Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003353

Physical Location & Seq

Genomic Coordinates Reverse (-)

24345035 .. 24348928

Gene Structure 3894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23997

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1803 bp

ATGAGAACCTTAAGGAGATACAAGGAAGGATTGTTTAACAGTAGCACAGCTCAGATATATTGTAGAAAATTCTCAGCCATTGGCAATGCTAAAGCTGATAGACCCAGAGACCAAGAATGCCTTGTTTGGTTGCGCACAAGTGCCACTCATATATCGCTTTTGCATCAAATCTTGCAAAGCAGTGCAAGAACAGGTGCACCTATGGAAGGAAAGGCCTGCCATGCACAGAGTATTTGTGTTGGATTACAATCGGACACTTTAACGTCTAACATGCTTATTAACATGTATTCAAAATGTGGCTTACATAATTGCGCTAGAAAAGTATTTGATGAAATGCCTGAAAGGAGCTTAGTTTCATGGAATACTATGATTGGGTCACTTGCCCGGAATGGGGAGGAACAAGAAGCCCTCAGTGTTTTCGTACGTATGCAAAGAGAAGAAAACCAATTTAGTGAATTCACTGTTTCAAGTGTTCTTTTCGCTTGTGCTGCGAAATGTGCTGTGTCTGAGTGTAAACAGCTTCATGCTTTTGCTATTAAGGTAGCAATGGTTTTGAATGTCTATGTGGGGACTGCATTGCTTGACGTTTATTCAAAGGCTGGATTGATAAAGGATGCAAGTTTTGTTTTTGAGTCGATGCCAGAGAGGAGTGATGTCACGTGGAGTTCAATGGTTGCTGGGTATGCGCAAAATGGGCTCTATGAGGAGGCTTTGGTGTTGCTCCACAGAGCTCAAATGATAGGACTAGAACATAACCAGTTTACAATCTCTTCTGCTATTTGTGCTTGTGCAGGTCTGGCAGCTTTGATAGAAGGGAAGCAGGTGCATGCCTTCATTGGAGAAGCATACACCGTGTTTCAAGGTATGGAGGACAGGAACACTATTTTGTGGAATGCCATGATTTCTGGGTTTTCTAGACATGCTTGCTCCCTAGAGGTGATGATCTTATTTGAGAAAATGCAGCAGGCAGGTATGCTCCCAAGTGAAGTAGCGTATATATCTGTATTAACTGCTTGTAGTCATATGGGATTGGTTGAAAGTGGAAGGAAATATTTCAACCTCATGATAACAGAACACAATATGTCCCCAAATTTTGTTCACTATGCATGCATGGTTGATATGTTTGGTCGGTCAGGGTTGATTCTTGAAGCCCATAATTTGATTGAGAATATGCCATTTGATGCTACTGCTTCTATGTGGGGTTCACTGTTAGCTTCTTGTAGGATCCATGGAAATTTTCATTTAGCTGAGATAGCAGCTAAGCATTTGTCTGAGATAGAACCGAACAATGCAGGGAACCTCATTTTGTTGTCAAATATTTATGCAGCAAATAATAAGTGGGAGGAGGTTGCAAGAACAAGGAAGCTTCTTAAAGAAAGTGAGTTGAAGAAGGAAAGAGGGAAGAGTTGGATTGAAATCAAGGACAAAGTTCACTCATTTATGGTCGGAGAGAGAAAACATCCTAGAATTGCTGAGATATACTCTAAGTTAGACCAATTGGTGGAAAAATTAAGGATGATGGGTTACAAGGCTGAGATTGAACATGATCTTCATTATGTCGAAGAGAGCAGAAAACATGAACTTCTGAGGCACCATAGTGAAAAACTTGCTCTTACTTTTGGGTTGATGTGCTTACCCTCCAATGCACCTATCAGGATCATGAAGAATCTTAGAATTTGTGGGGATTGTCATTCTTTTATGAAGATCGCATCAAGTTGTTTGGGGAGGGAAATCATTGTCAGGGATACTAAAAGGTTTCACCATTTCAAAAATGGTTTTTGCTCCTGTCAGGAATTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

600

Amino Acids

67.72

Weight (kDa)

8.15

Isoelectric Point (pI)

53.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	116 - 163	1.2e-06	PPR repeat family
PPR	PF01535	118 - 146	6.2e-07	PPR repeat
PPR_2	PF13041	293 - 340	1.2e-06	PPR repeat family
E_motif	PF20431	410 - 472	1.5e-19	E motif
DYW_deaminase	PF14432	508 - 600	2.7e-37	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04780
fragaria_vesca	FvH4_7g02270
malus_domestica	MD05G1362900.v1.1 MD05G1363000.v1.1 MD10G1340500.v1.1
prunus_persica	Prupe.2G071000_v2.0.a1 Prupe.2G073400_v2.0.a1
pyrus_communis	pycom05g32940 pycom10g29030
rosa_chinensis	RchiOBHm_Chr1g0319571 RchiOBHm_Chr6g0267541 RchiOBHm_Chr7g0197341
rosa_laevigata	RLG00000030470
rosa_multiflora	Rmu_sc0001522.1_g000010 Rmu_sc0002539.1_g000062 Rmu_sc0031493.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284250 Rroxscaffold_4G00328280 Rroxscaffold_7G00200640
rosa_rugosa	Rorug01G0028300 Rorug01G0028400 Rorug01G0028500 Rorug01G0028600 Rorug06G0033600 Rorug06G0033600
rosa_samantha	Rh1AG040400 Rh1BG037600 Rh1CG041600 Rh1DG028300 Rh6AG155100 Rh6BG155700 Rh6CG150900 Rh6DG141000
rosa_wichuraiana	Rw0G012790 Rw1G003340 Rw6G013310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	811
Acc16I	TGCGCA	2 cut(s)	134, 687
Acc36I	ACCTGC	3 cut(s)	782, 811, 959
AccB1I	GGYRCC	1 cut(s)	1590
AccB7I	CCANNNNNTGG	1 cut(s)	1501
AclWI	GGATC	3 cut(s)	1219, 1232, 1664
AcsI	RAATTY	6 cut(s)	68, 455, 1090, 1234, 1674, 1793
AcvI	CACGTG	1 cut(s)	660
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	4 cut(s)	206, 390, 391, 1501
AflII	CTTAAG	1 cut(s)	10
AflIII	ACRYGT	1 cut(s)	282
AleI	CACNNNNGTG	1 cut(s)	1596
Alw21I	GWGCWC	2 cut(s)	199, 733
Alw26I	GTCTC	1 cut(s)	102
Alw44I	GTGCAC	1 cut(s)	195
AlwI	GGATC	3 cut(s)	1219, 1232, 1664
AoxI	GGCC	1 cut(s)	213
ApaLI	GTGCAC	1 cut(s)	195
ApeKI	GCWGC	5 cut(s)	488, 800, 961, 1256, 1325
ApoI	RAATTY	6 cut(s)	68, 455, 1090, 1234, 1674, 1793
Asp700I	GAANNNNTTC	1 cut(s)	1052
AspLEI	GCGC	3 cut(s)	135, 314, 688
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	2 cut(s)	949, 1751
BaeGI	GKGCMC	1 cut(s)	199
BamHI	GGATCC	1 cut(s)	1224
BanI	GGYRCC	1 cut(s)	1590
BanII	GRGCYC	2 cut(s)	699, 733
BbrPI	CACGTG	1 cut(s)	660
Bbv12I	GWGCWC	2 cut(s)	199, 733
BbvI	GCAGC	5 cut(s)	475, 812, 973, 1268, 1337
BccI	CCATC	1 cut(s)	1513
BciVI	GTATCC	1 cut(s)	1738
BcnI	CCSGG	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	5 cut(s)	315, 746, 915, 932, 1464
BfrI	CTTAAG	1 cut(s)	10
BfuAI	ACCTGC	3 cut(s)	782, 811, 959
BfuI	GTATCC	1 cut(s)	1738
BisI	GCNGC	5 cut(s)	489, 801, 962, 1257, 1326
BlpI	GCTNAGC	1 cut(s)	1260
BlsI	GCNGC	5 cut(s)	490, 802, 963, 1258, 1327
Bme1390I	CCNGG	1 cut(s)	385
BmiI	GGNNCC	3 cut(s)	1226, 1298, 1592
BmrFI	CCNGG	1 cut(s)	385
BmsI	GCATC	5 cut(s)	172, 604, 627, 1171, 1718
BplI	GAGNNNNNCTC	2 cut(s)	1466, 1498
Bpu1102I	GCTNAGC	1 cut(s)	1260
BpuMI	CCSGG	1 cut(s)	385
BsaAI	YACGTR	2 cut(s)	425, 660
BsaBI	GATNNNNATC	2 cut(s)	247, 1415
BsaI	GGTCTC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	1228
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 390, 391, 1501
Bse1I	ACTGG	1 cut(s)	757
Bse3DI	GCAATG	3 cut(s)	91, 552, 575
Bse8I	GATNNNNATC	2 cut(s)	247, 1415
BseDI	CCNNGG	1 cut(s)	1228
BseGI	GGATG	3 cut(s)	619, 1459, 1521
BseJI	GATNNNNATC	2 cut(s)	247, 1415
BseLI	CCNNNNNNNGG	4 cut(s)	206, 390, 391, 1501
BseMI	GCAATG	3 cut(s)	91, 552, 575
BseMII	CTCAG	9 cut(s)	65, 87, 424, 498, 1239, 1263, 1464, 1524, 1577
BseNI	ACTGG	1 cut(s)	757
BseRI	GAGGAG	3 cut(s)	661, 719, 1358
BseSI	GKGCMC	1 cut(s)	199
BseXI	GCAGC	5 cut(s)	475, 812, 973, 1268, 1337
BseYI	CCCAGC	1 cut(s)	677
BsgI	GTGCAG	1 cut(s)	810
BshFI	GGCC	1 cut(s)	215
BshNI	GGYRCC	1 cut(s)	1590
BsiHKAI	GWGCWC	2 cut(s)	199, 733
BsiSI	CCGG	1 cut(s)	385
BsiWI	CGTACG	1 cut(s)	421
BslFI	GGGAC	2 cut(s)	583, 1069
BslI	CCNNNNNNNGG	4 cut(s)	206, 390, 391, 1501
BsmAI	GTCTC	1 cut(s)	102
BsmFI	GGGAC	2 cut(s)	583, 1069
BsmI	GAATGC	2 cut(s)	122, 898
BsnI	GGCC	1 cut(s)	215
Bso31I	GGTCTC	1 cut(s)	102
Bsp1286I	GDGCHC	3 cut(s)	199, 699, 733
Bsp143I	GATC	5 cut(s)	942, 1224, 1546, 1656, 1704
Bsp1720I	GCTNAGC	1 cut(s)	1260
Bsp19I	CCATGG	1 cut(s)	1228
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	9 cut(s)	64, 86, 423, 499, 1240, 1264, 1465, 1525, 1578
BspHI	TCATGA	2 cut(s)	1062, 1659
BspLI	GGNNCC	3 cut(s)	1226, 1298, 1592
BspMI	ACCTGC	3 cut(s)	782, 811, 959
BspPI	GGATC	3 cut(s)	1219, 1232, 1664
BspT107I	GGYRCC	1 cut(s)	1590
BspTI	CTTAAG	1 cut(s)	10
BspTNI	GGTCTC	1 cut(s)	102
BsrDI	GCAATG	3 cut(s)	91, 552, 575
BsrI	ACTGG	1 cut(s)	757
BssECI	CCNNGG	1 cut(s)	1228
BssMI	GATC	5 cut(s)	942, 1224, 1546, 1656, 1704
BssT1I	CCWWGG	1 cut(s)	1228
Bst4CI	ACNGT	4 cut(s)	41, 463, 853, 1209
Bst6I	CTCTTC	3 cut(s)	775, 1397, 1557
BstAFI	CTTAAG	1 cut(s)	10
BstBAI	YACGTR	2 cut(s)	425, 660
BstC8I	GCNNGC	5 cut(s)	217, 828, 925, 966, 1108
BstDSI	CCRYGG	1 cut(s)	1228
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstF5I	GGATG	3 cut(s)	619, 1459, 1521
BstHHI	GCGC	3 cut(s)	135, 314, 688
BstKTI	GATC	5 cut(s)	945, 1227, 1549, 1659, 1707
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	5 cut(s)	942, 1224, 1546, 1656, 1704
BstMWI	GCNNNNNNNGC	8 cut(s)	221, 488, 497, 683, 694, 782, 797, 1253
BstNSI	RCATGY	5 cut(s)	274, 286, 830, 923, 1110
BstSCI	CCNGG	1 cut(s)	383
BstSLI	GKGCMC	1 cut(s)	199
BstSNI	TACGTA	1 cut(s)	425
BstV1I	GCAGC	5 cut(s)	475, 812, 973, 1268, 1337
BstX2I	RGATCY	1 cut(s)	1224
BstYI	RGATCY	1 cut(s)	1224
BsuI	GTATCC	1 cut(s)	1738
BsuRI	GGCC	1 cut(s)	215
BtgI	CCRYGG	1 cut(s)	1228
BtsCI	GGATG	3 cut(s)	619, 1459, 1521
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	4 cut(s)	187, 418, 459, 1205
BveI	ACCTGC	3 cut(s)	782, 811, 959
Cac8I	GCNNGC	5 cut(s)	217, 828, 925, 966, 1108
CciI	TCATGA	2 cut(s)	1062, 1659
CfoI	GCGC	3 cut(s)	135, 314, 688
Csp6I	GTAC	1 cut(s)	422
CviQI	GTAC	1 cut(s)	422
DpnI	GATC	5 cut(s)	944, 1226, 1548, 1658, 1706
DpnII	GATC	5 cut(s)	942, 1224, 1546, 1656, 1704
Eam1104I	CTCTTC	3 cut(s)	775, 1397, 1557
EarI	CTCTTC	3 cut(s)	775, 1397, 1557
Ecl136II	GAGCTC	1 cut(s)	731
Eco105I	TACGTA	1 cut(s)	425
Eco130I	CCWWGG	1 cut(s)	1228
Eco147I	AGGCCT	1 cut(s)	215
Eco24I	GRGCYC	2 cut(s)	699, 733
Eco31I	GGTCTC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	731
Eco72I	CACGTG	1 cut(s)	660
EcoICRI	GAGCTC	1 cut(s)	731
EcoNI	CCTNNNNNAGG	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	455
EcoT14I	CCWWGG	1 cut(s)	1228
EcoT22I	ATGCAT	2 cut(s)	1108, 1112
EcoT38I	GRGCYC	2 cut(s)	699, 733
ErhI	CCWWGG	1 cut(s)	1228
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FaqI	GGGAC	2 cut(s)	583, 1069
FauNDI	CATATG	1 cut(s)	1023
Fnu4HI	GCNGC	5 cut(s)	489, 801, 962, 1257, 1326
FokI	GGATG	3 cut(s)	626, 1446, 1528
FriOI	GRGCYC	2 cut(s)	699, 733
Fsp4HI	GCNGC	5 cut(s)	489, 801, 962, 1257, 1326
FspBI	CTAG	5 cut(s)	315, 746, 915, 932, 1464
FspI	TGCGCA	2 cut(s)	134, 687
GlaI	GCGC	3 cut(s)	134, 313, 687
GluI	GCNGC	5 cut(s)	489, 801, 962, 1257, 1326
GsaI	CCCAGC	1 cut(s)	681
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	1 cut(s)	385
HhaI	GCGC	3 cut(s)	135, 314, 688
Hin6I	GCGC	3 cut(s)	133, 312, 686
HinP1I	GCGC	3 cut(s)	133, 312, 686
HindIII	AAGCTT	1 cut(s)	1364
HinfI	GANTC	3 cut(s)	632, 1141, 1666
HpaII	CCGG	1 cut(s)	385
HphI	GGTGA	2 cut(s)	949, 1751
Hpy166II	GTNNAC	6 cut(s)	197, 515, 762, 1099, 1205, 1432
Hpy188I	TCNGA	6 cut(s)	54, 253, 508, 1273, 1448, 1587
Hpy188III	TCNNGA	6 cut(s)	915, 1063, 1145, 1654, 1660, 1790
Hpy8I	GTNNAC	6 cut(s)	197, 515, 762, 1099, 1205, 1432
HpyAV	CCTTC	6 cut(s)	20, 200, 806, 841, 1038, 1384
HpyCH4III	ACNGT	4 cut(s)	41, 463, 853, 1209
HpyCH4IV	ACGT	4 cut(s)	263, 424, 585, 659
HpyF10VI	GCNNNNNNNGC	8 cut(s)	221, 488, 497, 683, 694, 782, 797, 1253
HpySE526I	ACGT	4 cut(s)	263, 424, 585, 659
HspAI	GCGC	3 cut(s)	133, 312, 686
Kzo9I	GATC	5 cut(s)	942, 1224, 1546, 1656, 1704
LmnI	GCTCC	5 cut(s)	345, 726, 932, 981, 1787
Lsp1109I	GCAGC	5 cut(s)	475, 812, 973, 1268, 1337
LweI	GCATC	5 cut(s)	172, 604, 627, 1171, 1718
MaeI	CTAG	5 cut(s)	315, 746, 915, 932, 1464
MaeII	ACGT	4 cut(s)	263, 424, 585, 659
MaeIII	GTNAC	3 cut(s)	375, 655, 1523
MalI	GATC	5 cut(s)	944, 1226, 1548, 1658, 1706
MboI	GATC	5 cut(s)	942, 1224, 1546, 1656, 1704
MboII	GAAGA	8 cut(s)	449, 762, 1399, 1414, 1541, 1574, 1675, 1714
MfeI	CAATTG	1 cut(s)	1496
MflI	RGATCY	1 cut(s)	1224
MhlI	GDGCHC	3 cut(s)	199, 699, 733
MlyI	GAGTC	1 cut(s)	641
MmeI	TCCRAC	3 cut(s)	220, 1388, 1426
Mph1103I	ATGCAT	2 cut(s)	1108, 1112
MroXI	GAANNNNTTC	1 cut(s)	1052
MseI	TTAA	8 cut(s)	11, 36, 260, 279, 537, 1007, 1371, 1511
MslI	CAYNNNNRTG	1 cut(s)	1596
MspCI	CTTAAG	1 cut(s)	10
MspI	CCGG	1 cut(s)	385
MspR9I	CCNGG	1 cut(s)	385
MunI	CAATTG	1 cut(s)	1496
Mva1269I	GAATGC	2 cut(s)	122, 898
MwoI	GCNNNNNNNGC	8 cut(s)	221, 488, 497, 683, 694, 782, 797, 1253
NciI	CCSGG	1 cut(s)	385
NcoI	CCATGG	1 cut(s)	1228
NdeI	CATATG	1 cut(s)	1023
NdeII	GATC	5 cut(s)	942, 1224, 1546, 1656, 1704
NlaIV	GGNNCC	3 cut(s)	1226, 1298, 1592
NmuCI	GTSAC	2 cut(s)	375, 655
NsbI	TGCGCA	2 cut(s)	134, 687
NsiI	ATGCAT	2 cut(s)	1108, 1112
NspI	RCATGY	5 cut(s)	274, 286, 830, 923, 1110
OliI	CACNNNNGTG	1 cut(s)	1596
PaeI	GCATGC	2 cut(s)	830, 1110
PagI	TCATGA	2 cut(s)	1062, 1659
PaqCI	CACCTGC	1 cut(s)	811
PceI	AGGCCT	1 cut(s)	215
PciI	ACATGT	1 cut(s)	282
PctI	GAATGC	2 cut(s)	122, 898
PdmI	GAANNNNTTC	1 cut(s)	1052
PfeI	GAWTC	2 cut(s)	1141, 1666
Pfl23II	CGTACG	1 cut(s)	421
PflMI	CCANNNNNTGG	1 cut(s)	1501
PkrI	GCNGC	5 cut(s)	490, 802, 963, 1258, 1327
PleI	GAGTC	1 cut(s)	640
PmaCI	CACGTG	1 cut(s)	660
PmlI	CACGTG	1 cut(s)	660
PpsI	GAGTC	1 cut(s)	640
Ppu21I	YACGTR	2 cut(s)	425, 660
PscI	ACATGT	1 cut(s)	282
Psp124BI	GAGCTC	1 cut(s)	733
PspCI	CACGTG	1 cut(s)	660
PspFI	CCCAGC	1 cut(s)	677
PspLI	CGTACG	1 cut(s)	421
PspN4I	GGNNCC	3 cut(s)	1226, 1298, 1592
PsuI	RGATCY	1 cut(s)	1224
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
RseI	CAYNNNNRTG	1 cut(s)	1596
SacI	GAGCTC	1 cut(s)	733
SaqAI	TTAA	8 cut(s)	11, 36, 260, 279, 537, 1007, 1371, 1511
SatI	GCNGC	5 cut(s)	489, 801, 962, 1257, 1326
Sau3AI	GATC	5 cut(s)	942, 1224, 1546, 1656, 1704
SchI	GAGTC	1 cut(s)	641
ScrFI	CCNGG	1 cut(s)	385
SduI	GDGCHC	3 cut(s)	199, 699, 733
SfaNI	GCATC	5 cut(s)	172, 604, 627, 1171, 1718
SmiMI	CAYNNNNRTG	1 cut(s)	1596
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SnaBI	TACGTA	1 cut(s)	425
SphI	GCATGC	2 cut(s)	830, 1110
SseBI	AGGCCT	1 cut(s)	215
SspI	AATATT	2 cut(s)	1052, 1318
SspMI	CTAG	5 cut(s)	315, 746, 915, 932, 1464
SstI	GAGCTC	1 cut(s)	733
StuI	AGGCCT	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	383
StyI	CCWWGG	1 cut(s)	1228
TaaI	ACNGT	4 cut(s)	41, 463, 853, 1209
TaiI	ACGT	4 cut(s)	266, 427, 588, 662
TaqI	TCGA	2 cut(s)	635, 1560
TaqII	GACCGA	1 cut(s)	1119
TfiI	GAWTC	2 cut(s)	1141, 1666
Tru1I	TTAA	8 cut(s)	11, 36, 260, 279, 537, 1007, 1371, 1511
Tru9I	TTAA	8 cut(s)	11, 36, 260, 279, 537, 1007, 1371, 1511
TscAI	CASTG	4 cut(s)	187, 418, 466, 1212
TseFI	GTSAC	2 cut(s)	375, 655
TseI	GCWGC	5 cut(s)	488, 800, 961, 1256, 1325
Tsp45I	GTSAC	2 cut(s)	375, 655
TspDTI	ATGAA	9 cut(s)	345, 345, 512, 823, 1229, 1541, 1593, 1676, 1715
TspRI	CASTG	4 cut(s)	187, 418, 466, 1212
Van91I	CCANNNNNTGG	1 cut(s)	1501
Vha464I	CTTAAG	1 cut(s)	10
VneI	GTGCAC	1 cut(s)	195
XagI	CCTNNNNNAGG	1 cut(s)	204
XapI	RAATTY	6 cut(s)	68, 455, 1090, 1234, 1674, 1793
XbaI	TCTAGA	1 cut(s)	914
XceI	RCATGY	5 cut(s)	274, 286, 830, 923, 1110
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1769
XmnI	GAANNNNTTC	1 cut(s)	1052
XspI	CTAG	5 cut(s)	315, 746, 915, 932, 1464
Zsp2I	ATGCAT	2 cut(s)	1108, 1112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.