Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001666

Physical Location & Seq

Genomic Coordinates Reverse (-)

39318570 .. 39321671

Gene Structure 3102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034243

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGGCCTGATGTGTTGGCTTAGGGTTGCAGATGACTGCTTTCCTGGGTCAAATTTTGCAAGCTCCTGGAATTTAACTTCAACTCAGAGTGGTGAGCTGGCTGCATTGCAGGTTGATGTTAGGAAATATTTGGCCAGGAAGCCGGTTTGGAGCAGGGTGACTGATGACGGAGTACAGACACGTGCTCATTTGGAAGCTCAGTTGGCTTCTTCACTGGCTTTGAAGTCCCCTTCCGAATATCGCCAATGTCTCCTATCATACATACGCTTCCTTGCAAGAGAAGCAGATGAGTCCCGTTTGCGAGAAGTCTGTGAGAGTTTTCTTGGACCTCCTACTGGGATGATGGACAATACATCTTTACATTCGAAGAACTTAGCATGGGATCCTTGTGTCCTTGGAATGGGGAAACATAAACTTTTACGAGAAGACATTCTTCCAGCAATGGCTTCAAATAGGAAAGTACAACGACTGCTTAATGAATTCATGGATCTCATTTCCGAATATGAGAGTGTTGAAACACATATAGAGAAAAAATCTCATGCTTCACCGACAGAGAATGCACCAGCAGCTGAATTAATGGACTCTTCCCCAACGGTGACAAATCAACTGAACTTGGTATCTGCACCAACAGATCAAATGAAGTCTGTTCATGCTTCAACAGATATAGTGGACTCCTCCCAGGTAGCATTAAATCAAGAAAATTCTGCTCCACTAGCTAAAGATAAATTTGATTCAGATCAACCACCACCAGCGATCGATCAAGTTAGTCTTACCTCACAAGATGCAGGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0030874 GO:0030875 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031497 GO:0031935 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0034622 GO:0034724 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044877 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060968 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0140110 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hira WD40

Protein Analysis

265

Amino Acids

29.07

Weight (kDa)

5.08

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hira	PF07569	3 - 106	5.3e-21	TUP1-like enhancer of split

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44530 AT3G44530 AT3G44530 AT3G44530
fragaria_vesca	FvH4_3g24580 FvH4_3g24580 FvH4_3g24580 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610 FvH4_7g01610
malus_domestica	MD00G1078300.v1.1 MD10G1043400.v1.1
prunus_persica	Prupe.8G049500_v2.0.a1 Prupe.8G049500_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1 Prupe.8G049600_v2.0.a1
pyrus_communis	pycom05g03110 pycom10g03040
rosa_chinensis	RchiOBHm_Chr1g0317731 RchiOBHm_Chr5g0044121
rosa_laevigata	RLG00000030587 RLG00000034243 RLG00000034244
rosa_multiflora	Rmu_sc0000939.1_g000028 Rmu_sc0001158.1_g000004
rosa_roxburghii	Rroxscaffold_1G00036920 Rroxscaffold_4G00330210
rosa_rugosa	Rorug01G0016900.1 Rorug05G0210500 Rorug05G0210600
rosa_samantha	Rh1AG029200 Rh1BG025400 Rh1CG026500 Rh1DG044000 Rh5AG294700 Rh5BG303400 Rh5CG330300 Rh5DG312200
rosa_wichuraiana	Rw0G013170 Rw0G019570 Rw5G027330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	100, 776
AclWI	GGATC	3 cut(s)	377, 390, 495
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	5 cut(s)	52, 70, 479, 700, 725
AcvI	CACGTG	1 cut(s)	182
AfaI	GTAC	2 cut(s)	174, 462
AfiI	CCNNNNNNNGG	2 cut(s)	335, 400
AflIII	ACRYGT	1 cut(s)	179
AgsI	TTSAA	5 cut(s)	81, 223, 450, 515, 657
AjnI	CCWGG	4 cut(s)	43, 65, 134, 678
AluBI	AGCT	5 cut(s)	63, 97, 197, 569, 716
AluI	AGCT	5 cut(s)	63, 97, 197, 569, 716
Alw21I	GWGCWC	1 cut(s)	187
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	3 cut(s)	377, 390, 495
AlwNI	CAGNNNCTG	1 cut(s)	569
AoxI	GGCC	2 cut(s)	4, 132
ApeKI	GCWGC	2 cut(s)	101, 566
ApoI	RAATTY	5 cut(s)	52, 70, 479, 700, 725
AseI	ATTAAT	1 cut(s)	575
Asp700I	GAANNNNTTC	1 cut(s)	429
AspS9I	GGNCC	2 cut(s)	4, 326
AsuHPI	GGTGA	4 cut(s)	104, 169, 537, 607
AsuII	TTCGAA	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	326
BalI	TGGCCA	1 cut(s)	134
BamHI	GGATCC	1 cut(s)	382
BbrPI	CACGTG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	187
BbvI	GCAGC	2 cut(s)	88, 578
BccI	CCATC	1 cut(s)	337
BciT130I	CCWGG	4 cut(s)	45, 67, 136, 680
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	1 cut(s)	713
BfuAI	ACCTGC	2 cut(s)	100, 776
BisI	GCNGC	2 cut(s)	102, 567
BlsI	GCNGC	2 cut(s)	103, 568
Bme1390I	CCNGG	4 cut(s)	45, 67, 136, 680
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	2 cut(s)	4, 326
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	4 cut(s)	45, 67, 136, 680
BmrI	ACTGGG	1 cut(s)	345
BmsI	GCATC	1 cut(s)	772
BmuI	ACTGGG	1 cut(s)	345
BpiI	GAAGAC	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	20
Bpu14I	TTCGAA	1 cut(s)	365
Bsa29I	ATCGAT	1 cut(s)	756
BsaAI	YACGTR	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	735
BsaJI	CCNNGG	3 cut(s)	44, 394, 678
Bsc4I	CCNNNNNNNGG	2 cut(s)	335, 400
Bse118I	RCCGGY	1 cut(s)	142
Bse1I	ACTGG	2 cut(s)	219, 340
Bse3DI	GCAATG	2 cut(s)	104, 447
Bse8I	GATNNNNATC	1 cut(s)	735
BseBI	CCWGG	4 cut(s)	45, 67, 136, 680
BseCI	ATCGAT	1 cut(s)	756
BseDI	CCNNGG	3 cut(s)	44, 394, 678
BseGI	GGATG	1 cut(s)	345
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	2 cut(s)	335, 400
BseMI	GCAATG	2 cut(s)	104, 447
BseMII	CTCAG	2 cut(s)	98, 212
BseNI	ACTGG	2 cut(s)	219, 340
BseRI	GAGGAG	1 cut(s)	664
BseXI	GCAGC	2 cut(s)	88, 578
BsgI	GTGCAG	1 cut(s)	606
Bsh1285I	CGRYCG	1 cut(s)	756
BshFI	GGCC	2 cut(s)	6, 134
BshVI	ATCGAT	1 cut(s)	756
BsiEI	CGRYCG	1 cut(s)	756
BsiHKAI	GWGCWC	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	143
BslFI	GGGAC	2 cut(s)	211, 277
BslI	CCNNNNNNNGG	2 cut(s)	335, 400
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	2 cut(s)	211, 277
BsmI	GAATGC	1 cut(s)	562
BsnI	GGCC	2 cut(s)	6, 134
Bsp119I	TTCGAA	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	6 cut(s)	382, 487, 631, 736, 753, 757
BspANI	GGCC	2 cut(s)	6, 134
BspCNI	CTCAG	2 cut(s)	97, 211
BspDI	ATCGAT	1 cut(s)	756
BspLI	GGNNCC	1 cut(s)	384
BspMI	ACCTGC	2 cut(s)	100, 776
BspPI	GGATC	3 cut(s)	377, 390, 495
BspT104I	TTCGAA	1 cut(s)	365
BsrDI	GCAATG	2 cut(s)	104, 447
BsrFI	RCCGGY	1 cut(s)	142
BsrI	ACTGG	2 cut(s)	219, 340
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	3 cut(s)	44, 394, 678
BssMI	GATC	6 cut(s)	382, 487, 631, 736, 753, 757
BssT1I	CCWWGG	1 cut(s)	394
Bst2UI	CCWGG	4 cut(s)	45, 67, 136, 680
Bst4CI	ACNGT	1 cut(s)	595
Bst6I	CTCTTC	1 cut(s)	589
BstBAI	YACGTR	1 cut(s)	182
BstBI	TTCGAA	1 cut(s)	365
BstC8I	GCNNGC	2 cut(s)	61, 99
BstDEI	CTNAG	4 cut(s)	20, 84, 198, 373
BstF5I	GGATG	1 cut(s)	345
BstKTI	GATC	6 cut(s)	385, 490, 634, 739, 756, 760
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	6 cut(s)	382, 487, 631, 736, 753, 757
BstMCI	CGRYCG	1 cut(s)	756
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 281, 566, 713
BstNI	CCWGG	4 cut(s)	45, 67, 136, 680
BstSCI	CCNGG	4 cut(s)	43, 65, 134, 678
BstV1I	GCAGC	2 cut(s)	88, 578
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	2 cut(s)	382, 487
BstYI	RGATCY	2 cut(s)	382, 487
Bsu15I	ATCGAT	1 cut(s)	756
BsuRI	GGCC	2 cut(s)	6, 134
BsuTUI	ATCGAT	1 cut(s)	756
BtsCI	GGATG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	212
BveI	ACCTGC	2 cut(s)	100, 776
Cac8I	GCNNGC	2 cut(s)	61, 99
CaiI	CAGNNNCTG	1 cut(s)	569
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	2 cut(s)	4, 326
ClaI	ATCGAT	1 cut(s)	756
Csp6I	GTAC	2 cut(s)	173, 461
CviAII	CATG	4 cut(s)	378, 484, 539, 650
CviQI	GTAC	2 cut(s)	173, 461
DdeI	CTNAG	4 cut(s)	20, 84, 198, 373
DpnI	GATC	6 cut(s)	384, 489, 633, 738, 755, 759
DpnII	GATC	6 cut(s)	382, 487, 631, 736, 753, 757
EaeI	YGGCCR	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	589
EarI	CTCTTC	1 cut(s)	589
Eco130I	CCWWGG	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	326
Eco72I	CACGTG	1 cut(s)	182
EcoRI	GAATTC	1 cut(s)	479
EcoRII	CCWGG	4 cut(s)	43, 65, 134, 678
EcoT14I	CCWWGG	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	4 cut(s)	381, 487, 542, 653
FalI	AAGNNNNNCTT	4 cut(s)	417, 449, 753, 785
FaqI	GGGAC	2 cut(s)	211, 277
FatI	CATG	4 cut(s)	377, 483, 538, 649
Fnu4HI	GCNGC	2 cut(s)	102, 567
FokI	GGATG	1 cut(s)	352
Fsp4HI	GCNGC	2 cut(s)	102, 567
FspBI	CTAG	1 cut(s)	713
GluI	GCNGC	2 cut(s)	102, 567
HaeIII	GGCC	2 cut(s)	6, 134
HapII	CCGG	1 cut(s)	143
Hin1II	CATG	4 cut(s)	381, 487, 542, 653
HinfI	GANTC	4 cut(s)	290, 581, 671, 731
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	4 cut(s)	104, 169, 537, 607
Hpy166II	GTNNAC	1 cut(s)	670
Hpy188I	TCNGA	4 cut(s)	87, 235, 499, 736
Hpy188III	TCNNGA	1 cut(s)	695
Hpy8I	GTNNAC	1 cut(s)	670
HpyAV	CCTTC	1 cut(s)	240
HpyCH4III	ACNGT	1 cut(s)	595
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	8 cut(s)	29, 59, 104, 109, 275, 560, 623, 785
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 281, 566, 713
HpyF3I	CTNAG	4 cut(s)	20, 84, 198, 373
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	4 cut(s)	381, 487, 542, 653
Kzo9I	GATC	6 cut(s)	382, 487, 631, 736, 753, 757
LmnI	GCTCC	3 cut(s)	68, 150, 712
Lsp1109I	GCAGC	2 cut(s)	88, 578
LweI	GCATC	1 cut(s)	772
MaeI	CTAG	1 cut(s)	713
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	2 cut(s)	157, 595
MalI	GATC	6 cut(s)	384, 489, 633, 738, 755, 759
MboI	GATC	6 cut(s)	382, 487, 631, 736, 753, 757
MboII	GAAGA	5 cut(s)	201, 379, 425, 437, 576
MflI	RGATCY	2 cut(s)	382, 487
MhlI	GDGCHC	1 cut(s)	187
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	6 cut(s)	52, 70, 479, 572, 700, 725
MluNI	TGGCCA	1 cut(s)	134
MlyI	GAGTC	3 cut(s)	299, 575, 665
MnlI	CCTC	3 cut(s)	339, 685, 784
Mox20I	TGGCCA	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	429
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	5 cut(s)	74, 474, 575, 689, 793
Msp20I	TGGCCA	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	4 cut(s)	45, 67, 136, 680
Mva1269I	GAATGC	1 cut(s)	562
MvaI	CCWGG	4 cut(s)	45, 67, 136, 680
MwoI	GCNNNNNNNGC	4 cut(s)	203, 281, 566, 713
NdeII	GATC	6 cut(s)	382, 487, 631, 736, 753, 757
NlaIII	CATG	4 cut(s)	381, 487, 542, 653
NlaIV	GGNNCC	1 cut(s)	384
NmuCI	GTSAC	2 cut(s)	157, 595
NspV	TTCGAA	1 cut(s)	365
PctI	GAATGC	1 cut(s)	562
PdmI	GAANNNNTTC	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	731
PfoI	TCCNGGA	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	103, 568
Ple19I	CGATCG	1 cut(s)	756
PleI	GAGTC	3 cut(s)	298, 575, 665
PmaCI	CACGTG	1 cut(s)	182
PmlI	CACGTG	1 cut(s)	182
PpsI	GAGTC	3 cut(s)	298, 575, 665
Ppu21I	YACGTR	1 cut(s)	182
PshBI	ATTAAT	1 cut(s)	575
Psp6I	CCWGG	4 cut(s)	43, 65, 134, 678
PspCI	CACGTG	1 cut(s)	182
PspGI	CCWGG	4 cut(s)	43, 65, 134, 678
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	2 cut(s)	4, 326
PstNI	CAGNNNCTG	1 cut(s)	569
PsuI	RGATCY	2 cut(s)	382, 487
PvuI	CGATCG	1 cut(s)	756
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	2 cut(s)	174, 462
RsaNI	GTAC	2 cut(s)	173, 461
SaqAI	TTAA	5 cut(s)	74, 474, 575, 689, 793
SatI	GCNGC	2 cut(s)	102, 567
Sau3AI	GATC	6 cut(s)	382, 487, 631, 736, 753, 757
Sau96I	GGNCC	2 cut(s)	4, 326
SchI	GAGTC	3 cut(s)	299, 575, 665
ScrFI	CCNGG	4 cut(s)	45, 67, 136, 680
SduI	GDGCHC	1 cut(s)	187
SfaNI	GCATC	1 cut(s)	772
SfuI	TTCGAA	1 cut(s)	365
SinI	GGWCC	1 cut(s)	326
Sse9I	AATT	6 cut(s)	52, 70, 479, 572, 700, 725
SspI	AATATT	1 cut(s)	128
SspMI	CTAG	1 cut(s)	713
StyD4I	CCNGG	4 cut(s)	43, 65, 134, 678
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	1 cut(s)	595
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	2 cut(s)	365, 756
TasI	AATT	6 cut(s)	52, 70, 479, 572, 700, 725
TatI	WGTACW	2 cut(s)	172, 460
TfiI	GAWTC	1 cut(s)	731
Tru1I	TTAA	5 cut(s)	74, 474, 575, 689, 793
Tru9I	TTAA	5 cut(s)	74, 474, 575, 689, 793
TscAI	CASTG	1 cut(s)	219
TseFI	GTSAC	2 cut(s)	157, 595
TseI	GCWGC	2 cut(s)	101, 566
Tsp45I	GTSAC	2 cut(s)	157, 595
TspDTI	ATGAA	4 cut(s)	472, 492, 638, 653
TspGWI	ACGGA	1 cut(s)	183
TspRI	CASTG	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	326
VspI	ATTAAT	1 cut(s)	575
XapI	RAATTY	5 cut(s)	52, 70, 479, 700, 725
XmnI	GAANNNNTTC	1 cut(s)	429
XspI	CTAG	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.