Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001666

Physical Location & Seq

Genomic Coordinates Reverse (-)

37080884 .. 37091239

Gene Structure 10356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG330300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2730 bp

ATGTTGGCCAGTGGAAGTTTAGATAATACTATACATATCTGGAATATGAGCAATGGTATTTGCACTGCTGTTCTTAGGGGTCACTCTAGCCTGGTTAAAGGAGTTACTTGGGATCCCATTGGCTCGTTCATAGCAAGTCAATCAGACGATAAGACAGTAATTATTTGGAAGACAAGCGACTGGAGTCTTGCTCACAGGACTGACGGTCACTGGGCAAAATCACTTGGATCTACCTTTTTCAGGCGTCTTGGATGGTCACCTTGTGGTCACTTCATTACTACTACTCATGGATTCCAGAAACCAAGGCATTCAGCTCCTGTTCTTGAGAGAGGCGAATGGTCTGCCACATTTGACTTCCTAGGACATAATGCTCCTATAATCGTTGTGAAGTTTAACCATTCAATGTTTATGAGGAAGTTTACCAATGCTCAGGAAGGGAAAACTGCACCTGTGGGGTGGACTAATGGGGCTTCGAAGACAGGAGGGAAAGAACCACAACCTTATAATGTTATTGCAATTGGGAGTCAGGACCGAACAATAACTGTATGGACGACTGCAAGCCCACGTCCTCTATTTGTTGCAAAGCATTTCTTTACTCAAAGTGTTGTGGATTTGTCCTGGAGCCCTGATGGTTATTCGCTCTTTGCATGTTCTTTGGATGGTTCAGTGGCTACTTTCCATTTTGAGGTGAAAGAACTTGGTCACCGGTTAAGCGATGCAGAATTAGATGAGTTGAAGAGAAATCGTTATGGTGATGTTAGAGGACGGCAAGCAAACTTAGCTGAAAGCCCAGCACAGTTATTGCTTGAAGCAGCTTCTGCTAAGCAAGTGGCAAGCAAAAAGGTCTCTCTGGATGTGCAACAAAATCACACACTTGAGAAACCTTCTGCTCATGTGGGGGTTACAACAAAAGCTTCTGAGACTCAGCTTGCTGATATGAAAAAGAGTGGAGGTGCTGCTCCTGATTGTTTAAATAAAGTTTCGATGGCTACCCGAATATCTGGTCCTGTGAAGCAAAGAGAATATAGACGCCCTGATGGTAGAAAAAGGATTACTCCAGAAGCAGTTGGGGTGCCTTCCCAGCAGGAAAATATCTCTATGGGGGCTCAGTCCCAAGCACTTGACTTCCCTCCCATGTCTTCTGATCATAGGAAGGATGATAATGGTTTAGTTGTTGCTGATAGTGGCATTAGAGAAACTTCTTTCAGGGGAACACTTGGCCGAAACACTGATACAAAGGAAAGATATGGGGCCACTGCCAGAGCTATGATTACTGAAAGTCTGGTTATTGAGAAGGTTCCTGCTTCCACAAGCAGAGATGAAAGCATAAACGTGGAGCAAACAGGAAATGTGAAGGCGTGTAACTCAGTAGGCTCTAGTAGTTCTATTCTTTCAATCCGGGTGTTCGATAAGAAAGAATGGGAAGACACAGTGCCAATTTGTTTGGAAGCTCGACCTTGGGAACAAGCTGCAAATGATGTGTTTGGCATGGGAAATACATTTATTACGAAAGAAACTGAAATCACTTGCACAAGGGGGTTGCAAACTCTTTGGTCTGATAGGATATCTGGGAAAGTCACTGTTTTAGCTGGAAATGTAAACTTTTGGGCTGTTGGCTGTGAAGATGGTTGCGTACAGGTTTACACAAAGTGTGGGAGACGTGCTATGCCAACAATGATGGTAGGATCTGCTGCAATATTTATAGATTGTGATGAGTGCTGGAAGTTGTTTTTGGTCACAAAAAAAGGATCCTTGTATCTGTGGGATCTATTCACACGGAACTGTCTTCTTAATGACTCCTTGACATCTCTAGTTACTTCAATCCCAAACCCATCTGCAAAAGATGCAGGCATAATCAAAGTTATATCAGCAAAACTATCAAGATCTGGATCACCTATTGTTGTTCTTGCGACTCGTCATGCATTCCTCTTCGACATGGGCCTGATGTGTTGGCTTAGGGTTGCAGATGACTGCTTTCCTGGGTCAAATTTTGCAAGTTCTTGGAATTTAACTTCAACTCAGAGTGGCGAGCTGGCTGCATTGCAGGTTGATGTTAGGAAATATTTGGCCAGGAAGCCGGTTTGGAGCAGGGTGACTGATGATGGAGTACAGACACGTGCTCATTTGGAAGCTCAGTTGGCTTCTTCACTGGCTTTGAAGTCCCCTTCTGAATATCGCCAATGTCTCCTATCATACATACGCTTCCTTGCAAGAGAAGCAGATGAGTCCCGTTTGCGAGAAGTCTGTGAGAGTTTTCTTGGACCTCCTACTGGAATGATGGAAAATACATCTTTACATTCGAAGAACTTAGCATGGGATCCTTGTGTCCTTGGAATGAGGAAACATAAACTTTTACGAGAAGAAATTCTTCCAGCAATGGCTTCAAATAGGAAAGTACAACGATTGCTTAATGAATTCATGGATCTCATTTCCGAATATGAAAGTGTTGAAACAAATATAGAGAAAAAATCTCACGCTTCACCAACAGAGAATGCACCAGCAGCTGAATTAATGGACTCTTCCCCAACGGTGACAAATCAACTGAACTTGGTACCTGCACCAACAGATCAAACGAAGTCTGTTCATGCTTCAACTGATATAGTGGACTCCTCCCAGGTAGCATTAAATCAAGAAAATTCTGCTCCACTAGCTAAAGATAAATTTGATTCAGATCAACCACCACCAGTGATCGATCAAGTTAGTCTTACCTCACAAGATGCAGGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0030874 GO:0030875 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031497 GO:0031935 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0034622 GO:0034724 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044877 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060968 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0140110 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hira WD40

Protein Analysis

909

Amino Acids

99.78

Weight (kDa)

7.28

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	1 - 71	6.3e-14	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	1 - 120	8.3e-12	WDHD1 first WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	2 - 233	2.1e-21	CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3	PF25174	2 - 94	4e-13	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	2 - 73	1.5e-12	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	2 - 97	5.9e-08	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	3 - 67	3.5e-08	Prp19 WD40 domain
WD40	PF00400	20 - 56	2e-06	WD domain, G-beta repeat
Hira	PF07569	552 - 751	3.3e-49	TUP1-like enhancer of split

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44530 AT3G44530 AT3G44530 AT3G44530
fragaria_vesca	FvH4_3g24580 FvH4_3g24580 FvH4_3g24580 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610
malus_domestica	MD00G1078300.v1.1 MD10G1043400.v1.1
prunus_persica	Prupe.8G049500_v2.0.a1 Prupe.8G049500_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1
pyrus_communis	pycom05g03110 pycom10g03040
rosa_chinensis	RchiOBHm_Chr1g0317731 RchiOBHm_Chr5g0044121
rosa_laevigata	RLG00000030587 RLG00000034243 RLG00000034244
rosa_multiflora	Rmu_sc0000939.1_g000028 Rmu_sc0001158.1_g000004
rosa_roxburghii	Rroxscaffold_1G00036920 Rroxscaffold_4G00330210
rosa_rugosa	Rorug01G0016900.1 Rorug05G0210500 Rorug05G0210600
rosa_samantha	Rh1AG029200 Rh1BG025400 Rh1CG026500 Rh1DG044000 Rh5AG294700 Rh5BG303400 Rh5CG330300 Rh5DG312200
rosa_wichuraiana	Rw0G013170 Rw0G019570 Rw5G027330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	504
Acc36I	ACCTGC	3 cut(s)	2035, 2563, 2711
Acc65I	GGTACC	1 cut(s)	2551
AccB1I	GGYRCC	2 cut(s)	1072, 2551
AcoI	YGGCCR	3 cut(s)	6, 1219, 2067
AcsI	RAATTY	6 cut(s)	1987, 2005, 2364, 2414, 2635, 2660
AcvI	CACGTG	1 cut(s)	2117
AcyI	GRCGYC	2 cut(s)	244, 1030
AdeI	CACNNNGTG	2 cut(s)	263, 1650
AfaI	GTAC	4 cut(s)	1635, 2109, 2397, 2553
AfiI	CCNNNNNNNGG	3 cut(s)	240, 685, 2270
AflIII	ACRYGT	1 cut(s)	2114
AgeI	ACCGGT	1 cut(s)	705
AhdI	GACNNNNNGTC	1 cut(s)	204
AjiI	CACGTC	2 cut(s)	566, 1661
AjnI	CCWGG	5 cut(s)	90, 617, 1978, 2069, 2613
AjuI	GAANNNNNNNTTGG	2 cut(s)	1715, 1747
Alw21I	GWGCWC	1 cut(s)	2122
Alw26I	GTCTC	4 cut(s)	850, 914, 1651, 2189
AlwNI	CAGNNNCTG	3 cut(s)	317, 818, 2504
AoxI	GGCC	5 cut(s)	6, 1219, 1251, 1939, 2067
ApeKI	GCWGC	6 cut(s)	812, 956, 1469, 1691, 2036, 2501
ApoI	RAATTY	6 cut(s)	1987, 2005, 2364, 2414, 2635, 2660
ArsI	GACNNNNNNTTYG	2 cut(s)	988, 1020
AseI	ATTAAT	1 cut(s)	2510
AsiGI	ACCGGT	1 cut(s)	705
Asp700I	GAANNNNTTC	2 cut(s)	2364, 2367
Asp718I	GGTACC	1 cut(s)	2551
AspA2I	CCTAGG	1 cut(s)	358
AspS9I	GGNCC	5 cut(s)	529, 1004, 1251, 1939, 2261
AsuC2I	CCSGG	1 cut(s)	1400
AsuHPI	GGTGA	8 cut(s)	249, 695, 700, 764, 1884, 2104, 2472, 2542
AsuII	TTCGAA	2 cut(s)	473, 2300
AvaII	GGWCC	3 cut(s)	529, 1004, 2261
AvrII	CCTAGG	1 cut(s)	358
BalI	TGGCCA	2 cut(s)	8, 2069
BamHI	GGATCC	3 cut(s)	112, 1748, 2317
BanI	GGYRCC	2 cut(s)	1072, 2551
BanII	GRGCYC	2 cut(s)	626, 1108
BbrPI	CACGTG	1 cut(s)	2117
BbsI	GAAGAC	5 cut(s)	176, 482, 1131, 1431, 1778
Bbv12I	GWGCWC	1 cut(s)	2122
BbvI	GCAGC	6 cut(s)	824, 943, 1456, 1678, 2023, 2513
BceAI	ACGGC	1 cut(s)	782
BcgI	CGANNNNNNTGC	4 cut(s)	323, 357, 2018, 2052
BciT130I	CCWGG	5 cut(s)	92, 619, 1980, 2071, 2615
BclI	TGATCA	1 cut(s)	1144
BcnI	CCSGG	1 cut(s)	1400
BcoDI	GTCTC	4 cut(s)	850, 914, 1651, 2189
BfaI	CTAG	5 cut(s)	87, 359, 1377, 1811, 2648
BfuAI	ACCTGC	3 cut(s)	2035, 2563, 2711
BglII	AGATCT	1 cut(s)	1883
BisI	GCNGC	6 cut(s)	813, 957, 1470, 1692, 2037, 2502
BlnI	CCTAGG	1 cut(s)	358
BlpI	GCTNAGC	1 cut(s)	822
BlsI	GCNGC	6 cut(s)	814, 958, 1471, 1693, 2038, 2503
Bme1390I	CCNGG	6 cut(s)	92, 619, 1400, 1980, 2071, 2615
Bme18I	GGWCC	3 cut(s)	529, 1004, 2261
BmeRI	GACNNNNNGTC	1 cut(s)	204
BmgBI	CACGTC	2 cut(s)	566, 1661
BmgT120I	GGNCC	5 cut(s)	529, 1004, 1251, 1939, 2261
BmiI	GGNNCC	8 cut(s)	114, 623, 1074, 1252, 1299, 1750, 2319, 2553
BmrFI	CCNGG	6 cut(s)	92, 619, 1400, 1980, 2071, 2615
BmrI	ACTGGG	1 cut(s)	220
BmsI	GCATC	3 cut(s)	706, 1834, 2707
BmuI	ACTGGG	1 cut(s)	220
BoxI	GACNNNNGTC	1 cut(s)	183
BpiI	GAAGAC	5 cut(s)	176, 482, 1131, 1431, 1778
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
BpmI	CTGGAG	3 cut(s)	202, 640, 1041
Bpu10I	CCTNAGC	2 cut(s)	429, 1955
Bpu1102I	GCTNAGC	1 cut(s)	822
Bpu14I	TTCGAA	2 cut(s)	473, 2300
BpuEI	CTTGAG	2 cut(s)	344, 896
BpuMI	CCSGG	1 cut(s)	1400
Bsa29I	ATCGAT	1 cut(s)	2691
BsaAI	YACGTR	1 cut(s)	2117
BsaBI	GATNNNNATC	2 cut(s)	1888, 2670
BsaHI	GRCGYC	2 cut(s)	244, 1030
BsaI	GGTCTC	1 cut(s)	850
BsaJI	CCNNGG	6 cut(s)	302, 358, 1457, 1979, 2329, 2613
BsaWI	WCCGGW	1 cut(s)	705
Bsc4I	CCNNNNNNNGG	3 cut(s)	240, 685, 2270
Bse118I	RCCGGY	2 cut(s)	705, 2077
Bse1I	ACTGG	6 cut(s)	9, 185, 215, 2154, 2275, 2684
Bse3DI	GCAATG	3 cut(s)	58, 2039, 2382
Bse8I	GATNNNNATC	2 cut(s)	1888, 2670
BseBI	CCWGG	5 cut(s)	92, 619, 1980, 2071, 2615
BseCI	ATCGAT	1 cut(s)	2691
BseDI	CCNNGG	6 cut(s)	302, 358, 1457, 1979, 2329, 2613
BseGI	GGATG	4 cut(s)	257, 664, 859, 1162
BseJI	GATNNNNATC	2 cut(s)	1888, 2670
BseLI	CCNNNNNNNGG	3 cut(s)	240, 685, 2270
BseMI	GCAATG	3 cut(s)	58, 2039, 2382
BseMII	CTCAG	7 cut(s)	443, 909, 938, 1121, 1380, 2033, 2147
BseNI	ACTGG	6 cut(s)	9, 185, 215, 2154, 2275, 2684
BseRI	GAGGAG	1 cut(s)	2599
BseXI	GCAGC	6 cut(s)	824, 943, 1456, 1678, 2023, 2513
BseYI	CCCAGC	2 cut(s)	790, 1080
BsgI	GTGCAG	2 cut(s)	429, 2541
BshFI	GGCC	5 cut(s)	8, 1221, 1253, 1941, 2069
BshNI	GGYRCC	2 cut(s)	1072, 2551
BshTI	ACCGGT	1 cut(s)	705
BshVI	ATCGAT	1 cut(s)	2691
BsiHKAI	GWGCWC	1 cut(s)	2122
BsiSI	CCGG	3 cut(s)	706, 1399, 2078
BslFI	GGGAC	3 cut(s)	1096, 2146, 2212
BslI	CCNNNNNNNGG	3 cut(s)	240, 685, 2270
BsmAI	GTCTC	4 cut(s)	850, 914, 1651, 2189
BsmBI	CGTCTC	1 cut(s)	1651
BsmFI	GGGAC	3 cut(s)	1096, 2146, 2212
BsmI	GAATGC	3 cut(s)	307, 1922, 2497
BsnI	GGCC	5 cut(s)	8, 1221, 1253, 1941, 2069
Bso31I	GGTCTC	1 cut(s)	850
Bsp119I	TTCGAA	2 cut(s)	473, 2300
Bsp1286I	GDGCHC	3 cut(s)	626, 1108, 2122
Bsp1720I	GCTNAGC	1 cut(s)	822
BspANI	GGCC	5 cut(s)	8, 1221, 1253, 1941, 2069
BspCNI	CTCAG	7 cut(s)	442, 910, 937, 1120, 1379, 2032, 2146
BspDI	ATCGAT	1 cut(s)	2691
BspLI	GGNNCC	8 cut(s)	114, 623, 1074, 1252, 1299, 1750, 2319, 2553
BspMI	ACCTGC	3 cut(s)	2035, 2563, 2711
BspT104I	TTCGAA	2 cut(s)	473, 2300
BspT107I	GGYRCC	2 cut(s)	1072, 2551
BspTNI	GGTCTC	1 cut(s)	850
BsrDI	GCAATG	3 cut(s)	58, 2039, 2382
BsrFI	RCCGGY	2 cut(s)	705, 2077
BsrI	ACTGG	6 cut(s)	9, 185, 215, 2154, 2275, 2684
BssAI	RCCGGY	2 cut(s)	705, 2077
BssECI	CCNNGG	6 cut(s)	302, 358, 1457, 1979, 2329, 2613
BssNI	GRCGYC	2 cut(s)	244, 1030
BssT1I	CCWWGG	4 cut(s)	302, 358, 1457, 2329
Bst2UI	CCWGG	5 cut(s)	92, 619, 1980, 2071, 2615
Bst4CI	ACNGT	8 cut(s)	157, 206, 544, 798, 1432, 1582, 1784, 2530
Bst6I	CTCTTC	3 cut(s)	731, 1934, 2524
BstACI	GRCGYC	2 cut(s)	244, 1030
BstAPI	GCANNNNNTGC	2 cut(s)	818, 1844
BstBAI	YACGTR	1 cut(s)	2117
BstBI	TTCGAA	2 cut(s)	473, 2300
BstC8I	GCNNGC	7 cut(s)	559, 771, 835, 930, 1849, 2030, 2034
BstEII	GGTNACC	2 cut(s)	255, 701
BstENI	CCTNNNNNAGG	1 cut(s)	238
BstF5I	GGATG	4 cut(s)	257, 664, 859, 1162
BstMAI	GTCTC	4 cut(s)	850, 914, 1651, 2189
BstMWI	GCNNNNNNNGC	8 cut(s)	779, 818, 1081, 1844, 2138, 2216, 2501, 2648
BstNI	CCWGG	5 cut(s)	92, 619, 1980, 2071, 2615
BstNSI	RCATGY	1 cut(s)	651
BstPAI	GACNNNNGTC	1 cut(s)	183
BstPI	GGTNACC	2 cut(s)	255, 701
BstSCI	CCNGG	6 cut(s)	90, 617, 1398, 1978, 2069, 2613
BstV1I	GCAGC	6 cut(s)	824, 943, 1456, 1678, 2023, 2513
BstV2I	GAAGAC	5 cut(s)	176, 482, 1131, 1431, 1778
BstX2I	RGATCY	8 cut(s)	112, 227, 1685, 1748, 1765, 1883, 2317, 2422
BstYI	RGATCY	8 cut(s)	112, 227, 1685, 1748, 1765, 1883, 2317, 2422
Bsu15I	ATCGAT	1 cut(s)	2691
BsuRI	GGCC	5 cut(s)	8, 1221, 1253, 1941, 2069
BsuTUI	ATCGAT	1 cut(s)	2691
BtgZI	GCGATG	1 cut(s)	729
BtrI	CACGTC	2 cut(s)	566, 1661
BtsCI	GGATG	4 cut(s)	257, 664, 859, 1162
BtsI	GCAGTG	2 cut(s)	63, 1254
BveI	ACCTGC	3 cut(s)	2035, 2563, 2711
Cac8I	GCNNGC	7 cut(s)	559, 771, 835, 930, 1849, 2030, 2034
CaiI	CAGNNNCTG	3 cut(s)	317, 818, 2504
Cfr10I	RCCGGY	2 cut(s)	705, 2077
Cfr13I	GGNCC	5 cut(s)	529, 1004, 1251, 1939, 2261
ClaI	ATCGAT	1 cut(s)	2691
CseI	GACGC	2 cut(s)	233, 1038
Csp6I	GTAC	4 cut(s)	1634, 2108, 2396, 2552
CspAI	ACCGGT	1 cut(s)	705
CviQI	GTAC	4 cut(s)	1634, 2108, 2396, 2552
DraI	TTTAAA	1 cut(s)	972
DraIII	CACNNNGTG	2 cut(s)	263, 1650
DriI	GACNNNNNGTC	1 cut(s)	204
EaeI	YGGCCR	3 cut(s)	6, 1219, 2067
Eam1104I	CTCTTC	3 cut(s)	731, 1934, 2524
Eam1105I	GACNNNNNGTC	1 cut(s)	204
EarI	CTCTTC	3 cut(s)	731, 1934, 2524
Eco130I	CCWWGG	4 cut(s)	302, 358, 1457, 2329
Eco24I	GRGCYC	2 cut(s)	626, 1108
Eco31I	GGTCTC	1 cut(s)	850
Eco32I	GATATC	1 cut(s)	1566
Eco47I	GGWCC	3 cut(s)	529, 1004, 2261
Eco72I	CACGTG	1 cut(s)	2117
Eco91I	GGTNACC	2 cut(s)	255, 701
EcoNI	CCTNNNNNAGG	1 cut(s)	238
EcoO65I	GGTNACC	2 cut(s)	255, 701
EcoRI	GAATTC	1 cut(s)	2414
EcoRII	CCWGG	5 cut(s)	90, 617, 1978, 2069, 2613
EcoRV	GATATC	1 cut(s)	1566
EcoT14I	CCWWGG	4 cut(s)	302, 358, 1457, 2329
EcoT22I	ATGCAT	1 cut(s)	1924
EcoT38I	GRGCYC	2 cut(s)	626, 1108
ErhI	CCWWGG	4 cut(s)	302, 358, 1457, 2329
Esp3I	CGTCTC	1 cut(s)	1651
FalI	AAGNNNNNCTT	6 cut(s)	575, 607, 2352, 2384, 2688, 2720
FaqI	GGGAC	3 cut(s)	1096, 2146, 2212
FbaI	TGATCA	1 cut(s)	1144
Fnu4HI	GCNGC	6 cut(s)	813, 957, 1470, 1692, 2037, 2502
FokI	GGATG	4 cut(s)	264, 671, 866, 1169
FriOI	GRGCYC	2 cut(s)	626, 1108
Fsp4HI	GCNGC	6 cut(s)	813, 957, 1470, 1692, 2037, 2502
FspBI	CTAG	5 cut(s)	87, 359, 1377, 1811, 2648
GluI	GCNGC	6 cut(s)	813, 957, 1470, 1692, 2037, 2502
GsaI	CCCAGC	2 cut(s)	794, 1084
GsuI	CTGGAG	3 cut(s)	202, 640, 1041
HaeIII	GGCC	5 cut(s)	8, 1221, 1253, 1941, 2069
HapII	CCGG	3 cut(s)	706, 1399, 2078
HgaI	GACGC	2 cut(s)	233, 1038
Hin1I	GRCGYC	2 cut(s)	244, 1030
HindIII	AAGCTT	1 cut(s)	912
HpaII	CCGG	3 cut(s)	706, 1399, 2078
HphI	GGTGA	8 cut(s)	249, 695, 700, 764, 1884, 2104, 2472, 2542
Hpy166II	GTNNAC	5 cut(s)	420, 459, 1600, 1642, 2605
Hpy188I	TCNGA	8 cut(s)	145, 919, 1144, 1558, 2022, 2170, 2434, 2671
Hpy8I	GTNNAC	5 cut(s)	420, 459, 1600, 1642, 2605
HpyAV	CCTTC	7 cut(s)	428, 894, 1086, 1147, 1288, 1348, 2175
HpyCH4III	ACNGT	8 cut(s)	157, 206, 544, 798, 1432, 1582, 1784, 2530
HpyCH4IV	ACGT	4 cut(s)	565, 1332, 1660, 2116
HpyF10VI	GCNNNNNNNGC	8 cut(s)	779, 818, 1081, 1844, 2138, 2216, 2501, 2648
HpySE526I	ACGT	4 cut(s)	565, 1332, 1660, 2116
Hsp92I	GRCGYC	2 cut(s)	244, 1030
KpnI	GGTACC	1 cut(s)	2555
Ksp22I	TGATCA	1 cut(s)	1144
LmnI	GCTCC	7 cut(s)	319, 376, 621, 964, 1336, 2085, 2647
Lsp1109I	GCAGC	6 cut(s)	824, 943, 1456, 1678, 2023, 2513
LweI	GCATC	3 cut(s)	706, 1834, 2707
MaeI	CTAG	5 cut(s)	87, 359, 1377, 1811, 2648
MaeII	ACGT	4 cut(s)	565, 1332, 1660, 2116
MfeI	CAATTG	1 cut(s)	516
MflI	RGATCY	8 cut(s)	112, 227, 1685, 1748, 1765, 1883, 2317, 2422
MhlI	GDGCHC	3 cut(s)	626, 1108, 2122
MlsI	TGGCCA	2 cut(s)	8, 2069
MluNI	TGGCCA	2 cut(s)	8, 2069
MlyI	GAGTC	8 cut(s)	193, 532, 916, 1790, 1906, 2234, 2510, 2600
Mox20I	TGGCCA	2 cut(s)	8, 2069
Mph1103I	ATGCAT	1 cut(s)	1924
MroXI	GAANNNNTTC	2 cut(s)	2364, 2367
MscI	TGGCCA	2 cut(s)	8, 2069
MslI	CAYNNNNRTG	1 cut(s)	1331
Msp20I	TGGCCA	2 cut(s)	8, 2069
MspA1I	CMGCKG	1 cut(s)	2504
MspI	CCGG	3 cut(s)	706, 1399, 2078
MspR9I	CCNGG	6 cut(s)	92, 619, 1400, 1980, 2071, 2615
MunI	CAATTG	1 cut(s)	516
Mva1269I	GAATGC	3 cut(s)	307, 1922, 2497
MvaI	CCWGG	5 cut(s)	92, 619, 1980, 2071, 2615
MwoI	GCNNNNNNNGC	8 cut(s)	779, 818, 1081, 1844, 2138, 2216, 2501, 2648
NciI	CCSGG	1 cut(s)	1400
NlaIV	GGNNCC	8 cut(s)	114, 623, 1074, 1252, 1299, 1750, 2319, 2553
NmuCI	GTSAC	9 cut(s)	80, 206, 255, 266, 701, 1576, 1735, 2092, 2530
NsiI	ATGCAT	1 cut(s)	1924
NspI	RCATGY	1 cut(s)	651
NspV	TTCGAA	2 cut(s)	473, 2300
PctI	GAATGC	3 cut(s)	307, 1922, 2497
PdmI	GAANNNNTTC	2 cut(s)	2364, 2367
PfeI	GAWTC	2 cut(s)	291, 2666
PfoI	TCCNGGA	1 cut(s)	617
PinAI	ACCGGT	1 cut(s)	705
PkrI	GCNGC	6 cut(s)	814, 958, 1471, 1693, 2038, 2503
PleI	GAGTC	8 cut(s)	192, 531, 916, 1790, 1906, 2233, 2510, 2600
PmaCI	CACGTG	1 cut(s)	2117
PmlI	CACGTG	1 cut(s)	2117
PpsI	GAGTC	8 cut(s)	192, 531, 916, 1790, 1906, 2233, 2510, 2600
Ppu21I	YACGTR	1 cut(s)	2117
PshAI	GACNNNNGTC	1 cut(s)	183
PshBI	ATTAAT	1 cut(s)	2510
PsiI	TTATAA	1 cut(s)	504
Psp6I	CCWGG	5 cut(s)	90, 617, 1978, 2069, 2613
PspCI	CACGTG	1 cut(s)	2117
PspEI	GGTNACC	2 cut(s)	255, 701
PspFI	CCCAGC	2 cut(s)	790, 1080
PspGI	CCWGG	5 cut(s)	90, 617, 1978, 2069, 2613
PspN4I	GGNNCC	8 cut(s)	114, 623, 1074, 1252, 1299, 1750, 2319, 2553
PspPI	GGNCC	5 cut(s)	529, 1004, 1251, 1939, 2261
PstNI	CAGNNNCTG	3 cut(s)	317, 818, 2504
PsuI	RGATCY	8 cut(s)	112, 227, 1685, 1748, 1765, 1883, 2317, 2422
PvuII	CAGCTG	1 cut(s)	2504
RsaI	GTAC	4 cut(s)	1635, 2109, 2397, 2553
RsaNI	GTAC	4 cut(s)	1634, 2108, 2396, 2552
RseI	CAYNNNNRTG	1 cut(s)	1331
SatI	GCNGC	6 cut(s)	813, 957, 1470, 1692, 2037, 2502
Sau96I	GGNCC	5 cut(s)	529, 1004, 1251, 1939, 2261
SchI	GAGTC	8 cut(s)	193, 532, 916, 1790, 1906, 2234, 2510, 2600
ScrFI	CCNGG	6 cut(s)	92, 619, 1400, 1980, 2071, 2615
SduI	GDGCHC	3 cut(s)	626, 1108, 2122
SfaNI	GCATC	3 cut(s)	706, 1834, 2707
SfuI	TTCGAA	2 cut(s)	473, 2300
SinI	GGWCC	3 cut(s)	529, 1004, 2261
SmiMI	CAYNNNNRTG	1 cut(s)	1331
SmlI	CTYRAG	2 cut(s)	323, 875
SmoI	CTYRAG	2 cut(s)	323, 875
SspI	AATATT	2 cut(s)	1698, 2063
SspMI	CTAG	5 cut(s)	87, 359, 1377, 1811, 2648
StyD4I	CCNGG	6 cut(s)	90, 617, 1398, 1978, 2069, 2613
StyI	CCWWGG	4 cut(s)	302, 358, 1457, 2329
TaaI	ACNGT	8 cut(s)	157, 206, 544, 798, 1432, 1582, 1784, 2530
TaiI	ACGT	4 cut(s)	568, 1335, 1663, 2119
TaqI	TCGA	7 cut(s)	473, 983, 1407, 1453, 1932, 2300, 2691
TaqII	GACCGA	1 cut(s)	546
TatI	WGTACW	2 cut(s)	2107, 2395
TfiI	GAWTC	2 cut(s)	291, 2666
TseFI	GTSAC	9 cut(s)	80, 206, 255, 266, 701, 1576, 1735, 2092, 2530
TseI	GCWGC	6 cut(s)	812, 956, 1469, 1691, 2036, 2501
Tsp45I	GTSAC	9 cut(s)	80, 206, 255, 266, 701, 1576, 1735, 2092, 2530
TspDTI	ATGAA	8 cut(s)	118, 262, 953, 1335, 2407, 2427, 2454, 2573
TspGWI	ACGGA	1 cut(s)	1792
VpaK11BI	GGWCC	3 cut(s)	529, 1004, 2261
VspI	ATTAAT	1 cut(s)	2510
XagI	CCTNNNNNAGG	1 cut(s)	238
XapI	RAATTY	6 cut(s)	1987, 2005, 2364, 2414, 2635, 2660
XceI	RCATGY	1 cut(s)	651
XmaJI	CCTAGG	1 cut(s)	358
XmnI	GAANNNNTTC	2 cut(s)	2364, 2367
XspI	CTAG	5 cut(s)	87, 359, 1377, 1811, 2648
Zsp2I	ATGCAT	1 cut(s)	1924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.