Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001666

Physical Location & Seq

Genomic Coordinates Reverse (-)

5287066 .. 5291988

Gene Structure 4923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54802

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2685 bp

ATGAGCAATGGTATTTGCACTGCTGTTCTTAGGGGCCATTCTAGCTTGGTTAAAGGAGTTACTTGGGATCCGATTGGCTCCTTCATAGCAAGTCAATCAGATGATAAGACTGTAATTATTTGGCGAACAAGTGACTGGAGTCTTGCTCACAAAACAGACGGCCACTGGGCAAAATCACTTGGATCTACCTTTTTCAGGCGGCTTGGATGGTCCCCTTGTGGTCATTTCATTACTACCACTCATGGGTTCCAGAAACCAAGGCATTCAGCACCTGTTCTAGAGAGAGGGGAATGGTCTGCTACTTTTGACTTCTTAGGACATAATGCACCTGTGATTGTGGTGAAGTTTAACCACTCAATGTTTAAGAGGAATTTTTCCAATGCTCAAGAAGGGAAAGCTGCACCTGTTGGGTGGACCAATGGCACCTCAAAAATAGGTGGGAAAGAAAAAGAACTACAACCTTATAATGTTATAGCAATCGGGAGTCAGGATCGTACAATAACTGTATGGACGACTGCAAGTCCCCGCCCTCTCTTTGTAGCAAAGCATTTCTTCACTCAAAGTGTTGTGGATTTATCTTGGAGCCCCGATGGTTATTCACTTTTTGCATGTTCTTTGGATGGTTCAGTGGCTACTTTCCATTTTGAGGTGAAAGAGCTTGGCCACCGGTTAAGTGATGCTGAACTGGATGAATTAAAGAGAAGTCGTTATGGCGATGTTAGAGGTAGGCAGGTACATTTAGCTGAAAGCCCAGCACAGTTATTGCTTGAGGCAGCTTCTGCTAAGCAAGCCCCAAAGAAAAAAGTGGTTCGGGATGTTCAGCAAAGCCAGACAGTCAAACCTTCTGCGGGTGTGGTGGTTGCAACAAAAGCATCTGATGGTCACGTTGATGATAGGAAGAAGAGTGGAGGAGCTTCTGGTGATGTTTTAAATAAAGTTTCAATGCCTGCCCACATTTCTAGTCCTGTAAAGCAAAGAGAATATAGACGACCTGATGGTCGAAAGAGGATTATTCCAGAGGCAGTTGGTGTGCCTCTCCAGAAGGAAAATAATTCTGTTGGGGCTCAGTCCCAGGCACTTGACTTCCCTCTAATGCCTTCTGATCACAGAAAGAATGATAGTGGGTTAGTTGCTGATGATAGGGGGATTAAAGAAAATTCTGTCAGGGAAACACTTATGAGAGGCAATGATATAAAGGATGGACAGGGGGTCACCGCTAGAGCTATGATTACCAACAGCCTTGTTATTGAGAAGGTTCCCACCTCCACAGGTAGAGATGAAAGCATAAATATAGAACAGTCAGGAACTGTGAAGGCTTCTAATTCAATATGTGGTTCTAGTCCTATTCTTTCAATTAGGGTGTTTGATAAGAAGGAAGCGGAAGATGCTGTACCATATTGCTTGGAAGCTCGGCCTAAGGAACATGCTGCAAATGACATTATTAACGTGGGAAATTCACTGATCATAAAAGAAACCGAAATCACCTGCACAAAAGGGTTGCAAACACTTTGGTCTGATAGAATATCTGGGAAAGTCACTGTTTTAGCTGGAAATGCAAACTTTTGGGCTGTTGGATGTGAAGATGGATGCATCCAGGTTTACACAAAGTGTGGGAGACGCGCTATGCCGACTATGATGGTAGGATCTGCAGCAGTTTTTATAGATTGTGACGAGTGCTGGAAGTTGTTTTTGGTTACCAGAAAAGGATCCTTGTATCTATGGGATCTATTAAAGCGGAACTGTCTCCTTCATGACTCGTTGTCATCTCTGGTTGCTTTAAACCCAAATCCATCTGCAAATGATGCAGGCATGATCAAAGTTATATCAGCAAAGCTATCAAGATCTGGATCTCCCCTTGTTGTTCTCGCTACTCGCCATGCCTTCCTTTTTGACATGGGACTGATGTGTTGGCTTAGGGTTGCAGATGACTGCTTTTCTGGGTCAAATTTTGCAAGCTCCTGGCATTTGGGTTTGACGCAGAGCGGTGAGCTGGCTGGTTTGCAGGTTGATGTTAAGAAATATTTGGCTAGGAAGCCAGGTTGGAGCAGGGTGACTGATGATGGAGTACAGACACGTGCTCATTTGGAAGCTCAGCTGGCTTCTTTGCTGGCTTTAAAGTCCCCTAATGAATATCGCCAATGCCTTCTATCATATATACGCTTCCTTGCCAGAGAAGCAGACGAGTCTCGTCTACGAGAAGTCTGTGAGAGTTTCCTTGGACCTCCTACTGGAATGGTGGAAGCTACTTCTTTAGATTCAAAGAACTTGGCATGGGATCCTTTTGTGCTTGGAATGAGGAAACATAAGCTCTTACGAGAAGATATTCTCCCGGCAATGGCTTCAAATCGAAAAGTACAGCGTTTGCTCAATGAATTCATGGATCTAATTTCTGAATATGAAAGTGCTGAAATAAATGTAGAGTCAAAAACTCAAACTTCACCAACAGCACGTCTGTCAGCAGCTGATCCAATGGAGTCTGCTCCATCCAGTAAAAATAAAATGGATTCTGTCCTTGTGGCAACTGATCAAGCAAAGCCTGTTCCCGATCCAACTGATCAAAAAGACTCCACTCAGTTAGCAACAGATAGAGAAAATTCTGCTTCAACAGCAAAAAATGAAGTTAATTCAGATCCACCAAAGCTCAATCACGTTACTCATGCCCCACAAAATGATGCAGGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0030874 GO:0030875 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031497 GO:0031935 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0034622 GO:0034724 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044877 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060968 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0140110 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hira WD40

Protein Analysis

894

Amino Acids

97.85

Weight (kDa)

8.59

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	3 - 56	1.3e-06	WDR5 beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	5 - 220	1.5e-13	CAF1B/HIR1 beta-propeller domain
WD40_WDHD1_1st	PF24817	5 - 105	1.4e-06	WDHD1 first WD40 domain
WD40	PF00400	5 - 41	2.3e-06	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	7 - 80	7.8e-06	THOC3 beta-propeller domain
Hira	PF07569	538 - 737	8.9e-48	TUP1-like enhancer of split

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44530 AT3G44530 AT3G44530 AT3G44530
fragaria_vesca	FvH4_3g24580 FvH4_3g24580 FvH4_3g24580 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610
malus_domestica	MD00G1078300.v1.1 MD10G1043400.v1.1
prunus_persica	Prupe.8G049500_v2.0.a1 Prupe.8G049500_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1
pyrus_communis	pycom05g03110 pycom10g03040
rosa_chinensis	RchiOBHm_Chr1g0317731 RchiOBHm_Chr5g0044121
rosa_laevigata	RLG00000030587 RLG00000034243 RLG00000034244
rosa_multiflora	Rmu_sc0000939.1_g000028 Rmu_sc0001158.1_g000004
rosa_roxburghii	Rroxscaffold_1G00036920 Rroxscaffold_4G00330210
rosa_rugosa	Rorug01G0016900.1 Rorug05G0210500 Rorug05G0210600
rosa_samantha	Rh1AG029200 Rh1BG025400 Rh1CG026500 Rh1DG044000 Rh5AG294700 Rh5BG303400 Rh5CG330300 Rh5DG312200
rosa_wichuraiana	Rw0G013170 Rw0G019570 Rw5G027330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	465
AarI	CACCTGC	1 cut(s)	1493
AasI	GACNNNNNNGTC	1 cut(s)	996
Acc36I	ACCTGC	4 cut(s)	721, 1493, 1993, 2666
AccB1I	GGYRCC	1 cut(s)	422
AccBSI	CCGCTC	1 cut(s)	1983
AccI	GTMKAC	1 cut(s)	2191
AccII	CGCG	1 cut(s)	1620
AciI	CCGC	7 cut(s)	199, 526, 848, 1215, 1379, 1735, 1983
AcoI	YGGCCR	2 cut(s)	160, 661
AcsI	RAATTY	6 cut(s)	370, 1156, 1453, 1945, 2372, 2593
AcvI	CACGTG	1 cut(s)	2075
AdeI	CACNNNGTG	1 cut(s)	1608
AfaI	GTAC	5 cut(s)	496, 735, 1392, 2067, 2355
AfiI	CCNNNNNNNGG	6 cut(s)	195, 243, 646, 848, 2228, 2335
AflIII	ACRYGT	1 cut(s)	2072
AgeI	ACCGGT	1 cut(s)	666
AgsI	TTSAA	6 cut(s)	942, 1326, 1353, 2259, 2343, 2604
AhdI	GACNNNNNGTC	3 cut(s)	519, 1208, 1759
AjiI	CACGTC	1 cut(s)	2450
AjnI	CCWGG	4 cut(s)	1071, 1593, 1958, 2035
AjuI	GAANNNNNNNTTGG	2 cut(s)	1673, 1705
Alw21I	GWGCWC	1 cut(s)	2080
Alw26I	GTCTC	3 cut(s)	1609, 1748, 2190
AlwNI	CAGNNNCTG	4 cut(s)	272, 779, 1307, 2462
AoxI	GGCC	4 cut(s)	34, 160, 661, 1412
ApeKI	GCWGC	5 cut(s)	398, 773, 1427, 1649, 2459
ApoI	RAATTY	6 cut(s)	370, 1156, 1453, 1945, 2372, 2593
AsiGI	ACCGGT	1 cut(s)	666
Asp700I	GAANNNNTTC	1 cut(s)	2322
AspLEI	GCGC	1 cut(s)	1622
AspS9I	GGNCC	4 cut(s)	34, 210, 414, 2219
AsuC2I	CCSGG	1 cut(s)	2330
AsuHPI	GGTGA	8 cut(s)	352, 661, 932, 1204, 1474, 1997, 2062, 2430
AvaII	GGWCC	3 cut(s)	210, 414, 2219
AxyI	CCTNAGG	1 cut(s)	1416
BalI	TGGCCA	1 cut(s)	663
BamHI	GGATCC	3 cut(s)	67, 1706, 2275
BanI	GGYRCC	1 cut(s)	422
BanII	GRGCYC	2 cut(s)	587, 1066
BarI	GAAGNNNNNNTAC	2 cut(s)	1374, 1406
BbrPI	CACGTG	1 cut(s)	2075
Bbv12I	GWGCWC	1 cut(s)	2080
BbvI	GCAGC	5 cut(s)	385, 785, 1414, 1661, 2471
BceAI	ACGGC	1 cut(s)	175
BciT130I	CCWGG	4 cut(s)	1073, 1595, 1960, 2037
BclI	TGATCA	5 cut(s)	1102, 1461, 1812, 2524, 2554
BcnI	CCSGG	1 cut(s)	2330
BcoDI	GTCTC	3 cut(s)	1609, 1748, 2190
BfaI	CTAG	6 cut(s)	42, 278, 960, 1218, 1338, 2028
BfmI	CTRYAG	1 cut(s)	1647
BfuAI	ACCTGC	4 cut(s)	721, 1493, 1993, 2666
BglII	AGATCT	1 cut(s)	1841
BisI	GCNGC	6 cut(s)	200, 399, 774, 1428, 1650, 2460
BlpI	GCTNAGC	2 cut(s)	783, 2091
BlsI	GCNGC	6 cut(s)	201, 400, 775, 1429, 1651, 2461
Bme1390I	CCNGG	5 cut(s)	1073, 1595, 1960, 2037, 2330
Bme18I	GGWCC	3 cut(s)	210, 414, 2219
BmeRI	GACNNNNNGTC	3 cut(s)	519, 1208, 1759
BmgBI	CACGTC	1 cut(s)	2450
BmgT120I	GGNCC	4 cut(s)	34, 210, 414, 2219
BmrFI	CCNGG	5 cut(s)	1073, 1595, 1960, 2037, 2330
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	7 cut(s)	667, 881, 1375, 1577, 1599, 1792, 2662
BmuI	ACTGGG	1 cut(s)	175
BoxI	GACNNNNGTC	1 cut(s)	138
BplI	GAGNNNNNCTC	2 cut(s)	130, 162
BpmI	CTGGAG	2 cut(s)	157, 1022
Bpu10I	CCTNAGC	1 cut(s)	1913
Bpu1102I	GCTNAGC	2 cut(s)	783, 2091
BpuEI	CTTGAG	2 cut(s)	369, 788
BpuMI	CCSGG	1 cut(s)	2330
BsaAI	YACGTR	1 cut(s)	2075
BsaBI	GATNNNNATC	1 cut(s)	1846
BsaJI	CCNNGG	3 cut(s)	257, 1071, 2215
BsaWI	WCCGGW	1 cut(s)	666
Bsc4I	CCNNNNNNNGG	6 cut(s)	195, 243, 646, 848, 2228, 2335
Bse118I	RCCGGY	1 cut(s)	666
Bse1I	ACTGG	5 cut(s)	140, 170, 690, 2233, 2487
Bse21I	CCTNAGG	1 cut(s)	1416
Bse3DI	GCAATG	3 cut(s)	13, 1192, 2340
Bse8I	GATNNNNATC	1 cut(s)	1846
BseBI	CCWGG	4 cut(s)	1073, 1595, 1960, 2037
BseDI	CCNNGG	3 cut(s)	257, 1071, 2215
BseGI	GGATG	9 cut(s)	212, 625, 694, 820, 1204, 1580, 1590, 1592, 2483
BseJI	GATNNNNATC	1 cut(s)	1846
BseLI	CCNNNNNNNGG	6 cut(s)	195, 243, 646, 848, 2228, 2335
BseMI	GCAATG	3 cut(s)	13, 1192, 2340
BseMII	CTCAG	3 cut(s)	1079, 2105, 2585
BseNI	ACTGG	5 cut(s)	140, 170, 690, 2233, 2487
BseRI	GAGGAG	1 cut(s)	924
BseXI	GCAGC	5 cut(s)	385, 785, 1414, 1661, 2471
BseYI	CCCAGC	1 cut(s)	751
BsgI	GTGCAG	2 cut(s)	384, 1471
Bsh1236I	CGCG	1 cut(s)	1620
BshFI	GGCC	4 cut(s)	36, 162, 663, 1414
BshNI	GGYRCC	1 cut(s)	422
BshTI	ACCGGT	1 cut(s)	666
BsiHKAI	GWGCWC	1 cut(s)	2080
BsiSI	CCGG	2 cut(s)	667, 2330
BslFI	GGGAC	5 cut(s)	196, 507, 1054, 1911, 2104
BslI	CCNNNNNNNGG	6 cut(s)	195, 243, 646, 848, 2228, 2335
BsmAI	GTCTC	3 cut(s)	1609, 1748, 2190
BsmBI	CGTCTC	1 cut(s)	1609
BsmFI	GGGAC	5 cut(s)	196, 507, 1054, 1911, 2104
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	4 cut(s)	36, 162, 663, 1414
Bsp1286I	GDGCHC	3 cut(s)	587, 1066, 2080
Bsp1720I	GCTNAGC	2 cut(s)	783, 2091
BspACI	CCGC	7 cut(s)	199, 526, 848, 1215, 1379, 1735, 1983
BspANI	GGCC	4 cut(s)	36, 162, 663, 1414
BspCNI	CTCAG	3 cut(s)	1078, 2104, 2584
BspFNI	CGCG	1 cut(s)	1620
BspHI	TCATGA	1 cut(s)	1750
BspMAI	CTGCAG	1 cut(s)	1651
BspMI	ACCTGC	4 cut(s)	721, 1493, 1993, 2666
BspT107I	GGYRCC	1 cut(s)	422
BsrBI	CCGCTC	1 cut(s)	1983
BsrDI	GCAATG	3 cut(s)	13, 1192, 2340
BsrFI	RCCGGY	1 cut(s)	666
BsrI	ACTGG	5 cut(s)	140, 170, 690, 2233, 2487
BssAI	RCCGGY	1 cut(s)	666
BssECI	CCNNGG	3 cut(s)	257, 1071, 2215
BssT1I	CCWWGG	2 cut(s)	257, 2215
Bst2UI	CCWGG	4 cut(s)	1073, 1595, 1960, 2037
Bst4CI	ACNGT	8 cut(s)	112, 505, 759, 835, 1299, 1309, 1540, 1742
Bst6I	CTCTTC	1 cut(s)	896
BstAPI	GCANNNNNTGC	2 cut(s)	779, 1802
BstBAI	YACGTR	1 cut(s)	2075
BstC8I	GCNNGC	7 cut(s)	789, 948, 1807, 1954, 1992, 2097, 2109
BstDEI	CTNAG	8 cut(s)	29, 313, 783, 1065, 1416, 1913, 2091, 2571
BstEII	GGTNACC	2 cut(s)	1210, 1693
BstENI	CCTNNNNNAGG	1 cut(s)	193
BstF5I	GGATG	9 cut(s)	212, 625, 694, 820, 1204, 1580, 1590, 1592, 2483
BstFNI	CGCG	1 cut(s)	1620
BstHHI	GCGC	1 cut(s)	1622
BstMAI	GTCTC	3 cut(s)	1609, 1748, 2190
BstNI	CCWGG	4 cut(s)	1073, 1595, 1960, 2037
BstNSI	RCATGY	2 cut(s)	612, 1427
BstPAI	GACNNNNGTC	1 cut(s)	138
BstPI	GGTNACC	2 cut(s)	1210, 1693
BstSCI	CCNGG	5 cut(s)	1071, 1593, 1958, 2035, 2328
BstSFI	CTRYAG	1 cut(s)	1647
BstUI	CGCG	1 cut(s)	1620
BstV1I	GCAGC	5 cut(s)	385, 785, 1414, 1661, 2471
Bsu36I	CCTNAGG	1 cut(s)	1416
BsuRI	GGCC	4 cut(s)	36, 162, 663, 1414
BtgZI	GCGATG	1 cut(s)	729
BtrI	CACGTC	1 cut(s)	2450
BtsCI	GGATG	9 cut(s)	212, 625, 694, 820, 1204, 1580, 1590, 1592, 2483
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	5 cut(s)	18, 163, 633, 1457, 1536
BveI	ACCTGC	4 cut(s)	721, 1493, 1993, 2666
Cac8I	GCNNGC	7 cut(s)	789, 948, 1807, 1954, 1992, 2097, 2109
CaiI	CAGNNNCTG	4 cut(s)	272, 779, 1307, 2462
CciI	TCATGA	1 cut(s)	1750
CfoI	GCGC	1 cut(s)	1622
Cfr10I	RCCGGY	1 cut(s)	666
Cfr13I	GGNCC	4 cut(s)	34, 210, 414, 2219
CseI	GACGC	2 cut(s)	1626, 1984
Csp6I	GTAC	5 cut(s)	495, 734, 1391, 2066, 2354
CspAI	ACCGGT	1 cut(s)	666
CviQI	GTAC	5 cut(s)	495, 734, 1391, 2066, 2354
DdeI	CTNAG	8 cut(s)	29, 313, 783, 1065, 1416, 1913, 2091, 2571
DraI	TTTAAA	3 cut(s)	930, 1779, 2115
DraIII	CACNNNGTG	1 cut(s)	1608
DrdI	GACNNNNNNGTC	1 cut(s)	996
DriI	GACNNNNNGTC	3 cut(s)	519, 1208, 1759
DseDI	GACNNNNNNGTC	1 cut(s)	996
EaeI	YGGCCR	2 cut(s)	160, 661
Eam1104I	CTCTTC	1 cut(s)	896
Eam1105I	GACNNNNNGTC	3 cut(s)	519, 1208, 1759
EarI	CTCTTC	1 cut(s)	896
Eco130I	CCWWGG	2 cut(s)	257, 2215
Eco24I	GRGCYC	2 cut(s)	587, 1066
Eco47I	GGWCC	3 cut(s)	210, 414, 2219
Eco72I	CACGTG	1 cut(s)	2075
Eco81I	CCTNAGG	1 cut(s)	1416
Eco91I	GGTNACC	2 cut(s)	1210, 1693
EcoNI	CCTNNNNNAGG	1 cut(s)	193
EcoO65I	GGTNACC	2 cut(s)	1210, 1693
EcoRI	GAATTC	1 cut(s)	2372
EcoRII	CCWGG	4 cut(s)	1071, 1593, 1958, 2035
EcoT14I	CCWWGG	2 cut(s)	257, 2215
EcoT22I	ATGCAT	1 cut(s)	1592
EcoT38I	GRGCYC	2 cut(s)	587, 1066
ErhI	CCWWGG	2 cut(s)	257, 2215
Esp3I	CGTCTC	1 cut(s)	1609
FalI	AAGNNNNNCTT	2 cut(s)	536, 568
FaqI	GGGAC	5 cut(s)	196, 507, 1054, 1911, 2104
FauI	CCCGC	2 cut(s)	533, 841
FbaI	TGATCA	5 cut(s)	1102, 1461, 1812, 2524, 2554
FblI	GTMKAC	1 cut(s)	2191
Fnu4HI	GCNGC	6 cut(s)	200, 399, 774, 1428, 1650, 2460
FokI	GGATG	9 cut(s)	219, 632, 701, 827, 1211, 1577, 1587, 1599, 2470
FriOI	GRGCYC	2 cut(s)	587, 1066
Fsp4HI	GCNGC	6 cut(s)	200, 399, 774, 1428, 1650, 2460
FspBI	CTAG	6 cut(s)	42, 278, 960, 1218, 1338, 2028
GlaI	GCGC	1 cut(s)	1621
GluI	GCNGC	6 cut(s)	200, 399, 774, 1428, 1650, 2460
GsaI	CCCAGC	1 cut(s)	755
GsuI	CTGGAG	2 cut(s)	157, 1022
HaeIII	GGCC	4 cut(s)	36, 162, 663, 1414
HapII	CCGG	2 cut(s)	667, 2330
HgaI	GACGC	2 cut(s)	1626, 1984
HhaI	GCGC	1 cut(s)	1622
Hin6I	GCGC	1 cut(s)	1620
HinP1I	GCGC	1 cut(s)	1620
HinfI	GANTC	9 cut(s)	139, 484, 1754, 2183, 2255, 2420, 2474, 2504, 2564
HpaII	CCGG	2 cut(s)	667, 2330
HphI	GGTGA	8 cut(s)	352, 661, 932, 1204, 1474, 1997, 2062, 2430
Hpy166II	GTNNAC	3 cut(s)	414, 1600, 2192
Hpy188I	TCNGA	7 cut(s)	72, 100, 877, 1102, 1516, 2392, 2629
Hpy8I	GTNNAC	3 cut(s)	414, 1600, 2192
HpyCH4III	ACNGT	8 cut(s)	112, 505, 759, 835, 1299, 1309, 1540, 1742
HpyCH4IV	ACGT	5 cut(s)	885, 1446, 2074, 2449, 2649
HpyF3I	CTNAG	8 cut(s)	29, 313, 783, 1065, 1416, 1913, 2091, 2571
HpySE526I	ACGT	5 cut(s)	885, 1446, 2074, 2449, 2649
HspAI	GCGC	1 cut(s)	1620
Ksp22I	TGATCA	5 cut(s)	1102, 1461, 1812, 2524, 2554
LmnI	GCTCC	6 cut(s)	83, 582, 911, 1961, 2043, 2485
Lsp1109I	GCAGC	5 cut(s)	385, 785, 1414, 1661, 2471
LweI	GCATC	7 cut(s)	667, 881, 1375, 1577, 1599, 1792, 2662
MaeI	CTAG	6 cut(s)	42, 278, 960, 1218, 1338, 2028
MaeII	ACGT	5 cut(s)	885, 1446, 2074, 2449, 2649
MaeIII	GTNAC	9 cut(s)	58, 131, 881, 1210, 1534, 1667, 1693, 2050, 2650
MbiI	CCGCTC	1 cut(s)	1983
MboII	GAAGA	6 cut(s)	544, 910, 913, 1394, 1592, 2330
MhlI	GDGCHC	3 cut(s)	587, 1066, 2080
MlsI	TGGCCA	1 cut(s)	663
MluNI	TGGCCA	1 cut(s)	663
MlyI	GAGTC	7 cut(s)	148, 493, 1748, 2192, 2429, 2483, 2558
MmeI	TCCRAC	3 cut(s)	1552, 2021, 2573
Mox20I	TGGCCA	1 cut(s)	663
Mph1103I	ATGCAT	1 cut(s)	1592
MroXI	GAANNNNTTC	1 cut(s)	2322
MscI	TGGCCA	1 cut(s)	663
MslI	CAYNNNNRTG	1 cut(s)	888
Msp20I	TGGCCA	1 cut(s)	663
MspA1I	CMGCKG	2 cut(s)	2095, 2462
MspI	CCGG	2 cut(s)	667, 2330
MspR9I	CCNGG	5 cut(s)	1073, 1595, 1960, 2037, 2330
Mva1269I	GAATGC	1 cut(s)	262
MvaI	CCWGG	4 cut(s)	1073, 1595, 1960, 2037
MvnI	CGCG	1 cut(s)	1620
NciI	CCSGG	1 cut(s)	2330
NmeAIII	GCCGAG	1 cut(s)	1390
NmuCI	GTSAC	6 cut(s)	131, 881, 1210, 1534, 1667, 2050
NsiI	ATGCAT	1 cut(s)	1592
NspI	RCATGY	2 cut(s)	612, 1427
PagI	TCATGA	1 cut(s)	1750
PaqCI	CACCTGC	1 cut(s)	1493
PctI	GAATGC	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	2322
PfeI	GAWTC	2 cut(s)	2255, 2504
PinAI	ACCGGT	1 cut(s)	666
PkrI	GCNGC	6 cut(s)	201, 400, 775, 1429, 1651, 2461
PleI	GAGTC	7 cut(s)	147, 492, 1748, 2191, 2428, 2482, 2558
PmaCI	CACGTG	1 cut(s)	2075
PmlI	CACGTG	1 cut(s)	2075
PpsI	GAGTC	7 cut(s)	147, 492, 1748, 2191, 2428, 2482, 2558
Ppu21I	YACGTR	1 cut(s)	2075
PshAI	GACNNNNGTC	1 cut(s)	138
PsiI	TTATAA	1 cut(s)	465
Psp6I	CCWGG	4 cut(s)	1071, 1593, 1958, 2035
PspCI	CACGTG	1 cut(s)	2075
PspEI	GGTNACC	2 cut(s)	1210, 1693
PspFI	CCCAGC	1 cut(s)	751
PspGI	CCWGG	4 cut(s)	1071, 1593, 1958, 2035
PspPI	GGNCC	4 cut(s)	34, 210, 414, 2219
PstI	CTGCAG	1 cut(s)	1651
PstNI	CAGNNNCTG	4 cut(s)	272, 779, 1307, 2462
PvuII	CAGCTG	2 cut(s)	2095, 2462
RsaI	GTAC	5 cut(s)	496, 735, 1392, 2067, 2355
RsaNI	GTAC	5 cut(s)	495, 734, 1391, 2066, 2354
RseI	CAYNNNNRTG	1 cut(s)	888
SatI	GCNGC	6 cut(s)	200, 399, 774, 1428, 1650, 2460
Sau96I	GGNCC	4 cut(s)	34, 210, 414, 2219
SchI	GAGTC	7 cut(s)	148, 493, 1748, 2192, 2429, 2483, 2558
ScrFI	CCNGG	5 cut(s)	1073, 1595, 1960, 2037, 2330
SduI	GDGCHC	3 cut(s)	587, 1066, 2080
SfaNI	GCATC	7 cut(s)	667, 881, 1375, 1577, 1599, 1792, 2662
SfcI	CTRYAG	1 cut(s)	1647
SinI	GGWCC	3 cut(s)	210, 414, 2219
SmiMI	CAYNNNNRTG	1 cut(s)	888
SmlI	CTYRAG	2 cut(s)	384, 767
SmoI	CTYRAG	2 cut(s)	384, 767
SsiI	CCGC	7 cut(s)	199, 526, 848, 1215, 1379, 1735, 1983
SspI	AATATT	1 cut(s)	2021
SspMI	CTAG	6 cut(s)	42, 278, 960, 1218, 1338, 2028
StyD4I	CCNGG	5 cut(s)	1071, 1593, 1958, 2035, 2328
StyI	CCWWGG	2 cut(s)	257, 2215
TaaI	ACNGT	8 cut(s)	112, 505, 759, 835, 1299, 1309, 1540, 1742
TaiI	ACGT	5 cut(s)	888, 1449, 2077, 2452, 2652
TaqI	TCGA	2 cut(s)	1000, 2347
TatI	WGTACW	2 cut(s)	2065, 2353
TauI	GCSGC	1 cut(s)	202
TfiI	GAWTC	2 cut(s)	2255, 2504
TscAI	CASTG	5 cut(s)	25, 170, 633, 1464, 1543
TseFI	GTSAC	6 cut(s)	131, 881, 1210, 1534, 1667, 2050
TseI	GCWGC	5 cut(s)	398, 773, 1427, 1649, 2459
Tsp45I	GTSAC	6 cut(s)	131, 881, 1210, 1534, 1667, 2050
TspRI	CASTG	5 cut(s)	25, 170, 633, 1464, 1543
VpaK11BI	GGWCC	3 cut(s)	210, 414, 2219
XagI	CCTNNNNNAGG	1 cut(s)	193
XapI	RAATTY	6 cut(s)	370, 1156, 1453, 1945, 2372, 2593
XbaI	TCTAGA	1 cut(s)	277
XceI	RCATGY	2 cut(s)	612, 1427
XmiI	GTMKAC	1 cut(s)	2191
XmnI	GAANNNNTTC	1 cut(s)	2322
XspI	CTAG	6 cut(s)	42, 278, 960, 1218, 1338, 2028
Zsp2I	ATGCAT	1 cut(s)	1592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.