Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G04780 |
| fragaria_vesca | FvH4_7g02270 |
| malus_domestica | MD05G1362900.v1.1 MD05G1363000.v1.1 MD10G1340500.v1.1 |
| prunus_persica | Prupe.2G071000_v2.0.a1 Prupe.2G073400_v2.0.a1 |
| pyrus_communis | pycom05g32940 pycom10g29030 |
| rosa_chinensis | RchiOBHm_Chr1g0319571 RchiOBHm_Chr6g0267541 RchiOBHm_Chr7g0197341 |
| rosa_laevigata | RLG00000030470 |
| rosa_multiflora | Rmu_sc0001522.1_g000010 Rmu_sc0002539.1_g000062 Rmu_sc0031493.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00284250 Rroxscaffold_4G00328280 Rroxscaffold_7G00200640 |
| rosa_rugosa | Rorug01G0028300 Rorug01G0028400 Rorug01G0028500 Rorug01G0028600 Rorug06G0033600 Rorug06G0033600 |
| rosa_samantha | Rh1AG040400 Rh1BG037600 Rh1CG041600 Rh1DG028300 Rh6AG155100 Rh6BG155700 Rh6CG150900 Rh6DG141000 |
| rosa_wichuraiana | Rw0G012790 Rw1G003340 Rw6G013310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 374 |
| AcsI | RAATTY | 4 cut(s) | 79, 277, 370, 402 |
| AgsI | TTSAA | 2 cut(s) | 134, 395 |
| AjnI | CCWGG | 2 cut(s) | 365, 410 |
| AluBI | AGCT | 2 cut(s) | 323, 576 |
| AluI | AGCT | 2 cut(s) | 323, 576 |
| ApoI | RAATTY | 4 cut(s) | 79, 277, 370, 402 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 219, 406 |
| AsuHPI | GGTGA | 1 cut(s) | 80 |
| BccI | CCATC | 1 cut(s) | 35 |
| BceAI | ACGGC | 1 cut(s) | 138 |
| BciT130I | CCWGG | 2 cut(s) | 367, 412 |
| BfaI | CTAG | 1 cut(s) | 75 |
| BfuAI | ACCTGC | 1 cut(s) | 374 |
| Bme1390I | CCNGG | 2 cut(s) | 367, 412 |
| BmrFI | CCNGG | 2 cut(s) | 367, 412 |
| BmrI | ACTGGG | 1 cut(s) | 65 |
| BmsI | GCATC | 4 cut(s) | 61, 84, 175, 216 |
| BmuI | ACTGGG | 1 cut(s) | 65 |
| BpmI | CTGGAG | 1 cut(s) | 119 |
| BsaAI | YACGTR | 1 cut(s) | 338 |
| Bse1I | ACTGG | 1 cut(s) | 60 |
| Bse3DI | GCAATG | 1 cut(s) | 132 |
| BseBI | CCWGG | 2 cut(s) | 367, 412 |
| BseMI | GCAATG | 1 cut(s) | 132 |
| BseMII | CTCAG | 1 cut(s) | 15 |
| BseNI | ACTGG | 1 cut(s) | 60 |
| Bsp143I | GATC | 2 cut(s) | 433, 442 |
| BspCNI | CTCAG | 1 cut(s) | 16 |
| BspMI | ACCTGC | 1 cut(s) | 374 |
| BsrDI | GCAATG | 1 cut(s) | 132 |
| BsrI | ACTGG | 1 cut(s) | 60 |
| BssMI | GATC | 2 cut(s) | 433, 442 |
| Bst2UI | CCWGG | 2 cut(s) | 367, 412 |
| Bst4CI | ACNGT | 2 cut(s) | 109, 487 |
| Bst6I | CTCTTC | 1 cut(s) | 497 |
| BstBAI | YACGTR | 1 cut(s) | 338 |
| BstDEI | CTNAG | 2 cut(s) | 24, 327 |
| BstKTI | GATC | 2 cut(s) | 436, 445 |
| BstMBI | GATC | 2 cut(s) | 433, 442 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 573 |
| BstNI | CCWGG | 2 cut(s) | 367, 412 |
| BstSCI | CCNGG | 2 cut(s) | 365, 410 |
| BstSNI | TACGTA | 1 cut(s) | 338 |
| BtsI | GCAGTG | 1 cut(s) | 12 |
| BtsIMutI | CAGTG | 1 cut(s) | 12 |
| BveI | ACCTGC | 1 cut(s) | 374 |
| CviAII | CATG | 1 cut(s) | 169 |
| CviJI | RGCY | 2 cut(s) | 323, 576 |
| CviKI_1 | RGCY | 2 cut(s) | 323, 576 |
| DdeI | CTNAG | 2 cut(s) | 24, 327 |
| DpnI | GATC | 2 cut(s) | 435, 444 |
| DpnII | GATC | 2 cut(s) | 433, 442 |
| Eam1104I | CTCTTC | 1 cut(s) | 497 |
| EarI | CTCTTC | 1 cut(s) | 497 |
| Eco105I | TACGTA | 1 cut(s) | 338 |
| EcoRI | GAATTC | 1 cut(s) | 370 |
| EcoRII | CCWGG | 2 cut(s) | 365, 410 |
| FaeI | CATG | 1 cut(s) | 172 |
| FatI | CATG | 1 cut(s) | 168 |
| FspBI | CTAG | 1 cut(s) | 75 |
| GsuI | CTGGAG | 1 cut(s) | 119 |
| Hin1II | CATG | 1 cut(s) | 172 |
| HinfI | GANTC | 1 cut(s) | 220 |
| HphI | GGTGA | 1 cut(s) | 80 |
| Hpy188I | TCNGA | 2 cut(s) | 25, 225 |
| Hpy188III | TCNNGA | 5 cut(s) | 243, 428, 437, 446, 499 |
| HpyAV | CCTTC | 3 cut(s) | 54, 128, 209 |
| HpyCH4III | ACNGT | 2 cut(s) | 109, 487 |
| HpyCH4IV | ACGT | 1 cut(s) | 337 |
| HpyCH4V | TGCA | 3 cut(s) | 51, 229, 567 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 573 |
| HpyF3I | CTNAG | 2 cut(s) | 24, 327 |
| HpySE526I | ACGT | 1 cut(s) | 337 |
| Hsp92II | CATG | 1 cut(s) | 172 |
| Kzo9I | GATC | 2 cut(s) | 433, 442 |
| LweI | GCATC | 4 cut(s) | 61, 84, 175, 216 |
| MaeI | CTAG | 1 cut(s) | 75 |
| MaeII | ACGT | 1 cut(s) | 337 |
| MaeIII | GTNAC | 1 cut(s) | 112 |
| MalI | GATC | 2 cut(s) | 435, 444 |
| MboI | GATC | 2 cut(s) | 433, 442 |
| MboII | GAAGA | 7 cut(s) | 399, 443, 452, 461, 464, 514, 551 |
| MluCI | AATT | 5 cut(s) | 79, 157, 277, 370, 402 |
| MnlI | CCTC | 6 cut(s) | 96, 133, 145, 474, 500, 513 |
| MroXI | GAANNNNTTC | 2 cut(s) | 219, 406 |
| MseI | TTAA | 2 cut(s) | 377, 592 |
| MslI | CAYNNNNRTG | 1 cut(s) | 167 |
| MspR9I | CCNGG | 2 cut(s) | 367, 412 |
| MvaI | CCWGG | 2 cut(s) | 367, 412 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 573 |
| NdeII | GATC | 2 cut(s) | 433, 442 |
| NlaIII | CATG | 1 cut(s) | 172 |
| PdmI | GAANNNNTTC | 2 cut(s) | 219, 406 |
| PfeI | GAWTC | 1 cut(s) | 220 |
| PfoI | TCCNGGA | 2 cut(s) | 365, 410 |
| Ppu21I | YACGTR | 1 cut(s) | 338 |
| Psp6I | CCWGG | 2 cut(s) | 365, 410 |
| PspGI | CCWGG | 2 cut(s) | 365, 410 |
| RseI | CAYNNNNRTG | 1 cut(s) | 167 |
| SaqAI | TTAA | 2 cut(s) | 377, 592 |
| Sau3AI | GATC | 2 cut(s) | 433, 442 |
| ScrFI | CCNGG | 2 cut(s) | 367, 412 |
| SetI | ASST | 6 cut(s) | 156, 305, 325, 340, 388, 578 |
| SfaNI | GCATC | 4 cut(s) | 61, 84, 175, 216 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 167 |
| SnaBI | TACGTA | 1 cut(s) | 338 |
| Sse9I | AATT | 5 cut(s) | 79, 157, 277, 370, 402 |
| SspI | AATATT | 1 cut(s) | 587 |
| SspMI | CTAG | 1 cut(s) | 75 |
| StyD4I | CCNGG | 2 cut(s) | 365, 410 |
| TaaI | ACNGT | 2 cut(s) | 109, 487 |
| TaiI | ACGT | 1 cut(s) | 340 |
| TasI | AATT | 5 cut(s) | 79, 157, 277, 370, 402 |
| TfiI | GAWTC | 1 cut(s) | 220 |
| Tru1I | TTAA | 2 cut(s) | 377, 592 |
| Tru9I | TTAA | 2 cut(s) | 377, 592 |
| TscAI | CASTG | 1 cut(s) | 12 |
| TspDTI | ATGAA | 1 cut(s) | 333 |
| TspRI | CASTG | 1 cut(s) | 12 |
| XapI | RAATTY | 4 cut(s) | 79, 277, 370, 402 |
| XmnI | GAANNNNTTC | 2 cut(s) | 219, 406 |
| XspI | CTAG | 1 cut(s) | 75 |