Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001666

Physical Location & Seq

Genomic Coordinates Reverse (-)

5213188 .. 5220119

Gene Structure 6932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG026500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2670 bp

ATGATTGCAGAAAAGCCCAGTTGGATTAGGCATGAGGGTTTGCAAATTTTCTCCATTGATGTTCAGCCTGGTGGACTTAGGGTTGCCACTGGTGGGGGTGACCACAAGGTGCGGGTATGGAACATGAAATCCCTGGGCAGGGATTTCTCAAATGAAGAATCAGCCCAAAGGCTACTTGCAACCCTCCGTGATCACTTCGGTTCTGTGAATTGTGTTAGGTGGGCTAAGCATGGTCGCTATCTTGCATCAGGATCTGATGATCAAGTAATTCTAATTCATGAGAGGAAGCCAGGTTCAGGAACCACTGAGTTTGGCAGTGGAGAGCCCCCTGATGTCGAGAATTGGAAAGTTGCAATGACTTTGAGAGGGCATACTGCAGATGTGGTGGATCTCAATTGGTCTCCAGATGACTCGATGCTGGCCAGCGGAAGTTTAGATAACACTATACACATCTGGAATATGAGCAATGGTATTTGCACTGCTGTTCTTAGGGGCCATTCTAGCTTGGTTAAAGGAGTTACTTGGGATCCGATTGGCTCCTTCATAGCAAGTCAATCAGATGATAAGACTGTAATTATTTGGCGAACAAGTGACTGGAGTCTTGCTCACAAAACAGACGGCCACTGGGCAAAATCACTTGGATCTACCTTTTTCAGGCGGCTTGGATGGTCCCCTTGTGGTCATTTCATTACTACCACTCATGGGTTCCAGAAACCAAGGCATTCAGCACCTGTTCTAGAGAGAGGGGAATGGTCTGCTACTTTTGACTTCTTAGGACATAATGCACCTGTGATTGTGGTGAAGTTTAACCACTCAATGTTTAAGAGGAATTTTTCCAATGCTCAAGAAGGGAAAGCTGCACCTGTTGGGTGGACCAATGGCACCTCAAAAATAGGTGGGAAAGAAAAAGAACTACAACCTTATAATGTTATAGCAATCGGGAGTCAGGATCGTACAATAACTGTATGGACGACTGCAAGTCCCCGCCCTCTCTTTGTAGCAAAGCATTTCTTCACTCAAAGTGTTGTGGATTTATCTTGGAGCCCCGATGGTTATTCACTTTTCGCATGTTCTTTGGATGGTTCAGTGGCTACTTTCCATTTTGAGGTGAAAGAGCTTGGCCACCGGTTAAGTGATGCTGAACTGGATGAATTAAAGAGAAGTCGTTATGGCGATGTTAGAGGTAGGCAGGTACATTTAGCTGAAAGCCCAGCACAGTTATTGCTTGAGGCAGCTTCTGCTAAGCAAGCCCCAAAGAAAAAAGTGGTTCGGGATGTTCAGCAAAGCCAGACAGTCAAACCTTCTGCGGGTGTGGTGGTTGCAACAAAAGCATCTGATGGTCACGTTGATGATAGGAAGAAGAGTGGAGGAGCTTCTGGTGATGTTTTAAATAAAGTTTCAATGCCTGCCCACATTTCTAGTCCTGTAAAGCAAAGAGAATATAGACGACCTGATGGTCGAAAGAGGATTATTCCAGAGGCAGTTGGTGTGCCTCTCCAGAAGGAAAATAATTCTGTTGGGGCTCAGTCCCAGGCACTTGACTTCCCTCTAATGCCTTCTGATCACAGAAAGAATGATAGTGGGTTAGTTGCTGATGATAGGGGGATTAAAGAAAATTCTGTCAGGGAAACACTTATGAGAGGCAATGATATAAAGGACGGACAGGGGGTCACCGCTAGAGCTATGATTACCAACAGCCTTGTTATTGAGAAGGTTCCCACCTCCACAGGTAGAGATGAAAGCATAAATATAGAACAGTCAGGAACTGTCAAGGCTTCTAATTCAATATGTGGTTCTAGTCCTATTCTTTCAATTAGGGTGTTTGATAAGAAGGAAGCGGAAGATGCTGTACCATATTGCTTGGAAGCTCGGCCTAAGGAACATGCTGCAAATGACATTATTAACGTGGGAAATTCACTGATCATAAAAGAAACCGAAATCACCTGCACAAAAGGGTTGCAAACACTTTGGTCTGATAGAATATCTGGGAAAGTCACTGTTTTAGCTGGAAATGCAAACTTTTGGGCTGTTGGATGTGAAGATGGATGCATCCAGGTTTACACAAAGTGTGGGAGACGCGCTATGCCGACTATGATGGTAGGATCTGCAGCAGTTTTTATAGATTGTGACGAGTGCTGGAAGTTGTTTTTGGTTACCAGAAAAGGATCCTTGTATCTATGGGATCTATTAAAGCGGAACTGTCTCCTTCATGACTCGTTGTCATCTCTGGTTGCTTTAAACCCAAATCCATCTGCAAATGATGCAGGCATGATCAAAGTTATATCAGCAAAGCTATCAAGATCTGGATCTCCCCTTGTTGTTCTCGCTACTCGCCATGCCTTCCTTTTTGACATGGGACTGATGTGTTGGCTTAGGGTTGCAGATGACTGCTTTTCTGGGTCAAATTTTGCAAGCTCCTGGCATTTGGGTTTGACGCAGAGCGGTGAGCTGGCTGGTTTGCAGGTTGATGTTAAGAAATATTTGGCTAGGAAGCCAGGTTGGAGCAGGGTGACTGACGATGGAGTACAGACACGTGCTCATTTGGAAGCTCAGCTGGCTTCTTTGCTGGCTTTAAAGTCCCCTAATGAATATCGCCAATGCCTTCTATCATATATACGCTTCCTTGCCAGGTGTTTATCTTTTTTCTTCCTTGTGTGCATGTATCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0030874 GO:0030875 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031497 GO:0031935 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0034622 GO:0034724 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044877 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060968 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0140110 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hira WD40

Protein Analysis

889

Amino Acids

97.66

Weight (kDa)

8.86

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_CAF1B_HIR1	PF24105	11 - 203	3e-45	CAF1B/HIR1 beta-propeller domain
WD40_Prp19	PF24814	13 - 91	5.4e-06	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	14 - 98	8.3e-08	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	15 - 200	5.8e-32	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	18 - 201	1.5e-16	Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta	PF25391	22 - 193	1.1e-11	G protein beta WD-40 repeat protein
WD40_CDC20-Fz	PF24807	55 - 263	8.2e-21	CDC20/Fizzy WD40 domain
WD40	PF00400	57 - 92	1.3e-06	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	66 - 271	1.2e-26	THOC3 beta-propeller domain
Beta-prop_WDR35_TULP_N	PF24797	68 - 230	6.1e-08	WDR35/TULP4 N-terminal
WD40_Prp19	PF24814	111 - 199	3e-14	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	111 - 195	7e-08	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	112 - 210	2.3e-17	WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	112 - 208	3.7e-06	TEP-1 second beta-propeller
Beta-prop_WDR3_2nd	PF25172	115 - 211	1.4e-09	WDR3 second beta-propeller domain
WD40	PF00400	116 - 153	4.7e-10	WD domain, G-beta repeat
WD40_WDHD1_1st	PF24817	121 - 258	2.5e-15	WDHD1 first WD40 domain
Beta-prop_Aladin	PF25460	122 - 232	8.2e-09	Aladin seven-bladed propeller
WD40_MABP1-WDR62_2nd	PF24782	122 - 195	1e-05	MABP1/WDR62 second WD40 domain
WD40	PF00400	158 - 194	2.3e-06	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	215 - 373	2.3e-09	CAF1B/HIR1 beta-propeller domain
Hira	PF07569	691 - 877	8e-42	TUP1-like enhancer of split

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44530 AT3G44530 AT3G44530 AT3G44530
fragaria_vesca	FvH4_3g24580 FvH4_3g24580 FvH4_3g24580 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610
malus_domestica	MD00G1078300.v1.1 MD10G1043400.v1.1
prunus_persica	Prupe.8G049500_v2.0.a1 Prupe.8G049500_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1
pyrus_communis	pycom05g03110 pycom10g03040
rosa_chinensis	RchiOBHm_Chr1g0317731 RchiOBHm_Chr5g0044121
rosa_laevigata	RLG00000030587 RLG00000034243 RLG00000034244
rosa_multiflora	Rmu_sc0000939.1_g000028 Rmu_sc0001158.1_g000004
rosa_roxburghii	Rroxscaffold_1G00036920 Rroxscaffold_4G00330210
rosa_rugosa	Rorug01G0016900.1 Rorug05G0210500 Rorug05G0210600
rosa_samantha	Rh1AG029200 Rh1BG025400 Rh1CG026500 Rh1DG044000 Rh5AG294700 Rh5BG303400 Rh5CG330300 Rh5DG312200
rosa_wichuraiana	Rw0G013170 Rw0G019570 Rw5G027330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	924
AarI	CACCTGC	1 cut(s)	1952
AasI	GACNNNNNNGTC	1 cut(s)	1455
Acc36I	ACCTGC	3 cut(s)	1180, 1952, 2452
AccB1I	GGYRCC	1 cut(s)	881
AccBSI	CCGCTC	1 cut(s)	2442
AccII	CGCG	1 cut(s)	2079
AciI	CCGC	9 cut(s)	112, 426, 658, 985, 1307, 1674, 1838, 2194, 2442
AcoI	YGGCCR	3 cut(s)	420, 619, 1120
AcsI	RAATTY	5 cut(s)	45, 829, 1615, 1912, 2404
AcvI	CACGTG	1 cut(s)	2534
AdeI	CACNNNGTG	2 cut(s)	109, 2067
AfaI	GTAC	4 cut(s)	955, 1194, 1851, 2526
AfiI	CCNNNNNNNGG	8 cut(s)	93, 138, 139, 296, 654, 702, 1105, 1307
AflIII	ACRYGT	1 cut(s)	2531
AgeI	ACCGGT	1 cut(s)	1125
AgsI	TTSAA	3 cut(s)	1401, 1785, 1812
AhdI	GACNNNNNGTC	3 cut(s)	978, 1667, 2218
AjnI	CCWGG	8 cut(s)	67, 132, 289, 1530, 2052, 2417, 2494, 2627
AjuI	GAANNNNNNNTTGG	2 cut(s)	2132, 2164
AloI	GAACNNNNNNTCC	4 cut(s)	113, 145, 277, 309
Alw21I	GWGCWC	1 cut(s)	2539
Alw26I	GTCTC	3 cut(s)	405, 2068, 2207
AlwNI	CAGNNNCTG	4 cut(s)	254, 731, 1238, 1766
AoxI	GGCC	5 cut(s)	420, 493, 619, 1120, 1871
ApeKI	GCWGC	4 cut(s)	857, 1232, 1886, 2108
ApoI	RAATTY	5 cut(s)	45, 829, 1615, 1912, 2404
AsiGI	ACCGGT	1 cut(s)	1125
AspLEI	GCGC	1 cut(s)	2081
AspS9I	GGNCC	3 cut(s)	493, 669, 873
AsuHPI	GGTGA	8 cut(s)	110, 811, 1120, 1391, 1663, 1933, 2456, 2521
AvaII	GGWCC	2 cut(s)	669, 873
AxyI	CCTNAGG	1 cut(s)	1875
BalI	TGGCCA	2 cut(s)	422, 1122
BamHI	GGATCC	2 cut(s)	526, 2165
BanI	GGYRCC	1 cut(s)	881
BanII	GRGCYC	3 cut(s)	327, 1046, 1525
BarI	GAAGNNNNNNTAC	2 cut(s)	1833, 1865
BbrPI	CACGTG	1 cut(s)	2534
Bbv12I	GWGCWC	1 cut(s)	2539
BbvI	GCAGC	4 cut(s)	844, 1244, 1873, 2120
BccI	CCATC	9 cut(s)	660, 1043, 1073, 1331, 1448, 2036, 2089, 2257, 2513
BceAI	ACGGC	1 cut(s)	634
BciT130I	CCWGG	8 cut(s)	69, 134, 291, 1532, 2054, 2419, 2496, 2629
BclI	TGATCA	5 cut(s)	190, 259, 1561, 1920, 2271
BcoDI	GTCTC	3 cut(s)	405, 2068, 2207
BfaI	CTAG	6 cut(s)	501, 737, 1419, 1677, 1797, 2487
BfmI	CTRYAG	2 cut(s)	375, 2106
BfuAI	ACCTGC	3 cut(s)	1180, 1952, 2452
BglII	AGATCT	1 cut(s)	2300
BisI	GCNGC	5 cut(s)	659, 858, 1233, 1887, 2109
BlpI	GCTNAGC	3 cut(s)	225, 1242, 2550
BlsI	GCNGC	5 cut(s)	660, 859, 1234, 1888, 2110
Bme1390I	CCNGG	8 cut(s)	69, 134, 291, 1532, 2054, 2419, 2496, 2629
Bme18I	GGWCC	2 cut(s)	669, 873
BmeRI	GACNNNNNGTC	3 cut(s)	978, 1667, 2218
BmgT120I	GGNCC	3 cut(s)	493, 669, 873
BmrFI	CCNGG	8 cut(s)	69, 134, 291, 1532, 2054, 2419, 2496, 2629
BmrI	ACTGGG	2 cut(s)	12, 634
BmsI	GCATC	8 cut(s)	254, 405, 1126, 1340, 1834, 2036, 2058, 2251
BmuI	ACTGGG	2 cut(s)	12, 634
BoxI	GACNNNNGTC	1 cut(s)	597
BplI	GAGNNNNNCTC	2 cut(s)	589, 621
BpmI	CTGGAG	3 cut(s)	387, 616, 1481
Bpu10I	CCTNAGC	1 cut(s)	2372
Bpu1102I	GCTNAGC	3 cut(s)	225, 1242, 2550
BpuEI	CTTGAG	2 cut(s)	828, 1247
BsaAI	YACGTR	1 cut(s)	2534
BsaBI	GATNNNNATC	1 cut(s)	2305
BsaI	GGTCTC	1 cut(s)	405
BsaJI	CCNNGG	4 cut(s)	132, 133, 716, 1530
BsaWI	WCCGGW	1 cut(s)	1125
Bsc4I	CCNNNNNNNGG	8 cut(s)	93, 138, 139, 296, 654, 702, 1105, 1307
Bse118I	RCCGGY	1 cut(s)	1125
Bse1I	ACTGG	5 cut(s)	18, 94, 599, 629, 1149
Bse21I	CCTNAGG	1 cut(s)	1875
Bse3DI	GCAATG	3 cut(s)	360, 472, 1651
Bse8I	GATNNNNATC	1 cut(s)	2305
BseBI	CCWGG	8 cut(s)	69, 134, 291, 1532, 2054, 2419, 2496, 2629
BseDI	CCNNGG	4 cut(s)	132, 133, 716, 1530
BseGI	GGATG	7 cut(s)	671, 1084, 1153, 1279, 2039, 2049, 2051
BseJI	GATNNNNATC	1 cut(s)	2305
BseLI	CCNNNNNNNGG	8 cut(s)	93, 138, 139, 296, 654, 702, 1105, 1307
BseMI	GCAATG	3 cut(s)	360, 472, 1651
BseMII	CTCAG	3 cut(s)	297, 1538, 2564
BseNI	ACTGG	5 cut(s)	18, 94, 599, 629, 1149
BseRI	GAGGAG	1 cut(s)	1383
BseXI	GCAGC	4 cut(s)	844, 1244, 1873, 2120
BseYI	CCCAGC	1 cut(s)	1210
BsgI	GTGCAG	2 cut(s)	843, 1930
Bsh1236I	CGCG	1 cut(s)	2079
BshFI	GGCC	5 cut(s)	422, 495, 621, 1122, 1873
BshNI	GGYRCC	1 cut(s)	881
BshTI	ACCGGT	1 cut(s)	1125
BsiHKAI	GWGCWC	1 cut(s)	2539
BsiSI	CCGG	1 cut(s)	1126
BslFI	GGGAC	5 cut(s)	655, 966, 1513, 2370, 2563
BslI	CCNNNNNNNGG	8 cut(s)	93, 138, 139, 296, 654, 702, 1105, 1307
BsmAI	GTCTC	3 cut(s)	405, 2068, 2207
BsmBI	CGTCTC	1 cut(s)	2068
BsmFI	GGGAC	5 cut(s)	655, 966, 1513, 2370, 2563
BsmI	GAATGC	1 cut(s)	721
BsnI	GGCC	5 cut(s)	422, 495, 621, 1122, 1873
Bso31I	GGTCTC	1 cut(s)	405
Bsp1286I	GDGCHC	4 cut(s)	327, 1046, 1525, 2539
Bsp1720I	GCTNAGC	3 cut(s)	225, 1242, 2550
BspACI	CCGC	9 cut(s)	112, 426, 658, 985, 1307, 1674, 1838, 2194, 2442
BspANI	GGCC	5 cut(s)	422, 495, 621, 1122, 1873
BspCNI	CTCAG	3 cut(s)	298, 1537, 2563
BspFNI	CGCG	1 cut(s)	2079
BspHI	TCATGA	2 cut(s)	277, 2209
BspMAI	CTGCAG	2 cut(s)	379, 2110
BspMI	ACCTGC	3 cut(s)	1180, 1952, 2452
BspT107I	GGYRCC	1 cut(s)	881
BspTNI	GGTCTC	1 cut(s)	405
BsrBI	CCGCTC	1 cut(s)	2442
BsrDI	GCAATG	3 cut(s)	360, 472, 1651
BsrFI	RCCGGY	1 cut(s)	1125
BsrI	ACTGG	5 cut(s)	18, 94, 599, 629, 1149
BssAI	RCCGGY	1 cut(s)	1125
BssECI	CCNNGG	4 cut(s)	132, 133, 716, 1530
BssT1I	CCWWGG	1 cut(s)	716
Bst2UI	CCWGG	8 cut(s)	69, 134, 291, 1532, 2054, 2419, 2496, 2629
Bst4CI	ACNGT	8 cut(s)	571, 964, 1218, 1294, 1758, 1768, 1999, 2201
Bst6I	CTCTTC	1 cut(s)	1355
BstAPI	GCANNNNNTGC	2 cut(s)	1238, 2261
BstBAI	YACGTR	1 cut(s)	2534
BstC8I	GCNNGC	9 cut(s)	420, 424, 1248, 1407, 2266, 2413, 2451, 2556, 2568
BstEII	GGTNACC	3 cut(s)	98, 1669, 2152
BstENI	CCTNNNNNAGG	1 cut(s)	652
BstF5I	GGATG	7 cut(s)	671, 1084, 1153, 1279, 2039, 2049, 2051
BstFNI	CGCG	1 cut(s)	2079
BstHHI	GCGC	1 cut(s)	2081
BstMAI	GTCTC	3 cut(s)	405, 2068, 2207
BstMWI	GCNNNNNNNGC	8 cut(s)	501, 1238, 1247, 1328, 1844, 2012, 2261, 2555
BstNI	CCWGG	8 cut(s)	69, 134, 291, 1532, 2054, 2419, 2496, 2629
BstNSI	RCATGY	3 cut(s)	1071, 1886, 2662
BstPAI	GACNNNNGTC	1 cut(s)	597
BstPI	GGTNACC	3 cut(s)	98, 1669, 2152
BstSCI	CCNGG	8 cut(s)	67, 132, 289, 1530, 2052, 2417, 2494, 2627
BstSFI	CTRYAG	2 cut(s)	375, 2106
BstUI	CGCG	1 cut(s)	2079
BstV1I	GCAGC	4 cut(s)	844, 1244, 1873, 2120
BstX2I	RGATCY	9 cut(s)	251, 388, 526, 641, 2102, 2165, 2182, 2300, 2306
BstYI	RGATCY	9 cut(s)	251, 388, 526, 641, 2102, 2165, 2182, 2300, 2306
Bsu36I	CCTNAGG	1 cut(s)	1875
BsuRI	GGCC	5 cut(s)	422, 495, 621, 1122, 1873
BtgZI	GCGATG	1 cut(s)	1188
BtsCI	GGATG	7 cut(s)	671, 1084, 1153, 1279, 2039, 2049, 2051
BtsI	GCAGTG	2 cut(s)	322, 477
BtsIMutI	CAGTG	8 cut(s)	87, 303, 322, 477, 622, 1092, 1916, 1995
BveI	ACCTGC	3 cut(s)	1180, 1952, 2452
Cac8I	GCNNGC	9 cut(s)	420, 424, 1248, 1407, 2266, 2413, 2451, 2556, 2568
CaiI	CAGNNNCTG	4 cut(s)	254, 731, 1238, 1766
CciI	TCATGA	2 cut(s)	277, 2209
CfoI	GCGC	1 cut(s)	2081
Cfr10I	RCCGGY	1 cut(s)	1125
Cfr13I	GGNCC	3 cut(s)	493, 669, 873
CseI	GACGC	2 cut(s)	2085, 2443
Csp6I	GTAC	4 cut(s)	954, 1193, 1850, 2525
CspAI	ACCGGT	1 cut(s)	1125
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviQI	GTAC	4 cut(s)	954, 1193, 1850, 2525
DraI	TTTAAA	3 cut(s)	1389, 2238, 2574
DraIII	CACNNNGTG	2 cut(s)	109, 2067
DrdI	GACNNNNNNGTC	1 cut(s)	1455
DriI	GACNNNNNGTC	3 cut(s)	978, 1667, 2218
DseDI	GACNNNNNNGTC	1 cut(s)	1455
EaeI	YGGCCR	3 cut(s)	420, 619, 1120
Eam1104I	CTCTTC	1 cut(s)	1355
Eam1105I	GACNNNNNGTC	3 cut(s)	978, 1667, 2218
EarI	CTCTTC	1 cut(s)	1355
Eco130I	CCWWGG	1 cut(s)	716
Eco24I	GRGCYC	3 cut(s)	327, 1046, 1525
Eco31I	GGTCTC	1 cut(s)	405
Eco47I	GGWCC	2 cut(s)	669, 873
Eco72I	CACGTG	1 cut(s)	2534
Eco81I	CCTNAGG	1 cut(s)	1875
Eco91I	GGTNACC	3 cut(s)	98, 1669, 2152
EcoNI	CCTNNNNNAGG	1 cut(s)	652
EcoO65I	GGTNACC	3 cut(s)	98, 1669, 2152
EcoRII	CCWGG	8 cut(s)	67, 132, 289, 1530, 2052, 2417, 2494, 2627
EcoT14I	CCWWGG	1 cut(s)	716
EcoT22I	ATGCAT	1 cut(s)	2051
EcoT38I	GRGCYC	3 cut(s)	327, 1046, 1525
ErhI	CCWWGG	1 cut(s)	716
Esp3I	CGTCTC	1 cut(s)	2068
FalI	AAGNNNNNCTT	2 cut(s)	995, 1027
FaqI	GGGAC	5 cut(s)	655, 966, 1513, 2370, 2563
FauI	CCCGC	3 cut(s)	105, 992, 1300
FbaI	TGATCA	5 cut(s)	190, 259, 1561, 1920, 2271
Fnu4HI	GCNGC	5 cut(s)	659, 858, 1233, 1887, 2109
FokI	GGATG	7 cut(s)	678, 1091, 1160, 1286, 2036, 2046, 2058
FriOI	GRGCYC	3 cut(s)	327, 1046, 1525
Fsp4HI	GCNGC	5 cut(s)	659, 858, 1233, 1887, 2109
FspBI	CTAG	6 cut(s)	501, 737, 1419, 1677, 1797, 2487
GlaI	GCGC	1 cut(s)	2080
GluI	GCNGC	5 cut(s)	659, 858, 1233, 1887, 2109
GsaI	CCCAGC	1 cut(s)	1214
GsuI	CTGGAG	3 cut(s)	387, 616, 1481
HaeIII	GGCC	5 cut(s)	422, 495, 621, 1122, 1873
HapII	CCGG	1 cut(s)	1126
HgaI	GACGC	2 cut(s)	2085, 2443
HhaI	GCGC	1 cut(s)	2081
Hin6I	GCGC	1 cut(s)	2079
HinP1I	GCGC	1 cut(s)	2079
HinfI	GANTC	5 cut(s)	158, 410, 598, 943, 2213
HpaII	CCGG	1 cut(s)	1126
HphI	GGTGA	8 cut(s)	110, 811, 1120, 1391, 1663, 1933, 2456, 2521
Hpy166II	GTNNAC	3 cut(s)	74, 873, 2059
Hpy188I	TCNGA	6 cut(s)	256, 531, 559, 1336, 1561, 1975
Hpy8I	GTNNAC	3 cut(s)	74, 873, 2059
HpyCH4III	ACNGT	8 cut(s)	571, 964, 1218, 1294, 1758, 1768, 1999, 2201
HpyCH4IV	ACGT	3 cut(s)	1344, 1905, 2533
HpyF10VI	GCNNNNNNNGC	8 cut(s)	501, 1238, 1247, 1328, 1844, 2012, 2261, 2555
HpySE526I	ACGT	3 cut(s)	1344, 1905, 2533
HspAI	GCGC	1 cut(s)	2079
Ksp22I	TGATCA	5 cut(s)	190, 259, 1561, 1920, 2271
LmnI	GCTCC	5 cut(s)	542, 1041, 1370, 2420, 2502
Lsp1109I	GCAGC	4 cut(s)	844, 1244, 1873, 2120
LweI	GCATC	8 cut(s)	254, 405, 1126, 1340, 1834, 2036, 2058, 2251
MaeI	CTAG	6 cut(s)	501, 737, 1419, 1677, 1797, 2487
MaeII	ACGT	3 cut(s)	1344, 1905, 2533
MaeIII	GTNAC	9 cut(s)	98, 517, 590, 1340, 1669, 1993, 2126, 2152, 2509
MbiI	CCGCTC	1 cut(s)	2442
MboII	GAAGA	7 cut(s)	167, 1003, 1369, 1372, 1853, 2051, 2638
MfeI	CAATTG	1 cut(s)	394
MflI	RGATCY	9 cut(s)	251, 388, 526, 641, 2102, 2165, 2182, 2300, 2306
MhlI	GDGCHC	4 cut(s)	327, 1046, 1525, 2539
MlsI	TGGCCA	2 cut(s)	422, 1122
MluNI	TGGCCA	2 cut(s)	422, 1122
MlyI	GAGTC	4 cut(s)	404, 607, 952, 2207
MmeI	TCCRAC	2 cut(s)	2011, 2480
Mox20I	TGGCCA	2 cut(s)	422, 1122
Mph1103I	ATGCAT	1 cut(s)	2051
MscI	TGGCCA	2 cut(s)	422, 1122
MslI	CAYNNNNRTG	1 cut(s)	1347
Msp20I	TGGCCA	2 cut(s)	422, 1122
MspA1I	CMGCKG	2 cut(s)	426, 2554
MspI	CCGG	1 cut(s)	1126
MspR9I	CCNGG	8 cut(s)	69, 134, 291, 1532, 2054, 2419, 2496, 2629
MunI	CAATTG	1 cut(s)	394
Mva1269I	GAATGC	1 cut(s)	721
MvaI	CCWGG	8 cut(s)	69, 134, 291, 1532, 2054, 2419, 2496, 2629
MvnI	CGCG	1 cut(s)	2079
MwoI	GCNNNNNNNGC	8 cut(s)	501, 1238, 1247, 1328, 1844, 2012, 2261, 2555
NmeAIII	GCCGAG	1 cut(s)	1849
NmuCI	GTSAC	7 cut(s)	98, 590, 1340, 1669, 1993, 2126, 2509
NsiI	ATGCAT	1 cut(s)	2051
NspI	RCATGY	3 cut(s)	1071, 1886, 2662
PagI	TCATGA	2 cut(s)	277, 2209
PaqCI	CACCTGC	1 cut(s)	1952
PasI	CCCWGGG	1 cut(s)	133
PctI	GAATGC	1 cut(s)	721
PfeI	GAWTC	1 cut(s)	158
PinAI	ACCGGT	1 cut(s)	1125
PkrI	GCNGC	5 cut(s)	660, 859, 1234, 1888, 2110
PleI	GAGTC	4 cut(s)	404, 606, 951, 2207
PmaCI	CACGTG	1 cut(s)	2534
PmlI	CACGTG	1 cut(s)	2534
PpsI	GAGTC	4 cut(s)	404, 606, 951, 2207
Ppu21I	YACGTR	1 cut(s)	2534
PshAI	GACNNNNGTC	1 cut(s)	597
PsiI	TTATAA	1 cut(s)	924
Psp6I	CCWGG	8 cut(s)	67, 132, 289, 1530, 2052, 2417, 2494, 2627
PspCI	CACGTG	1 cut(s)	2534
PspEI	GGTNACC	3 cut(s)	98, 1669, 2152
PspFI	CCCAGC	1 cut(s)	1210
PspGI	CCWGG	8 cut(s)	67, 132, 289, 1530, 2052, 2417, 2494, 2627
PspPI	GGNCC	3 cut(s)	493, 669, 873
PstI	CTGCAG	2 cut(s)	379, 2110
PstNI	CAGNNNCTG	4 cut(s)	254, 731, 1238, 1766
PsuI	RGATCY	9 cut(s)	251, 388, 526, 641, 2102, 2165, 2182, 2300, 2306
PvuII	CAGCTG	1 cut(s)	2554
RsaI	GTAC	4 cut(s)	955, 1194, 1851, 2526
RsaNI	GTAC	4 cut(s)	954, 1193, 1850, 2525
RseI	CAYNNNNRTG	1 cut(s)	1347
SatI	GCNGC	5 cut(s)	659, 858, 1233, 1887, 2109
Sau96I	GGNCC	3 cut(s)	493, 669, 873
SchI	GAGTC	4 cut(s)	404, 607, 952, 2207
ScrFI	CCNGG	8 cut(s)	69, 134, 291, 1532, 2054, 2419, 2496, 2629
SduI	GDGCHC	4 cut(s)	327, 1046, 1525, 2539
SfaNI	GCATC	8 cut(s)	254, 405, 1126, 1340, 1834, 2036, 2058, 2251
SfcI	CTRYAG	2 cut(s)	375, 2106
SinI	GGWCC	2 cut(s)	669, 873
SmiMI	CAYNNNNRTG	1 cut(s)	1347
SmlI	CTYRAG	2 cut(s)	843, 1226
SmoI	CTYRAG	2 cut(s)	843, 1226
SsiI	CCGC	9 cut(s)	112, 426, 658, 985, 1307, 1674, 1838, 2194, 2442
SspI	AATATT	1 cut(s)	2480
SspMI	CTAG	6 cut(s)	501, 737, 1419, 1677, 1797, 2487
StyD4I	CCNGG	8 cut(s)	67, 132, 289, 1530, 2052, 2417, 2494, 2627
StyI	CCWWGG	1 cut(s)	716
TaaI	ACNGT	8 cut(s)	571, 964, 1218, 1294, 1758, 1768, 1999, 2201
TaiI	ACGT	3 cut(s)	1347, 1908, 2536
TaqI	TCGA	3 cut(s)	336, 413, 1459
TatI	WGTACW	1 cut(s)	2524
TauI	GCSGC	1 cut(s)	661
TfiI	GAWTC	1 cut(s)	158
TscAI	CASTG	8 cut(s)	94, 310, 322, 484, 629, 1092, 1923, 2002
TseFI	GTSAC	7 cut(s)	98, 590, 1340, 1669, 1993, 2126, 2509
TseI	GCWGC	4 cut(s)	857, 1232, 1886, 2108
Tsp45I	GTSAC	7 cut(s)	98, 590, 1340, 1669, 1993, 2126, 2509
TspDTI	ATGAA	9 cut(s)	140, 168, 266, 532, 676, 1164, 1752, 2198, 2601
TspGWI	ACGGA	3 cut(s)	176, 1674, 2655
TspRI	CASTG	8 cut(s)	94, 310, 322, 484, 629, 1092, 1923, 2002
VpaK11BI	GGWCC	2 cut(s)	669, 873
XagI	CCTNNNNNAGG	1 cut(s)	652
XapI	RAATTY	5 cut(s)	45, 829, 1615, 1912, 2404
XbaI	TCTAGA	1 cut(s)	736
XceI	RCATGY	3 cut(s)	1071, 1886, 2662
XspI	CTAG	6 cut(s)	501, 737, 1419, 1677, 1797, 2487
Zsp2I	ATGCAT	1 cut(s)	2051

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.