FvH4_7g02270

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
2616434 .. 2621768
5335 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g02270.t1

Sequence Viewer

Length: 1878 bp
ATGAGAACGTTAAGGAGATACAAGGAAGGATTGTGTATCAGAATCACTGCTCAGATATATTGTAGAGCATTCTCAGCCATTAGCAATGCTAAAGCTGATAGATCCAGAGACCAAGAATGCCTTGTTTCGTTGGGCACAAGTGCCACTCAGTTATCACTTTTACATCAAATCTTGCAAAGCAGTGCAGGAAAAGGTGCACCTATGGAAGGAAAGGCCTGTCATGCACAGAGTATTCGTGTTGGATTACAATCAGACACTTTAACATCGAACATGCTTATTAACATGTATGCAAAATGTGGCTTACATAATTGTGCGAGAAAAGTATTTAATGAAATGCCTGAAAGGAGCTTAGTTTCATGGAATACTATGATCGGGTCACTTGCCCGGAGTGGGGAGGAACATGAAGCTCTTAGTGTTTTTGTATGCATGCAAAGAGAAGAAAACCAATTTAGTGAATTCACTGTTTCGAGTGTTCTGTCTGCTTGTGCCGCGAAAAGTCTTGTGTCTGAGTGTAAACAGCTGCATGCTTTTGCTTTTAAGGCAGCTATGGTCTTGAATGTCTATGTGGGGACTGCATTGCTTGACGTTTATTCAAAGGCTGGTTTGATAAAGGATGCAAGTTTTGTCTTTGAATCGATGCCAGAGAGGAGTGATGTCACATGGAGTTCAATGGTTGCCGGGTATGTGCTAAATGGGCTTTATGAGGAGGCTGTGCTGTTGTTCCACAGAGCTCGGATGATAGGATTAGAACATAACCAGTTTACAATCTCTTCTGCTATTTGTGCTTGTGCAGGCCTAGCAGCTTTGATAGAAGGGAAGCAGGTGCATGCCTTGTTGTTTAAAACTGGATTTAGATTAAATATATATATCGTTTCCTCTTTGATAGATATGTATTCAAAATGTGGTAGCATTGAAGAAGCTTACACCATGTTTCAAGATATGGAGGACAGGAACACTGTTCTGTGGAATGCCATGATTTCTGGGTTTTCTAGACATGCTTGCTCCCTAGAGGTGATGATCTTATTTGAGAAGATGCAGCAGGCAGGCATGCTCCCAAGTGAAGTAGCGTATATATCTGTATTAACTGCTTGTAGTCATATGGGATTGGTTGAAAGTGGAAAGAAGTATTTCAACCTCATGATAACAGAACACAACGTGTCCCCAAATGTTGTTCACTATGCATGCATGGTTGATATTTTTGGTCGGTCAGGGTTGATTCTTGAAGCCCATAATTTGATAGAGGATATGCCATTTGAGGCTACTGCTTCTATGTGGGGTTCTCTGTTAGCTTCTTGTAGGATCCATGGAAATTTAGATTTAGCTGAGATAGCAGCTAAACATTTGTCTGAAATAGAACCGAACAATGCAGGGAACCTCATTTTGTTGTCAAATATTTATGCAGCAAATAATAAGTGGGAGGAGGTTGCACGAACAAGGAAGCTTCTTAAAGAAAGTGAGTTGAAGAAGGAGAGAGGGAAGAGTTGGATTGAAATCAAGGACAAAGTTCACTCATTTATGGTTGGAGAGAGAGCACATCCTAGAATTGCTGAGATATACTCTAAGTTAGACCAATTGGTGGAAAAATTAAGGACGATGGGTTACAAGGCTGAGATTGCACATGATCTTCATTATGTCGAAGAGAGCAAAAAAGATGAACTTCTGAGGCACCATAGTGAAAAACTGGCTCTGACTTTTGGTTTGATGTGCTTACCCTCCAATGCACCTATCAGGATCATGAAAAATCTTAGGATTTGTGGGGATTGCCATTCTTTTATGAAGATTGCATCACGTTGTTTGGGGAGGGAAATCATTGTCAGGGATACTAAAAGGTTTCACCATTTCAAGAATGGTTTTTGCTCTTGTCGGGAATTTTGGTGA

Protein Analysis

626

Amino Acids

70.15

Weight (kDa)

8.12

Isoelectric Point (pI)

50.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 116 - 163 3.2e-06 PPR repeat family
PPR PF01535 118 - 146 5.8e-06 PPR repeat
PPR_2 PF13041 317 - 365 3.3e-07 PPR repeat family
E_motif PF20431 435 - 497 4.5e-20 E motif
DYW_deaminase PF14432 533 - 625 1.5e-37 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 811
Acc36I ACCTGC 1 cut(s) 811
AccB1I GGYRCC 1 cut(s) 1665
AccB7I CCANNNNNTGG 1 cut(s) 1576
AccII CGCG 1 cut(s) 491
AciI CCGC 1 cut(s) 489
AclI AACGTT 1 cut(s) 8
AclWI GGATC 4 cut(s) 96, 1294, 1307, 1739
AcsI RAATTY 3 cut(s) 455, 1309, 1868
AdeI CACNNNGTG 1 cut(s) 1156
AfiI CCNNNNNNNGG 4 cut(s) 206, 390, 391, 1576
AflIII ACRYGT 2 cut(s) 282, 1155
AleI CACNNNNGTG 1 cut(s) 1671
Alw21I GWGCWC 3 cut(s) 199, 733, 1534
Alw26I GTCTC 1 cut(s) 102
Alw44I GTGCAC 1 cut(s) 195
AlwI GGATC 4 cut(s) 96, 1294, 1307, 1739
AoxI GGCC 2 cut(s) 213, 793
ApaLI GTGCAC 1 cut(s) 195
ApeKI GCWGC 6 cut(s) 520, 542, 800, 1036, 1331, 1400
ApoI RAATTY 3 cut(s) 455, 1309, 1868
ArsI GACNNNNNNTTYG 2 cut(s) 1681, 1713
Asp700I GAANNNNTTC 1 cut(s) 1127
AsuC2I CCSGG 2 cut(s) 385, 679
AsuHPI GGTGA 2 cut(s) 1024, 1826
BaeGI GKGCMC 2 cut(s) 137, 199
BamHI GGATCC 1 cut(s) 1299
BanI GGYRCC 1 cut(s) 1665
BanII GRGCYC 1 cut(s) 733
Bbv12I GWGCWC 3 cut(s) 199, 733, 1534
BbvI GCAGC 6 cut(s) 507, 554, 812, 1048, 1343, 1412
BccI CCATC 1 cut(s) 1588
BciVI GTATCC 1 cut(s) 1813
BcnI CCSGG 2 cut(s) 385, 679
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 4 cut(s) 797, 990, 1007, 1539
BfuAI ACCTGC 1 cut(s) 811
BfuI GTATCC 1 cut(s) 1813
BisI GCNGC 7 cut(s) 489, 521, 543, 801, 1037, 1332, 1401
BlsI GCNGC 7 cut(s) 490, 522, 544, 802, 1038, 1333, 1402
Bme1390I CCNGG 2 cut(s) 385, 679
BmiI GGNNCC 3 cut(s) 1301, 1373, 1667
BmrFI CCNGG 2 cut(s) 385, 679
BmsI GCATC 4 cut(s) 604, 627, 1023, 1793
BplI GAGNNNNNCTC 2 cut(s) 1541, 1573
BpuMI CCSGG 2 cut(s) 385, 679
Bsa29I ATCGAT 1 cut(s) 635
BsaBI GATNNNNATC 2 cut(s) 247, 1490
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 1303
Bsc4I CCNNNNNNNGG 4 cut(s) 206, 390, 391, 1576
Bse1I ACTGG 3 cut(s) 757, 850, 1686
Bse3DI GCAATG 2 cut(s) 91, 575
Bse8I GATNNNNATC 2 cut(s) 247, 1490
BseCI ATCGAT 1 cut(s) 635
BseDI CCNNGG 1 cut(s) 1303
BseGI GGATG 3 cut(s) 619, 741, 1534
BseJI GATNNNNATC 2 cut(s) 247, 1490
BseLI CCNNNNNNNGG 4 cut(s) 206, 390, 391, 1576
BseMI GCAATG 2 cut(s) 91, 575
BseMII CTCAG 8 cut(s) 65, 87, 161, 498, 1314, 1539, 1599, 1652
BseNI ACTGG 3 cut(s) 757, 850, 1686
BseRI GAGGAG 3 cut(s) 661, 719, 1433
BseSI GKGCMC 2 cut(s) 137, 199
BseXI GCAGC 6 cut(s) 507, 554, 812, 1048, 1343, 1412
BsgI GTGCAG 2 cut(s) 204, 810
Bsh1236I CGCG 1 cut(s) 491
BshFI GGCC 2 cut(s) 215, 795
BshNI GGYRCC 1 cut(s) 1665
BshVI ATCGAT 1 cut(s) 635
BsiHKAI GWGCWC 3 cut(s) 199, 733, 1534
BsiSI CCGG 2 cut(s) 385, 678
BslFI GGGAC 2 cut(s) 583, 1144
BslI CCNNNNNNNGG 4 cut(s) 206, 390, 391, 1576
BsmAI GTCTC 1 cut(s) 102
BsmFI GGGAC 2 cut(s) 583, 1144
BsmI GAATGC 3 cut(s) 68, 122, 973
BsnI GGCC 2 cut(s) 215, 795
Bso31I GGTCTC 1 cut(s) 102
Bsp1286I GDGCHC 4 cut(s) 137, 199, 733, 1534
Bsp143I GATC 6 cut(s) 101, 369, 1017, 1299, 1621, 1731
Bsp19I CCATGG 1 cut(s) 1303
BspACI CCGC 1 cut(s) 489
BspANI GGCC 2 cut(s) 215, 795
BspCNI CTCAG 8 cut(s) 64, 86, 160, 499, 1315, 1540, 1600, 1653
BspDI ATCGAT 1 cut(s) 635
BspFNI CGCG 1 cut(s) 491
BspHI TCATGA 2 cut(s) 1137, 1734
BspLI GGNNCC 3 cut(s) 1301, 1373, 1667
BspMI ACCTGC 1 cut(s) 811
BspPI GGATC 4 cut(s) 96, 1294, 1307, 1739
BspT107I GGYRCC 1 cut(s) 1665
BspTNI GGTCTC 1 cut(s) 102
BsrDI GCAATG 2 cut(s) 91, 575
BsrI ACTGG 3 cut(s) 757, 850, 1686
BssECI CCNNGG 1 cut(s) 1303
BssMI GATC 6 cut(s) 101, 369, 1017, 1299, 1621, 1731
BssT1I CCWWGG 1 cut(s) 1303
Bst4CI ACNGT 2 cut(s) 463, 958
Bst6I CTCTTC 3 cut(s) 775, 1472, 1632
BstC8I GCNNGC 9 cut(s) 428, 525, 793, 828, 1000, 1041, 1045, 1049, 1183
BstDSI CCRYGG 1 cut(s) 1303
BstENI CCTNNNNNAGG 1 cut(s) 204
BstF5I GGATG 3 cut(s) 619, 741, 1534
BstFNI CGCG 1 cut(s) 491
BstKTI GATC 6 cut(s) 104, 372, 1020, 1302, 1624, 1734
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 6 cut(s) 101, 369, 1017, 1299, 1621, 1731
BstMWI GCNNNNNNNGC 9 cut(s) 74, 221, 488, 539, 694, 782, 797, 1328, 1613
BstNSI RCATGY 8 cut(s) 274, 286, 430, 527, 830, 998, 1051, 1185
BstSCI CCNGG 2 cut(s) 383, 677
BstSLI GKGCMC 2 cut(s) 137, 199
BstUI CGCG 1 cut(s) 491
BstV1I GCAGC 6 cut(s) 507, 554, 812, 1048, 1343, 1412
BstX2I RGATCY 2 cut(s) 101, 1299
BstYI RGATCY 2 cut(s) 101, 1299
Bsu15I ATCGAT 1 cut(s) 635
BsuI GTATCC 1 cut(s) 1813
BsuRI GGCC 2 cut(s) 215, 795
BsuTUI ATCGAT 1 cut(s) 635
BtgI CCRYGG 1 cut(s) 1303
BtsCI GGATG 3 cut(s) 619, 741, 1534
BtsI GCAGTG 2 cut(s) 45, 187
BtsIMutI CAGTG 4 cut(s) 45, 187, 459, 954
BveI ACCTGC 1 cut(s) 811
Cac8I GCNNGC 9 cut(s) 428, 525, 793, 828, 1000, 1041, 1045, 1049, 1183
CciI TCATGA 2 cut(s) 1137, 1734
ClaI ATCGAT 1 cut(s) 635
DpnI GATC 6 cut(s) 103, 371, 1019, 1301, 1623, 1733
DpnII GATC 6 cut(s) 101, 369, 1017, 1299, 1621, 1731
DraI TTTAAA 1 cut(s) 841
DraIII CACNNNGTG 1 cut(s) 1156
Eam1104I CTCTTC 3 cut(s) 775, 1472, 1632
EarI CTCTTC 3 cut(s) 775, 1472, 1632
Ecl136II GAGCTC 1 cut(s) 731
Eco130I CCWWGG 1 cut(s) 1303
Eco147I AGGCCT 2 cut(s) 215, 795
Eco24I GRGCYC 1 cut(s) 733
Eco31I GGTCTC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 731
EcoICRI GAGCTC 1 cut(s) 731
EcoNI CCTNNNNNAGG 1 cut(s) 204
EcoRI GAATTC 1 cut(s) 455
EcoT14I CCWWGG 1 cut(s) 1303
EcoT22I ATGCAT 3 cut(s) 428, 1183, 1187
EcoT38I GRGCYC 1 cut(s) 733
ErhI CCWWGG 1 cut(s) 1303
FalI AAGNNNNNCTT 4 cut(s) 105, 137, 1641, 1673
FaqI GGGAC 2 cut(s) 583, 1144
FauNDI CATATG 1 cut(s) 1098
Fnu4HI GCNGC 7 cut(s) 489, 521, 543, 801, 1037, 1332, 1401
FokI GGATG 3 cut(s) 626, 748, 1521
FriOI GRGCYC 1 cut(s) 733
Fsp4HI GCNGC 7 cut(s) 489, 521, 543, 801, 1037, 1332, 1401
FspBI CTAG 4 cut(s) 797, 990, 1007, 1539
GluI GCNGC 7 cut(s) 489, 521, 543, 801, 1037, 1332, 1401
HaeIII GGCC 2 cut(s) 215, 795
HapII CCGG 2 cut(s) 385, 678
HindIII AAGCTT 2 cut(s) 918, 1439
HinfI GANTC 3 cut(s) 42, 632, 1216
HpaII CCGG 2 cut(s) 385, 678
HphI GGTGA 2 cut(s) 1024, 1826
Hpy166II GTNNAC 5 cut(s) 197, 515, 762, 1174, 1507
Hpy188I TCNGA 8 cut(s) 41, 54, 253, 508, 735, 1348, 1662, 1689
Hpy8I GTNNAC 5 cut(s) 197, 515, 762, 1174, 1507
HpyAV CCTTC 4 cut(s) 20, 200, 806, 1459
HpyCH4III ACNGT 2 cut(s) 463, 958
HpyCH4IV ACGT 4 cut(s) 8, 585, 1155, 1789
HpyF10VI GCNNNNNNNGC 9 cut(s) 74, 221, 488, 539, 694, 782, 797, 1328, 1613
HpySE526I ACGT 4 cut(s) 8, 585, 1155, 1789
Kzo9I GATC 6 cut(s) 101, 369, 1017, 1299, 1621, 1731
LmnI GCTCC 3 cut(s) 345, 1007, 1056
Lsp1109I GCAGC 6 cut(s) 507, 554, 812, 1048, 1343, 1412
LweI GCATC 4 cut(s) 604, 627, 1023, 1793
MaeI CTAG 4 cut(s) 797, 990, 1007, 1539
MaeII ACGT 4 cut(s) 8, 585, 1155, 1789
MaeIII GTNAC 3 cut(s) 375, 655, 1598
MalI GATC 6 cut(s) 103, 371, 1019, 1301, 1623, 1733
MboI GATC 6 cut(s) 101, 369, 1017, 1299, 1621, 1731
MboII GAAGA 9 cut(s) 449, 762, 926, 1042, 1474, 1489, 1616, 1649, 1789
MfeI CAATTG 1 cut(s) 1571
MflI RGATCY 2 cut(s) 101, 1299
MhlI GDGCHC 4 cut(s) 137, 199, 733, 1534
MluCI AATT 9 cut(s) 307, 446, 455, 1231, 1309, 1542, 1571, 1583, 1868
MmeI TCCRAC 3 cut(s) 220, 1463, 1501
Mph1103I ATGCAT 3 cut(s) 428, 1183, 1187
MroXI GAANNNNTTC 1 cut(s) 1127
MslI CAYNNNNRTG 2 cut(s) 309, 1671
MspA1I CMGCKG 1 cut(s) 520
MspI CCGG 2 cut(s) 385, 678
MspR9I CCNGG 2 cut(s) 385, 679
MunI CAATTG 1 cut(s) 1571
Mva1269I GAATGC 3 cut(s) 68, 122, 973
MvnI CGCG 1 cut(s) 491
MwoI GCNNNNNNNGC 9 cut(s) 74, 221, 488, 539, 694, 782, 797, 1328, 1613
NciI CCSGG 2 cut(s) 385, 679
NcoI CCATGG 1 cut(s) 1303
NdeI CATATG 1 cut(s) 1098
NdeII GATC 6 cut(s) 101, 369, 1017, 1299, 1621, 1731
NlaIV GGNNCC 3 cut(s) 1301, 1373, 1667
NmuCI GTSAC 2 cut(s) 375, 655
NsiI ATGCAT 3 cut(s) 428, 1183, 1187
NspI RCATGY 8 cut(s) 274, 286, 430, 527, 830, 998, 1051, 1185
OliI CACNNNNGTG 1 cut(s) 1671
PaeI GCATGC 5 cut(s) 430, 527, 830, 1051, 1185
PagI TCATGA 2 cut(s) 1137, 1734
PaqCI CACCTGC 1 cut(s) 811
PceI AGGCCT 2 cut(s) 215, 795
PciI ACATGT 1 cut(s) 282
PctI GAATGC 3 cut(s) 68, 122, 973
PdmI GAANNNNTTC 1 cut(s) 1127
PfeI GAWTC 3 cut(s) 42, 632, 1216
PflMI CCANNNNNTGG 1 cut(s) 1576
PkrI GCNGC 7 cut(s) 490, 522, 544, 802, 1038, 1333, 1402
PscI ACATGT 1 cut(s) 282
Psp124BI GAGCTC 1 cut(s) 733
Psp1406I AACGTT 1 cut(s) 8
PspN4I GGNNCC 3 cut(s) 1301, 1373, 1667
PsuI RGATCY 2 cut(s) 101, 1299
PvuII CAGCTG 1 cut(s) 520
RseI CAYNNNNRTG 2 cut(s) 309, 1671
SacI GAGCTC 1 cut(s) 733
SatI GCNGC 7 cut(s) 489, 521, 543, 801, 1037, 1332, 1401
Sau3AI GATC 6 cut(s) 101, 369, 1017, 1299, 1621, 1731
ScrFI CCNGG 2 cut(s) 385, 679
SduI GDGCHC 4 cut(s) 137, 199, 733, 1534
SfaNI GCATC 4 cut(s) 604, 627, 1023, 1793
SmiMI CAYNNNNRTG 2 cut(s) 309, 1671
SphI GCATGC 5 cut(s) 430, 527, 830, 1051, 1185
Sse9I AATT 9 cut(s) 307, 446, 455, 1231, 1309, 1542, 1571, 1583, 1868
SseBI AGGCCT 2 cut(s) 215, 795
SsiI CCGC 1 cut(s) 489
SspI AATATT 1 cut(s) 1393
SspMI CTAG 4 cut(s) 797, 990, 1007, 1539
SstI GAGCTC 1 cut(s) 733
StuI AGGCCT 2 cut(s) 215, 795
StyD4I CCNGG 2 cut(s) 383, 677
StyI CCWWGG 1 cut(s) 1303
TaaI ACNGT 2 cut(s) 463, 958
TaiI ACGT 4 cut(s) 11, 588, 1158, 1792
TaqI TCGA 4 cut(s) 266, 467, 635, 1635
TaqII GACCGA 1 cut(s) 1194
TasI AATT 9 cut(s) 307, 446, 455, 1231, 1309, 1542, 1571, 1583, 1868
TauI GCSGC 1 cut(s) 491
TfiI GAWTC 3 cut(s) 42, 632, 1216
TscAI CASTG 4 cut(s) 52, 187, 466, 961
TseFI GTSAC 2 cut(s) 375, 655
TseI GCWGC 6 cut(s) 520, 542, 800, 1036, 1331, 1400
Tsp45I GTSAC 2 cut(s) 375, 655
TspDTI ATGAA 7 cut(s) 345, 345, 417, 1616, 1668, 1751, 1790
TspRI CASTG 4 cut(s) 52, 187, 466, 961
Van91I CCANNNNNTGG 1 cut(s) 1576
VneI GTGCAC 1 cut(s) 195
XagI CCTNNNNNAGG 1 cut(s) 204
XapI RAATTY 3 cut(s) 455, 1309, 1868
XbaI TCTAGA 1 cut(s) 989
XceI RCATGY 8 cut(s) 274, 286, 430, 527, 830, 998, 1051, 1185
XcmI CCANNNNNNNNNTGG 1 cut(s) 1844
XmnI GAANNNNTTC 1 cut(s) 1127
XspI CTAG 4 cut(s) 797, 990, 1007, 1539
Zsp2I ATGCAT 3 cut(s) 428, 1183, 1187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.