Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003353

Physical Location & Seq

Genomic Coordinates Forward (+)

32132601 .. 32133661

Gene Structure 1061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCAAGCTCTGTTTTTGAGCCTTTGCCAGAGAGGAGTGATGTTACGTGGAGTTCGATGGTTGCCGGGTATGTGCAAAATGAGCTTTATGAAGAGGGTGTTGTTCCATAGAGCTAAAAGCATATGGTTAGAACAGAACCAGTTTACAGTTTATTCTGCTATTTGTGCTTGTGCAGGTCTGGCTGCTCTCATTGAAGGAAAGCAGTTGCATGCTCTGTTATCTACAACTGGCTTTGGTTTGAACGTATTTACTGTTTCCTCTCTTATAGACATGTATGCAAAATGTGGTAGCATTAGAGAAGCGTACAGTGTTTTTCAAGGTATGAACGAGAGGAACATTGTTTTATGGAAAGCCATGATTTCAGGGTTCGCTAGACATGCTTGCTCCCTAGAGGTGATGGTCTTATTGGAGAAAATGCAGCAGATAGGTATGTTCCCGGGTGAGGTAACCTATGTTTCGGTATTAACTGCCTGTAGTCATATGGGACTAGTTGAAAGTGGAAAGAAATATTTCAACCTCATGATAACAGAGCACAATGTGTCACCAAATGTTGTTCACTATTCATGCATGGTTAATATTTTAGGTCGGTCAGGGTTGATTCTTGAAGCCTATGACTTGATACAGAAAATTCCGTTTGGTGCTACTGCTTCTATGTGGGGTTCTCTGTTGGCTTCTTGTAGGATCCATGGAAATATTGACTTGGCCGAGGTCGCAACAAAGCATTTGTCTGAGATAGAACCTAATAATGCAGGAAACCATATATTGCTGTCAAATGTTTATGCAGCAAATAACAAGTGGGGGGAAGTTGCGAGAAGGAGGGAGATTCTTATAGAAAGCGAGTTGAAGAAAGAGAGAGAGGGAAGAATATATTCAAAGTTGGACGATTTGGTCACAGAATTGAAGACAATGGGCTACAAGGCTGAGACTGAACACGACCTTCATTACGTGGGTGAGAGCAGAAAGCATGAACTTTTGAGGCAACCACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

330

Amino Acids

36.98

Weight (kDa)

8.65

Isoelectric Point (pI)

56.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04780
fragaria_vesca	FvH4_7g02270
malus_domestica	MD05G1362900.v1.1 MD05G1363000.v1.1 MD10G1340500.v1.1
prunus_persica	Prupe.2G071000_v2.0.a1 Prupe.2G073400_v2.0.a1
pyrus_communis	pycom05g32940 pycom10g29030
rosa_chinensis	RchiOBHm_Chr1g0319571 RchiOBHm_Chr6g0267541 RchiOBHm_Chr7g0197341
rosa_laevigata	RLG00000030470
rosa_multiflora	Rmu_sc0001522.1_g000010 Rmu_sc0002539.1_g000062 Rmu_sc0031493.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284250 Rroxscaffold_4G00328280 Rroxscaffold_7G00200640
rosa_rugosa	Rorug01G0028300 Rorug01G0028400 Rorug01G0028500 Rorug01G0028600 Rorug06G0033600 Rorug06G0033600
rosa_samantha	Rh1AG040400 Rh1BG037600 Rh1CG041600 Rh1DG028300 Rh6AG155100 Rh6BG155700 Rh6CG150900 Rh6DG141000
rosa_wichuraiana	Rw0G012790 Rw1G003340 Rw6G013310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	887
Acc36I	ACCTGC	1 cut(s)	164
AclWI	GGATC	2 cut(s)	676, 689
AcoI	YGGCCR	1 cut(s)	702
AcsI	RAATTY	1 cut(s)	627
AdeI	CACNNNGTG	1 cut(s)	538
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	1 cut(s)	442
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	9 cut(s)	194, 241, 317, 494, 514, 605, 844, 873, 901
AhlI	ACTAGT	1 cut(s)	487
AluBI	AGCT	3 cut(s)	8, 84, 113
AluI	AGCT	3 cut(s)	8, 84, 113
Alw21I	GWGCWC	1 cut(s)	534
Alw26I	GTCTC	1 cut(s)	917
AlwI	GGATC	2 cut(s)	676, 689
Ama87I	CYCGRG	1 cut(s)	436
AoxI	GGCC	1 cut(s)	702
ApeKI	GCWGC	3 cut(s)	182, 418, 782
ApoI	RAATTY	1 cut(s)	627
ArsI	GACNNNNNNTTYG	2 cut(s)	710, 742
Asp700I	GAANNNNTTC	2 cut(s)	509, 868
AsuC2I	CCSGG	3 cut(s)	66, 437, 438
AsuHPI	GGTGA	4 cut(s)	406, 452, 534, 962
AvaI	CYCGRG	1 cut(s)	436
BamHI	GGATCC	1 cut(s)	681
BbsI	GAAGAC	1 cut(s)	908
Bbv12I	GWGCWC	1 cut(s)	534
BbvI	GCAGC	3 cut(s)	169, 430, 794
BccI	CCATC	2 cut(s)	51, 391
BcnI	CCSGG	3 cut(s)	66, 437, 438
BcoDI	GTCTC	1 cut(s)	917
BcuI	ACTAGT	1 cut(s)	487
BfaI	CTAG	3 cut(s)	372, 389, 488
BfmI	CTRYAG	1 cut(s)	472
BfuAI	ACCTGC	1 cut(s)	164
BisI	GCNGC	3 cut(s)	183, 419, 783
BlsI	GCNGC	3 cut(s)	184, 420, 784
Bme1390I	CCNGG	3 cut(s)	66, 437, 438
BmeT110I	CYCGRG	1 cut(s)	436
BmiI	GGNNCC	1 cut(s)	683
BmrFI	CCNGG	3 cut(s)	66, 437, 438
BpiI	GAAGAC	1 cut(s)	908
BpuMI	CCSGG	3 cut(s)	66, 437, 438
BsaAI	YACGTR	2 cut(s)	47, 946
BsaJI	CCNNGG	3 cut(s)	436, 685, 705
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse1I	ACTGG	2 cut(s)	139, 232
BseDI	CCNNGG	3 cut(s)	436, 685, 705
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseMII	CTCAG	2 cut(s)	720, 912
BseNI	ACTGG	2 cut(s)	139, 232
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	3 cut(s)	169, 430, 794
BsgI	GTGCAG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	704
BsiHKAI	GWGCWC	1 cut(s)	534
BsiHKCI	CYCGRG	1 cut(s)	436
BsiSI	CCGG	2 cut(s)	65, 437
BslFI	GGGAC	1 cut(s)	498
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmAI	GTCTC	1 cut(s)	917
BsmFI	GGGAC	1 cut(s)	498
BsnI	GGCC	1 cut(s)	704
BsoBI	CYCGRG	1 cut(s)	436
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp143I	GATC	1 cut(s)	681
Bsp19I	CCATGG	1 cut(s)	685
BspANI	GGCC	1 cut(s)	704
BspCNI	CTCAG	2 cut(s)	721, 913
BspHI	TCATGA	1 cut(s)	519
BspLI	GGNNCC	1 cut(s)	683
BspMI	ACCTGC	1 cut(s)	164
BspPI	GGATC	2 cut(s)	676, 689
BsrI	ACTGG	2 cut(s)	139, 232
BssECI	CCNNGG	3 cut(s)	436, 685, 705
BssMI	GATC	1 cut(s)	681
BssT1I	CCWWGG	1 cut(s)	685
Bst4CI	ACNGT	4 cut(s)	148, 253, 308, 987
Bst6I	CTCTTC	1 cut(s)	86
BstBAI	YACGTR	2 cut(s)	47, 946
BstC8I	GCNNGC	3 cut(s)	6, 210, 382
BstDEI	CTNAG	2 cut(s)	729, 921
BstDSI	CCRYGG	1 cut(s)	685
BstEII	GGTNACC	1 cut(s)	445
BstKTI	GATC	1 cut(s)	684
BstMAI	GTCTC	1 cut(s)	917
BstMBI	GATC	1 cut(s)	681
BstMWI	GCNNNNNNNGC	5 cut(s)	81, 164, 179, 377, 710
BstNSI	RCATGY	3 cut(s)	212, 274, 380
BstPI	GGTNACC	1 cut(s)	445
BstSCI	CCNGG	3 cut(s)	64, 435, 436
BstSFI	CTRYAG	1 cut(s)	472
BstV1I	GCAGC	3 cut(s)	169, 430, 794
BstV2I	GAAGAC	1 cut(s)	908
BstX2I	RGATCY	1 cut(s)	681
BstYI	RGATCY	1 cut(s)	681
BsuRI	GGCC	1 cut(s)	704
BtgI	CCRYGG	1 cut(s)	685
BtsIMutI	CAGTG	1 cut(s)	313
BveI	ACCTGC	1 cut(s)	164
Cac8I	GCNNGC	3 cut(s)	6, 210, 382
CciI	TCATGA	1 cut(s)	519
Cfr9I	CCCGGG	1 cut(s)	436
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	9 cut(s)	209, 271, 355, 377, 520, 564, 568, 686, 965
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	2 cut(s)	729, 921
DpnI	GATC	1 cut(s)	683
DpnII	GATC	1 cut(s)	681
DraIII	CACNNNGTG	1 cut(s)	538
DrdI	GACNNNNNNGTC	1 cut(s)	887
DseDI	GACNNNNNNGTC	1 cut(s)	887
EaeI	YGGCCR	1 cut(s)	702
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	685
Eco88I	CYCGRG	1 cut(s)	436
Eco91I	GGTNACC	1 cut(s)	445
EcoO65I	GGTNACC	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	685
EcoT22I	ATGCAT	1 cut(s)	569
ErhI	CCWWGG	1 cut(s)	685
FaeI	CATG	9 cut(s)	212, 274, 358, 380, 523, 567, 571, 689, 968
FaqI	GGGAC	1 cut(s)	498
FatI	CATG	9 cut(s)	208, 270, 354, 376, 519, 563, 567, 685, 964
FauNDI	CATATG	2 cut(s)	122, 480
Fnu4HI	GCNGC	3 cut(s)	183, 419, 783
Fsp4HI	GCNGC	3 cut(s)	183, 419, 783
FspBI	CTAG	3 cut(s)	372, 389, 488
GluI	GCNGC	3 cut(s)	183, 419, 783
HaeIII	GGCC	1 cut(s)	704
HapII	CCGG	2 cut(s)	65, 437
Hin1II	CATG	9 cut(s)	212, 274, 358, 380, 523, 567, 571, 689, 968
HinfI	GANTC	2 cut(s)	598, 823
HpaII	CCGG	2 cut(s)	65, 437
HphI	GGTGA	4 cut(s)	406, 452, 534, 962
Hpy166II	GTNNAC	2 cut(s)	144, 556
Hpy188I	TCNGA	1 cut(s)	730
Hpy188III	TCNNGA	2 cut(s)	520, 602
Hpy8I	GTNNAC	2 cut(s)	144, 556
HpyAV	CCTTC	3 cut(s)	188, 807, 947
HpyCH4III	ACNGT	4 cut(s)	148, 253, 308, 987
HpyCH4IV	ACGT	3 cut(s)	46, 243, 945
HpyCH4V	TGCA	9 cut(s)	4, 75, 173, 208, 278, 418, 567, 749, 782
HpyF10VI	GCNNNNNNNGC	5 cut(s)	81, 164, 179, 377, 710
HpyF3I	CTNAG	2 cut(s)	729, 921
HpySE526I	ACGT	3 cut(s)	46, 243, 945
Hsp92II	CATG	9 cut(s)	212, 274, 358, 380, 523, 567, 571, 689, 968
Kzo9I	GATC	1 cut(s)	681
LmnI	GCTCC	1 cut(s)	389
Lsp1109I	GCAGC	3 cut(s)	169, 430, 794
MaeI	CTAG	3 cut(s)	372, 389, 488
MaeII	ACGT	3 cut(s)	46, 243, 945
MaeIII	GTNAC	4 cut(s)	42, 445, 540, 889
MalI	GATC	1 cut(s)	683
MboI	GATC	1 cut(s)	681
MboII	GAAGA	4 cut(s)	103, 856, 873, 913
MflI	RGATCY	1 cut(s)	681
MhlI	GDGCHC	1 cut(s)	534
MluCI	AATT	2 cut(s)	627, 896
MmeI	TCCRAC	1 cut(s)	858
Mph1103I	ATGCAT	1 cut(s)	569
MroXI	GAANNNNTTC	2 cut(s)	509, 868
MseI	TTAA	2 cut(s)	464, 573
MspI	CCGG	2 cut(s)	65, 437
MspR9I	CCNGG	3 cut(s)	66, 437, 438
MwoI	GCNNNNNNNGC	5 cut(s)	81, 164, 179, 377, 710
NciI	CCSGG	3 cut(s)	66, 437, 438
NcoI	CCATGG	1 cut(s)	685
NdeI	CATATG	2 cut(s)	122, 480
NdeII	GATC	1 cut(s)	681
NlaIII	CATG	9 cut(s)	212, 274, 358, 380, 523, 567, 571, 689, 968
NlaIV	GGNNCC	1 cut(s)	683
NmeAIII	GCCGAG	1 cut(s)	730
NmuCI	GTSAC	2 cut(s)	540, 889
NsiI	ATGCAT	1 cut(s)	569
NspI	RCATGY	3 cut(s)	212, 274, 380
PaeI	GCATGC	1 cut(s)	212
PagI	TCATGA	1 cut(s)	519
PciI	ACATGT	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	1 cut(s)	52
PdmI	GAANNNNTTC	2 cut(s)	509, 868
PfeI	GAWTC	2 cut(s)	598, 823
PkrI	GCNGC	3 cut(s)	184, 420, 784
Ppu21I	YACGTR	2 cut(s)	47, 946
PscI	ACATGT	1 cut(s)	270
PspEI	GGTNACC	1 cut(s)	445
PspN4I	GGNNCC	1 cut(s)	683
PsuI	RGATCY	1 cut(s)	681
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SaqAI	TTAA	2 cut(s)	464, 573
SatI	GCNGC	3 cut(s)	183, 419, 783
Sau3AI	GATC	1 cut(s)	681
ScrFI	CCNGG	3 cut(s)	66, 437, 438
SduI	GDGCHC	1 cut(s)	534
SfcI	CTRYAG	1 cut(s)	472
SmaI	CCCGGG	1 cut(s)	438
SpeI	ACTAGT	1 cut(s)	487
SphI	GCATGC	1 cut(s)	212
Sse9I	AATT	2 cut(s)	627, 896
SspI	AATATT	3 cut(s)	509, 577, 694
SspMI	CTAG	3 cut(s)	372, 389, 488
StyD4I	CCNGG	3 cut(s)	64, 435, 436
StyI	CCWWGG	1 cut(s)	685
TaaI	ACNGT	4 cut(s)	148, 253, 308, 987
TaiI	ACGT	3 cut(s)	49, 246, 948
TaqI	TCGA	1 cut(s)	55
TaqII	GACCGA	1 cut(s)	576
TasI	AATT	2 cut(s)	627, 896
TfiI	GAWTC	2 cut(s)	598, 823
Tru1I	TTAA	2 cut(s)	464, 573
Tru9I	TTAA	2 cut(s)	464, 573
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	2 cut(s)	540, 889
TseI	GCWGC	3 cut(s)	182, 418, 782
Tsp45I	GTSAC	2 cut(s)	540, 889
TspDTI	ATGAA	5 cut(s)	104, 338, 552, 929, 981
TspGWI	ACGGA	1 cut(s)	621
TspMI	CCCGGG	1 cut(s)	436
TspRI	CASTG	1 cut(s)	313
XapI	RAATTY	1 cut(s)	627
XceI	RCATGY	3 cut(s)	212, 274, 380
XmaI	CCCGGG	1 cut(s)	436
XmnI	GAANNNNTTC	2 cut(s)	509, 868
XspI	CTAG	3 cut(s)	372, 389, 488
Zsp2I	ATGCAT	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.