Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003353

Physical Location & Seq

Genomic Coordinates Reverse (-)

62157400 .. 62160079

Gene Structure 2680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030470

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGAGCCACAAATCAACCGAACTCTCAGTAAAAATTGGTAAAGGGTGGTCCAGCATATTTTGCCAACCGCAACCCATTCAAAATTTGCTCCAAACTCTTCTACTTGGACCCGCGCCTAAATTTCCTTGTGAACTTGGGATTACAAAGCTTCCGATTGGGTCTCTGCTGCCATATAAATTCCACAAGGAAAATATTCACCATGCTGCAAGCAATGGTATGAGAACCTTAAGGAGATACAAGGAAGGATTGTTTAACAGTAGCACAGCTCAGACATATTGTAGAAAATTTTCAGCCATTGGCAATGCTAAAGCTGATAGACCCAGAGACCAAGAATGCCTTGTTTGGTTGGGCACAAGTGCCACTCATATATCGCTTTTGCATCAAATCTTGCAAAGCAGTGCAAGAACAGGTGCACCTATGGAAGGAAAGGCCTGCCACGCACAGAGTATTCGTGTTGGATTACAATCGGACACTTTAACGTCTAACATGCTTATAAGCATGTATTCAAAATGTGGCTTACATAATTGCGCTAGAAAAGTATTTGGTGAAATGCCTGAAAGGAGCTTAGTTTCATGGAATACTATGATTGGGTCACTTGCCCGGAATGGGGAGGAACGAGAAGCTCTTAGTGTTTTCGTACGTATGCAAAGAGAAGAAAACCAATTTAGTGAATTCACTGTTTCAAGTGTTCTTTTCGCTTGTGCTGCGAAATGTGCTGTGTCTGAGTGTAAACAGCTTCATGCTTTAGCTATTAAGGTAGCAATGGTTTTGAATGTCTATGTGGGGACTGCATTGCTTGACGTTTATTCAAAGGCTGGATTAATAAAGGATGCAAGTTTTGTTTTTGAGTCGATGCCAGAGAGGAGTGATGTCACGTGGAGTTCAATGGTTGCTGGGTATGTGCAAAATGGGCTCTATGAGGAGGCTTTGGTGTTGCTCCACAGAGCTCAAATGATAGGACTAGAACATAACCAGTTTACAATCTCTTCTGCTATTTGTGCTTGTACAGGTCTGGCAGCTTTGATAGAAGGGAAGCAGGTGCATGCCTTGTTGTTTAAAACTGGATTTGGTTTAAATATCTATATCGTTTCCTCTCTGATAGACATGTATTCAAAATGTGGTAGCATTGGAGAGGCATACACCGTGTTTCAAGGTATGGAGGACAGGAACACTATTTTGTGGAATGCCATGATTTCTGGGTTTTCTAGACATGCTTGCTCCCTAGAGGTGATGATCTTATTTGAGAAAATGCAGCAGGCAGGAAATATTTCAACCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

427

Amino Acids

46.91

Weight (kDa)

8.68

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	188 - 235	8.1e-07	PPR repeat family
PPR	PF01535	190 - 218	3.3e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04780
fragaria_vesca	FvH4_7g02270
malus_domestica	MD05G1362900.v1.1 MD05G1363000.v1.1 MD10G1340500.v1.1
prunus_persica	Prupe.2G071000_v2.0.a1 Prupe.2G073400_v2.0.a1
pyrus_communis	pycom05g32940 pycom10g29030
rosa_chinensis	RchiOBHm_Chr1g0319571 RchiOBHm_Chr6g0267541 RchiOBHm_Chr7g0197341
rosa_laevigata	RLG00000030470
rosa_multiflora	Rmu_sc0001522.1_g000010 Rmu_sc0002539.1_g000062 Rmu_sc0031493.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284250 Rroxscaffold_4G00328280 Rroxscaffold_7G00200640
rosa_rugosa	Rorug01G0028300 Rorug01G0028400 Rorug01G0028500 Rorug01G0028600 Rorug06G0033600 Rorug06G0033600
rosa_samantha	Rh1AG040400 Rh1BG037600 Rh1CG041600 Rh1DG028300 Rh6AG155100 Rh6BG155700 Rh6CG150900 Rh6DG141000
rosa_wichuraiana	Rw0G012790 Rw1G003340 Rw6G013310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	494
AarI	CACCTGC	1 cut(s)	1027
Acc36I	ACCTGC	1 cut(s)	1027
AccII	CGCG	1 cut(s)	113
AciI	CCGC	2 cut(s)	68, 111
AcsI	RAATTY	5 cut(s)	82, 119, 176, 284, 671
AcvI	CACGTG	1 cut(s)	876
AfaI	GTAC	2 cut(s)	639, 1006
AfiI	CCNNNNNNNGG	3 cut(s)	422, 606, 607
AflII	CTTAAG	1 cut(s)	226
AflIII	ACRYGT	1 cut(s)	1104
AgsI	TTSAA	9 cut(s)	80, 507, 684, 772, 810, 885, 1113, 1151, 1272
AluBI	AGCT	9 cut(s)	148, 266, 311, 564, 623, 736, 749, 947, 1019
AluI	AGCT	9 cut(s)	148, 266, 311, 564, 623, 736, 749, 947, 1019
Alw21I	GWGCWC	2 cut(s)	415, 949
Alw26I	GTCTC	2 cut(s)	165, 318
Alw44I	GTGCAC	1 cut(s)	411
AoxI	GGCC	1 cut(s)	429
ApaLI	GTGCAC	1 cut(s)	411
ApeKI	GCWGC	5 cut(s)	166, 203, 704, 1016, 1252
ApoI	RAATTY	5 cut(s)	82, 119, 176, 284, 671
AseI	ATTAAT	1 cut(s)	821
Asp700I	GAANNNNTTC	3 cut(s)	192, 286, 1267
AspLEI	GCGC	2 cut(s)	115, 530
AspS9I	GGNCC	2 cut(s)	48, 107
AsuC2I	CCSGG	1 cut(s)	601
AsuHPI	GGTGA	3 cut(s)	188, 557, 1240
AvaII	GGWCC	2 cut(s)	48, 107
BaeGI	GKGCMC	2 cut(s)	353, 415
BanII	GRGCYC	2 cut(s)	915, 949
BbrPI	CACGTG	1 cut(s)	876
Bbv12I	GWGCWC	2 cut(s)	415, 949
BbvI	GCAGC	5 cut(s)	153, 190, 691, 1028, 1264
BcnI	CCSGG	1 cut(s)	601
BcoDI	GTCTC	2 cut(s)	165, 318
BfaI	CTAG	4 cut(s)	531, 962, 1206, 1223
BfrI	CTTAAG	1 cut(s)	226
BfuAI	ACCTGC	1 cut(s)	1027
BisI	GCNGC	5 cut(s)	167, 204, 705, 1017, 1253
BlsI	GCNGC	5 cut(s)	168, 205, 706, 1018, 1254
Bme1390I	CCNGG	1 cut(s)	601
Bme18I	GGWCC	2 cut(s)	48, 107
BmgT120I	GGNCC	2 cut(s)	48, 107
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	601
BmsI	GCATC	3 cut(s)	388, 820, 843
BpuMI	CCSGG	1 cut(s)	601
BsaAI	YACGTR	2 cut(s)	641, 876
BsaBI	GATNNNNATC	1 cut(s)	463
BsaI	GGTCTC	2 cut(s)	165, 318
Bsc4I	CCNNNNNNNGG	3 cut(s)	422, 606, 607
Bse1I	ACTGG	2 cut(s)	973, 1066
Bse3DI	GCAATG	4 cut(s)	217, 307, 768, 791
Bse8I	GATNNNNATC	1 cut(s)	463
BseGI	GGATG	1 cut(s)	835
BseJI	GATNNNNATC	1 cut(s)	463
BseLI	CCNNNNNNNGG	3 cut(s)	422, 606, 607
BseMI	GCAATG	4 cut(s)	217, 307, 768, 791
BseMII	CTCAG	3 cut(s)	39, 281, 714
BseNI	ACTGG	2 cut(s)	973, 1066
BseRI	GAGGAG	2 cut(s)	877, 935
BseSI	GKGCMC	2 cut(s)	353, 415
BseXI	GCAGC	5 cut(s)	153, 190, 691, 1028, 1264
BseYI	CCCAGC	1 cut(s)	893
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	431
BsiHKAI	GWGCWC	2 cut(s)	415, 949
BsiSI	CCGG	1 cut(s)	601
BsiWI	CGTACG	1 cut(s)	637
BslFI	GGGAC	1 cut(s)	799
BslI	CCNNNNNNNGG	3 cut(s)	422, 606, 607
BsmAI	GTCTC	2 cut(s)	165, 318
BsmFI	GGGAC	1 cut(s)	799
BsmI	GAATGC	2 cut(s)	338, 1189
BsnI	GGCC	1 cut(s)	431
Bso31I	GGTCTC	2 cut(s)	165, 318
Bsp1286I	GDGCHC	4 cut(s)	353, 415, 915, 949
Bsp1407I	TGTACA	1 cut(s)	1004
Bsp143I	GATC	1 cut(s)	1233
BspACI	CCGC	2 cut(s)	68, 111
BspANI	GGCC	1 cut(s)	431
BspCNI	CTCAG	3 cut(s)	38, 280, 715
BspFNI	CGCG	1 cut(s)	113
BspHI	TCATGA	1 cut(s)	1277
BspLI	GGNNCC	1 cut(s)	109
BspMI	ACCTGC	1 cut(s)	1027
BspTI	CTTAAG	1 cut(s)	226
BspTNI	GGTCTC	2 cut(s)	165, 318
BsrDI	GCAATG	4 cut(s)	217, 307, 768, 791
BsrGI	TGTACA	1 cut(s)	1004
BsrI	ACTGG	2 cut(s)	973, 1066
BssMI	GATC	1 cut(s)	1233
Bst4CI	ACNGT	3 cut(s)	257, 679, 1144
Bst6I	CTCTTC	2 cut(s)	102, 991
BstAFI	CTTAAG	1 cut(s)	226
BstAPI	GCANNNNNTGC	1 cut(s)	60
BstAUI	TGTACA	1 cut(s)	1004
BstBAI	YACGTR	2 cut(s)	641, 876
BstC8I	GCNNGC	5 cut(s)	208, 433, 1044, 1216, 1257
BstDEI	CTNAG	5 cut(s)	25, 267, 565, 626, 723
BstENI	CCTNNNNNAGG	1 cut(s)	420
BstF5I	GGATG	1 cut(s)	835
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	2 cut(s)	115, 530
BstKTI	GATC	1 cut(s)	1236
BstMAI	GTCTC	2 cut(s)	165, 318
BstMBI	GATC	1 cut(s)	1233
BstMWI	GCNNNNNNNGC	6 cut(s)	60, 437, 704, 713, 910, 998
BstNSI	RCATGY	5 cut(s)	490, 502, 1046, 1108, 1214
BstSCI	CCNGG	1 cut(s)	599
BstSLI	GKGCMC	2 cut(s)	353, 415
BstSNI	TACGTA	1 cut(s)	641
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	5 cut(s)	153, 190, 691, 1028, 1264
BsuRI	GGCC	1 cut(s)	431
BtsCI	GGATG	1 cut(s)	835
BtsI	GCAGTG	1 cut(s)	403
BtsIMutI	CAGTG	2 cut(s)	403, 675
BveI	ACCTGC	1 cut(s)	1027
Cac8I	GCNNGC	5 cut(s)	208, 433, 1044, 1216, 1257
CciI	TCATGA	1 cut(s)	1277
CfoI	GCGC	2 cut(s)	115, 530
Cfr13I	GGNCC	2 cut(s)	48, 107
Csp6I	GTAC	2 cut(s)	638, 1005
CviQI	GTAC	2 cut(s)	638, 1005
DdeI	CTNAG	5 cut(s)	25, 267, 565, 626, 723
DpnI	GATC	1 cut(s)	1235
DpnII	GATC	1 cut(s)	1233
DraI	TTTAAA	2 cut(s)	1057, 1074
Eam1104I	CTCTTC	2 cut(s)	102, 991
EarI	CTCTTC	2 cut(s)	102, 991
Ecl136II	GAGCTC	1 cut(s)	947
Eco105I	TACGTA	1 cut(s)	641
Eco147I	AGGCCT	1 cut(s)	431
Eco24I	GRGCYC	2 cut(s)	915, 949
Eco31I	GGTCTC	2 cut(s)	165, 318
Eco47I	GGWCC	2 cut(s)	48, 107
Eco53kI	GAGCTC	1 cut(s)	947
Eco72I	CACGTG	1 cut(s)	876
EcoICRI	GAGCTC	1 cut(s)	947
EcoNI	CCTNNNNNAGG	1 cut(s)	420
EcoRI	GAATTC	1 cut(s)	671
EcoT38I	GRGCYC	2 cut(s)	915, 949
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FaqI	GGGAC	1 cut(s)	799
FauI	CCCGC	1 cut(s)	118
Fnu4HI	GCNGC	5 cut(s)	167, 204, 705, 1017, 1253
FokI	GGATG	1 cut(s)	842
FriOI	GRGCYC	2 cut(s)	915, 949
Fsp4HI	GCNGC	5 cut(s)	167, 204, 705, 1017, 1253
FspBI	CTAG	4 cut(s)	531, 962, 1206, 1223
GlaI	GCGC	2 cut(s)	114, 529
GluI	GCNGC	5 cut(s)	167, 204, 705, 1017, 1253
GsaI	CCCAGC	1 cut(s)	897
HaeIII	GGCC	1 cut(s)	431
HapII	CCGG	1 cut(s)	601
HhaI	GCGC	2 cut(s)	115, 530
Hin6I	GCGC	2 cut(s)	113, 528
HinP1I	GCGC	2 cut(s)	113, 528
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	1 cut(s)	848
HpaII	CCGG	1 cut(s)	601
HphI	GGTGA	3 cut(s)	188, 557, 1240
Hpy166II	GTNNAC	4 cut(s)	131, 413, 731, 978
Hpy188I	TCNGA	5 cut(s)	153, 270, 469, 724, 1098
Hpy188III	TCNNGA	2 cut(s)	1206, 1278
Hpy8I	GTNNAC	4 cut(s)	131, 413, 731, 978
HpyAV	CCTTC	3 cut(s)	236, 416, 1022
HpyCH4III	ACNGT	3 cut(s)	257, 679, 1144
HpyCH4IV	ACGT	4 cut(s)	479, 640, 801, 875
HpyF10VI	GCNNNNNNNGC	6 cut(s)	60, 437, 704, 713, 910, 998
HpyF3I	CTNAG	5 cut(s)	25, 267, 565, 626, 723
HpySE526I	ACGT	4 cut(s)	479, 640, 801, 875
HspAI	GCGC	2 cut(s)	113, 528
Kzo9I	GATC	1 cut(s)	1233
LmnI	GCTCC	4 cut(s)	93, 561, 942, 1223
Lsp1109I	GCAGC	5 cut(s)	153, 190, 691, 1028, 1264
LweI	GCATC	3 cut(s)	388, 820, 843
MaeI	CTAG	4 cut(s)	531, 962, 1206, 1223
MaeII	ACGT	4 cut(s)	479, 640, 801, 875
MaeIII	GTNAC	2 cut(s)	591, 871
MalI	GATC	1 cut(s)	1235
MboI	GATC	1 cut(s)	1233
MboII	GAAGA	3 cut(s)	89, 665, 978
MhlI	GDGCHC	4 cut(s)	353, 415, 915, 949
MluCI	AATT	8 cut(s)	33, 82, 119, 176, 284, 523, 662, 671
MlyI	GAGTC	1 cut(s)	857
MmeI	TCCRAC	1 cut(s)	436
MnlI	CCTC	8 cut(s)	604, 855, 913, 916, 1102, 1126, 1153, 1219
MroXI	GAANNNNTTC	3 cut(s)	192, 286, 1267
MseI	TTAA	7 cut(s)	227, 252, 476, 753, 821, 1056, 1073
MspCI	CTTAAG	1 cut(s)	226
MspI	CCGG	1 cut(s)	601
MspR9I	CCNGG	1 cut(s)	601
Mva1269I	GAATGC	2 cut(s)	338, 1189
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	6 cut(s)	60, 437, 704, 713, 910, 998
NciI	CCSGG	1 cut(s)	601
NdeII	GATC	1 cut(s)	1233
NlaIV	GGNNCC	1 cut(s)	109
NmuCI	GTSAC	2 cut(s)	591, 871
NspI	RCATGY	5 cut(s)	490, 502, 1046, 1108, 1214
PaeI	GCATGC	1 cut(s)	1046
PagI	TCATGA	1 cut(s)	1277
PaqCI	CACCTGC	1 cut(s)	1027
PceI	AGGCCT	1 cut(s)	431
PciI	ACATGT	1 cut(s)	1104
PctI	GAATGC	2 cut(s)	338, 1189
PdmI	GAANNNNTTC	3 cut(s)	192, 286, 1267
Pfl23II	CGTACG	1 cut(s)	637
PkrI	GCNGC	5 cut(s)	168, 205, 706, 1018, 1254
PleI	GAGTC	1 cut(s)	856
PmaCI	CACGTG	1 cut(s)	876
PmlI	CACGTG	1 cut(s)	876
PpsI	GAGTC	1 cut(s)	856
Ppu21I	YACGTR	2 cut(s)	641, 876
PscI	ACATGT	1 cut(s)	1104
PshBI	ATTAAT	1 cut(s)	821
PsiI	TTATAA	1 cut(s)	494
Psp124BI	GAGCTC	1 cut(s)	949
PspCI	CACGTG	1 cut(s)	876
PspFI	CCCAGC	1 cut(s)	893
PspLI	CGTACG	1 cut(s)	637
PspN4I	GGNNCC	1 cut(s)	109
PspPI	GGNCC	2 cut(s)	48, 107
RsaI	GTAC	2 cut(s)	639, 1006
RsaNI	GTAC	2 cut(s)	638, 1005
SacI	GAGCTC	1 cut(s)	949
SaqAI	TTAA	7 cut(s)	227, 252, 476, 753, 821, 1056, 1073
SatI	GCNGC	5 cut(s)	167, 204, 705, 1017, 1253
Sau3AI	GATC	1 cut(s)	1233
Sau96I	GGNCC	2 cut(s)	48, 107
SchI	GAGTC	1 cut(s)	857
ScrFI	CCNGG	1 cut(s)	601
SduI	GDGCHC	4 cut(s)	353, 415, 915, 949
SfaNI	GCATC	3 cut(s)	388, 820, 843
SinI	GGWCC	2 cut(s)	48, 107
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
SnaBI	TACGTA	1 cut(s)	641
SphI	GCATGC	1 cut(s)	1046
Sse9I	AATT	8 cut(s)	33, 82, 119, 176, 284, 523, 662, 671
SseBI	AGGCCT	1 cut(s)	431
SsiI	CCGC	2 cut(s)	68, 111
SspI	AATATT	2 cut(s)	193, 1267
SspMI	CTAG	4 cut(s)	531, 962, 1206, 1223
SstI	GAGCTC	1 cut(s)	949
StuI	AGGCCT	1 cut(s)	431
StyD4I	CCNGG	1 cut(s)	599
TaaI	ACNGT	3 cut(s)	257, 679, 1144
TaiI	ACGT	4 cut(s)	482, 643, 804, 878
TaqI	TCGA	1 cut(s)	851
TasI	AATT	8 cut(s)	33, 82, 119, 176, 284, 523, 662, 671
TatI	WGTACW	1 cut(s)	1004
Tru1I	TTAA	7 cut(s)	227, 252, 476, 753, 821, 1056, 1073
Tru9I	TTAA	7 cut(s)	227, 252, 476, 753, 821, 1056, 1073
TscAI	CASTG	2 cut(s)	403, 682
TseFI	GTSAC	2 cut(s)	591, 871
TseI	GCWGC	5 cut(s)	166, 203, 704, 1016, 1252
Tsp45I	GTSAC	2 cut(s)	591, 871
TspDTI	ATGAA	2 cut(s)	561, 728
TspRI	CASTG	2 cut(s)	403, 682
Vha464I	CTTAAG	1 cut(s)	226
VneI	GTGCAC	1 cut(s)	411
VpaK11BI	GGWCC	2 cut(s)	48, 107
VspI	ATTAAT	1 cut(s)	821
XagI	CCTNNNNNAGG	1 cut(s)	420
XapI	RAATTY	5 cut(s)	82, 119, 176, 284, 671
XbaI	TCTAGA	1 cut(s)	1205
XceI	RCATGY	5 cut(s)	490, 502, 1046, 1108, 1214
XmnI	GAANNNNTTC	3 cut(s)	192, 286, 1267
XspI	CTAG	4 cut(s)	531, 962, 1206, 1223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.