGG	7 cut(s)	240, 455, 982, 1478, 2343, 2434, 2963
BseDI	CCNNGG	6 cut(s)	665, 721, 1476, 1820, 2342, 2961
BseGI	GGATG	5 cut(s)	620, 1027, 1096, 1222, 3022
BseJI	GATNNNNATC	2 cut(s)	2251, 3018
BseLI	CCNNNNNNNGG	6 cut(s)	93, 145, 245, 603, 1048, 2633
BseMI	GCAATG	3 cut(s)	421, 2402, 2730
BseMII	CTCAG	9 cut(s)	179, 246, 806, 1272, 1301, 1484, 1743, 2396, 2510
BseNI	ACTGG	8 cut(s)	18, 372, 548, 578, 1092, 2517, 2638, 3032
BseRI	GAGGAG	1 cut(s)	2947
BseXI	GCAGC	6 cut(s)	1187, 1306, 1819, 2041, 2386, 2861
BseYI	CCCAGC	1 cut(s)	1153
BsgI	GTGCAG	2 cut(s)	792, 2889
BshFI	GGCC	7 cut(s)	138, 371, 1065, 1584, 1616, 2304, 2432
BshNI	GGYRCC	1 cut(s)	2899
BshTI	ACCGGT	2 cut(s)	89, 1068
BsiHKAI	GWGCWC	1 cut(s)	2485
BsiSI	CCGG	6 cut(s)	69, 90, 139, 1069, 1762, 2441
BslFI	GGGAC	4 cut(s)	909, 1459, 2509, 2575
BslI	CCNNNNNNNGG	6 cut(s)	93, 145, 245, 603, 1048, 2633
BsmAI	GTCTC	6 cut(s)	354, 1213, 1277, 2014, 2153, 2552
BsmBI	CGTCTC	1 cut(s)	2014
BsmFI	GGGAC	4 cut(s)	909, 1459, 2509, 2575
BsmI	GAATGC	2 cut(s)	670, 2285
BsnI	GGCC	7 cut(s)	138, 371, 1065, 1584, 1616, 2304, 2432
Bso31I	GGTCTC	2 cut(s)	354, 1213
Bsp119I	TTCGAA	2 cut(s)	836, 2663
Bsp1286I	GDGCHC	5 cut(s)	276, 989, 1471, 2485, 2957
Bsp1720I	GCTNAGC	1 cut(s)	1185
BspACI	CCGC	2 cut(s)	8, 928
BspANI	GGCC	7 cut(s)	138, 371, 1065, 1584, 1616, 2304, 2432
BspCNI	CTCAG	9 cut(s)	178, 247, 805, 1273, 1300, 1483, 1742, 2395, 2509
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	9 cut(s)	250, 477, 986, 1615, 1662, 2113, 2682, 2901, 2956
BspMAI	CTGCAG	2 cut(s)	45, 328
BspMI	ACCTGC	4 cut(s)	1123, 2398, 2911, 3059
BspT104I	TTCGAA	2 cut(s)	836, 2663
BspT107I	GGYRCC	1 cut(s)	2899
BspTNI	GGTCTC	2 cut(s)	354, 1213
BsrDI	GCAATG	3 cut(s)	421, 2402, 2730
BsrFI	RCCGGY	3 cut(s)	89, 1068, 2440
BsrI	ACTGG	8 cut(s)	18, 372, 548, 578, 1092, 2517, 2638, 3032
BssAI	RCCGGY	3 cut(s)	89, 1068, 2440
BssECI	CCNNGG	6 cut(s)	665, 721, 1476, 1820, 2342, 2961
BssNI	GRCGYC	1 cut(s)	607
BssT1I	CCWWGG	3 cut(s)	665, 721, 1820
Bst2UI	CCWGG	7 cut(s)	240, 455, 982, 1478, 2343, 2434, 2963
Bst4CI	ACNGT	8 cut(s)	520, 569, 907, 1161, 1795, 1945, 2147, 2878
Bst6I	CTCTTC	2 cut(s)	2297, 2872
BstACI	GRCGYC	1 cut(s)	607
BstAPI	GCANNNNNTGC	2 cut(s)	1181, 2207
BstBAI	YACGTR	1 cut(s)	2480
BstBI	TTCGAA	2 cut(s)	836, 2663
BstC8I	GCNNGC	7 cut(s)	84, 1198, 1293, 1353, 2212, 2393, 2397
BstEII	GGTNACC	1 cut(s)	618
BstENI	CCTNNNNNAGG	1 cut(s)	601
BstF5I	GGATG	5 cut(s)	620, 1027, 1096, 1222, 3022
BstMAI	GTCTC	6 cut(s)	354, 1213, 1277, 2014, 2153, 2552
BstMWI	GCNNNNNNNGC	8 cut(s)	73, 1181, 1274, 2207, 2501, 2579, 2849, 2996
BstNI	CCWGG	7 cut(s)	240, 455, 982, 1478, 2343, 2434, 2963
BstNSI	RCATGY	1 cut(s)	1014
BstPAI	GACNNNNGTC	1 cut(s)	546
BstPI	GGTNACC	1 cut(s)	618
BstSFI	CTRYAG	3 cut(s)	41, 324, 2703
BstV1I	GCAGC	6 cut(s)	1187, 1306, 1819, 2041, 2386, 2861
BstV2I	GAAGAC	3 cut(s)	539, 845, 1794
BsuRI	GGCC	7 cut(s)	138, 371, 1065, 1584, 1616, 2304, 2432
BtgZI	GCGATG	1 cut(s)	1131
BtrI	CACGTC	1 cut(s)	2024
BtsCI	GGATG	5 cut(s)	620, 1027, 1096, 1222, 3022
BtsI	GCAGTG	3 cut(s)	271, 426, 1617
BveI	ACCTGC	4 cut(s)	1123, 2398, 2911, 3059
Cac8I	GCNNGC	7 cut(s)	84, 1198, 1293, 1353, 2212, 2393, 2397
CaiI	CAGNNNCTG	3 cut(s)	680, 1181, 2852
CciI	TCATGA	1 cut(s)	226
Cfr10I	RCCGGY	3 cut(s)	89, 1068, 2440
Cfr13I	GGNCC	3 cut(s)	1614, 2302, 2624
CseI	GACGC	1 cut(s)	596
Csp6I	GTAC	6 cut(s)	110, 897, 1136, 2471, 2744, 2900
CspAI	ACCGGT	2 cut(s)	89, 1068
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviQI	GTAC	6 cut(s)	110, 897, 1136, 2471, 2744, 2900
DraI	TTTAAA	1 cut(s)	1335
DraIII	CACNNNGTG	2 cut(s)	626, 2013
DrdI	GACNNNNNNGTC	1 cut(s)	1401
DriI	GACNNNNNGTC	2 cut(s)	567, 921
DseDI	GACNNNNNNGTC	1 cut(s)	1401
EaeI	YGGCCR	5 cut(s)	136, 369, 1063, 1582, 2430
Eam1104I	CTCTTC	2 cut(s)	2297, 2872
Eam1105I	GACNNNNNGTC	2 cut(s)	567, 921
EarI	CTCTTC	2 cut(s)	2297, 2872
Eco130I	CCWWGG	3 cut(s)	665, 721, 1820
Eco24I	GRGCYC	4 cut(s)	276, 989, 1471, 2957
Eco31I	GGTCTC	2 cut(s)	354, 1213
Eco32I	GATATC	1 cut(s)	1929
Eco47I	GGWCC	1 cut(s)	2624
Eco72I	CACGTG	1 cut(s)	2480
Eco91I	GGTNACC	1 cut(s)	618
EcoNI	CCTNNNNNAGG	1 cut(s)	601
EcoO65I	GGTNACC	1 cut(s)	618
EcoRII	CCWGG	7 cut(s)	238, 453, 980, 1476, 2341, 2432, 2961
EcoRV	GATATC	1 cut(s)	1929
EcoT14I	CCWWGG	3 cut(s)	665, 721, 1820
EcoT22I	ATGCAT	1 cut(s)	2287
EcoT38I	GRGCYC	4 cut(s)	276, 989, 1471, 2957
ErhI	CCWWGG	3 cut(s)	665, 721, 1820
Esp3I	CGTCTC	1 cut(s)	2014
FalI	AAGNNNNNCTT	4 cut(s)	938, 970, 3036, 3068
FaqI	GGGAC	4 cut(s)	909, 1459, 2509, 2575
FauI	CCCGC	1 cut(s)	935
FbaI	TGATCA	4 cut(s)	190, 208, 1507, 3040
Fnu4HI	GCNGC	6 cut(s)	1176, 1320, 1833, 2055, 2400, 2850
FokI	GGATG	5 cut(s)	627, 1034, 1103, 1229, 3009
FriOI	GRGCYC	4 cut(s)	276, 989, 1471, 2957
Fsp4HI	GCNGC	6 cut(s)	1176, 1320, 1833, 2055, 2400, 2850
FspBI	CTAG	5 cut(s)	450, 722, 1365, 2996, 3000
GluI	GCNGC	6 cut(s)	1176, 1320, 1833, 2055, 2400, 2850
GsaI	CCCAGC	1 cut(s)	1157
GsuI	CTGGAG	4 cut(s)	336, 565, 1003, 1427
HaeIII	GGCC	7 cut(s)	138, 371, 1065, 1584, 1616, 2304, 2432
HapII	CCGG	6 cut(s)	69, 90, 139, 1069, 1762, 2441
HgaI	GACGC	1 cut(s)	596
Hin1I	GRCGYC	1 cut(s)	607
HindIII	AAGCTT	1 cut(s)	1275
HpaII	CCGG	6 cut(s)	69, 90, 139, 1069, 1762, 2441
HphI	GGTGA	6 cut(s)	612, 1063, 2247, 2467, 2820, 2890
Hpy166II	GTNNAC	4 cut(s)	783, 822, 1963, 2005
Hpy8I	GTNNAC	4 cut(s)	783, 822, 1963, 2005
HpyAV	CCTTC	8 cut(s)	29, 791, 1257, 1441, 1512, 1651, 1711, 2538
HpyCH4III	ACNGT	8 cut(s)	520, 569, 907, 1161, 1795, 1945, 2147, 2878
HpyCH4IV	ACGT	4 cut(s)	282, 1695, 2023, 2479
HpyF10VI	GCNNNNNNNGC	8 cut(s)	73, 1181, 1274, 2207, 2501, 2579, 2849, 2996
HpySE526I	ACGT	4 cut(s)	282, 1695, 2023, 2479
Hsp92I	GRCGYC	1 cut(s)	607
KpnI	GGTACC	1 cut(s)	2903
Ksp22I	TGATCA	4 cut(s)	190, 208, 1507, 3040
LmnI	GCTCC	6 cut(s)	739, 984, 1327, 2448, 2960, 2995
Lsp1109I	GCAGC	6 cut(s)	1187, 1306, 1819, 2041, 2386, 2861
LweI	GCATC	3 cut(s)	1069, 2197, 3055
MaeI	CTAG	5 cut(s)	450, 722, 1365, 2996, 3000
MaeII	ACGT	4 cut(s)	282, 1695, 2023, 2479
MhlI	GDGCHC	5 cut(s)	276, 989, 1471, 2485, 2957
MlsI	TGGCCA	3 cut(s)	371, 1065, 2432
MluNI	TGGCCA	3 cut(s)	371, 1065, 2432
MlyI	GAGTC	9 cut(s)	152, 353, 556, 895, 1279, 2153, 2269, 2597, 2858
Mox20I	TGGCCA	3 cut(s)	371, 1065, 2432
Mph1103I	ATGCAT	1 cut(s)	2287
MroXI	GAANNNNTTC	1 cut(s)	2712
MscI	TGGCCA	3 cut(s)	371, 1065, 2432
MslI	CAYNNNNRTG	1 cut(s)	1694
Msp20I	TGGCCA	3 cut(s)	371, 1065, 2432
MspA1I	CMGCKG	1 cut(s)	2852
MspI	CCGG	6 cut(s)	69, 90, 139, 1069, 1762, 2441
Mva1269I	GAATGC	2 cut(s)	670, 2285
MvaI	CCWGG	7 cut(s)	240, 455, 982, 1478, 2343, 2434, 2963
MwoI	GCNNNNNNNGC	8 cut(s)	73, 1181, 1274, 2207, 2501, 2579, 2849, 2996
NciI	CCSGG	3 cut(s)	69, 140, 1763
NlaIV	GGNNCC	9 cut(s)	250, 477, 986, 1615, 1662, 2113, 2682, 2901, 2956
NmuCI	GTSAC	8 cut(s)	443, 569, 618, 629, 1939, 2098, 2455, 2878
NsiI	ATGCAT	1 cut(s)	2287
NspI	RCATGY	1 cut(s)	1014
NspV	TTCGAA	2 cut(s)	836, 2663
PagI	TCATGA	1 cut(s)	226
PctI	GAATGC	2 cut(s)	670, 2285
PdmI	GAANNNNTTC	1 cut(s)	2712
PfeI	GAWTC	3 cut(s)	217, 654, 3014
PfoI	TCCNGGA	1 cut(s)	980
PinAI	ACCGGT	2 cut(s)	89, 1068
PkrI	GCNGC	6 cut(s)	1177, 1321, 1834, 2056, 2401, 2851
PleI	GAGTC	9 cut(s)	152, 353, 555, 894, 1279, 2153, 2269, 2596, 2858
PmaCI	CACGTG	1 cut(s)	2480
PmlI	CACGTG	1 cut(s)	2480
PpsI	GAGTC	9 cut(s)	152, 353, 555, 894, 1279, 2153, 2269, 2596, 2858
Ppu21I	YACGTR	1 cut(s)	2480
PshAI	GACNNNNGTC	1 cut(s)	546
PshBI	ATTAAT	1 cut(s)	2858
PsiI	TTATAA	2 cut(s)	302, 867
Psp6I	CCWGG	7 cut(s)	238, 453, 980, 1476, 2341, 2432, 2961
PspCI	CACGTG	1 cut(s)	2480
PspEI	GGTNACC	1 cut(s)	618
PspFI	CCCAGC	1 cut(s)	1153
PspGI	CCWGG	7 cut(s)	238, 453, 980, 1476, 2341, 2432, 2961
PspN4I	GGNNCC	9 cut(s)	250, 477, 986, 1615, 1662, 2113, 2682, 2901, 2956
PspPI	GGNCC	3 cut(s)	1614, 2302, 2624
PstI	CTGCAG	2 cut(s)	45, 328
PstNI	CAGNNNCTG	3 cut(s)	680, 1181, 2852
PvuII	CAGCTG	1 cut(s)	2852
RsaI	GTAC	6 cut(s)	111, 898, 1137, 2472, 2745, 2901
RsaNI	GTAC	6 cut(s)	110, 897, 1136, 2471, 2744, 2900
RseI	CAYNNNNRTG	1 cut(s)	1694
SatI	GCNGC	6 cut(s)	1176, 1320, 1833, 2055, 2400, 2850
Sau96I	GGNCC	3 cut(s)	1614, 2302, 2624
SchI	GAGTC	9 cut(s)	152, 353, 556, 895, 1279, 2153, 2269, 2597, 2858
SduI	GDGCHC	5 cut(s)	276, 989, 1471, 2485, 2957
SfaNI	GCATC	3 cut(s)	1069, 2197, 3055
SfcI	CTRYAG	3 cut(s)	41, 324, 2703
SfuI	TTCGAA	2 cut(s)	836, 2663
SgrAI	CRCCGGYG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	2624
SmiMI	CAYNNNNRTG	1 cut(s)	1694
SmlI	CTYRAG	3 cut(s)	686, 1169, 1238
SmoI	CTYRAG	3 cut(s)	686, 1169, 1238
SsiI	CCGC	2 cut(s)	8, 928
SspI	AATATT	2 cut(s)	2061, 2426
SspMI	CTAG	5 cut(s)	450, 722, 1365, 2996, 3000
StyI	CCWWGG	3 cut(s)	665, 721, 1820
TaaI	ACNGT	8 cut(s)	520, 569, 907, 1161, 1795, 1945, 2147, 2878
TaiI	ACGT	4 cut(s)	285, 1698, 2026, 2482
TaqI	TCGA	7 cut(s)	362, 836, 1405, 1770, 1816, 2295, 2663
TatI	WGTACW	2 cut(s)	2470, 2743
TfiI	GAWTC	3 cut(s)	217, 654, 3014
TseFI	GTSAC	8 cut(s)	443, 569, 618, 629, 1939, 2098, 2455, 2878
TseI	GCWGC	6 cut(s)	1175, 1319, 1832, 2054, 2399, 2849
Tsp45I	GTSAC	8 cut(s)	443, 569, 618, 629, 1939, 2098, 2455, 2878
TspGWI	ACGGA	3 cut(s)	176, 2155, 2481
VpaK11BI	GGWCC	1 cut(s)	2624
VspI	ATTAAT	1 cut(s)	2858
XagI	CCTNNNNNAGG	1 cut(s)	601
XapI	RAATTY	6 cut(s)	1561, 2350, 2368, 2712, 2983, 3008
XceI	RCATGY	1 cut(s)	1014
XmaJI	CCTAGG	1 cut(s)	721
XmnI	GAANNNNTTC	1 cut(s)	2712
XspI	CTAG	5 cut(s)	450, 722, 1365, 2996, 3000
Zsp2I	ATGCAT	1 cut(s)	2287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.