Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003353

Physical Location & Seq

Genomic Coordinates Forward (+)

47777921 .. 47778463

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1362900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAATTTAAATGTCTATGTGGGAACCGCGTTGCTTGACGTTTATGCAAAGTCTGGTTTGATAAAGGATGCAAGCTCTGTTTTTGAGTCTTTGCCAGAGAGGAGTGATGTTACGTGGAGTTCGATGGTTGCCGGGTATGTGCAAAAAGAGCTTTATGAAGCGGCTTTGGTGTTGTTCCATAGAGCTAAAAGCATAGGGTTAGAACAGAACCAGTTTACAGTTTCTTTTGCTATTTGTGCTTGTGCAGGTCTGGCAGCTCTCATTGAAGGAAAGCAGTTGCATGCTCTGTTATCTAAAACTGGCTTTGGTTTGAACGTATTTGTTGTTTCCTCTCTTGTAGACATGTATGCAAAATGTGGTAGCATTAGAGAAGCGTACAGTGTTTTTCAAGGTATGAACGAGAGGAACATTGTTTTATGGAATGCCATGATTTCAGGGTTCGCTAGACATGCTTGCTCACTAGAGGTGATGGTCTTATTTGAGAAAATGCAGCAGATAGGTATGTTCCCGGGCGAAGTAACCTATGCCTGTAGCCACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

181

Amino Acids

19.74

Weight (kDa)

6.06

Isoelectric Point (pI)

37.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	135 - 175	1.8e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04780
fragaria_vesca	FvH4_7g02270
malus_domestica	MD05G1362900.v1.1 MD05G1363000.v1.1 MD10G1340500.v1.1
prunus_persica	Prupe.2G071000_v2.0.a1 Prupe.2G073400_v2.0.a1
pyrus_communis	pycom05g32940 pycom10g29030
rosa_chinensis	RchiOBHm_Chr1g0319571 RchiOBHm_Chr6g0267541 RchiOBHm_Chr7g0197341
rosa_laevigata	RLG00000030470
rosa_multiflora	Rmu_sc0001522.1_g000010 Rmu_sc0002539.1_g000062 Rmu_sc0031493.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284250 Rroxscaffold_4G00328280 Rroxscaffold_7G00200640
rosa_rugosa	Rorug01G0028300 Rorug01G0028400 Rorug01G0028500 Rorug01G0028600 Rorug06G0033600 Rorug06G0033600
rosa_samantha	Rh1AG040400 Rh1BG037600 Rh1CG041600 Rh1DG028300 Rh6AG155100 Rh6BG155700 Rh6CG150900 Rh6DG141000
rosa_wichuraiana	Rw0G012790 Rw1G003340 Rw6G013310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	236
AccI	GTMKAC	1 cut(s)	339
AccII	CGCG	1 cut(s)	29
AciI	CCGC	2 cut(s)	27, 161
AcsI	RAATTY	1 cut(s)	4
AfaI	GTAC	1 cut(s)	377
AflIII	ACRYGT	2 cut(s)	342, 537
AgsI	TTSAA	3 cut(s)	266, 313, 389
AluBI	AGCT	4 cut(s)	75, 151, 185, 257
AluI	AGCT	4 cut(s)	75, 151, 185, 257
Ama87I	CYCGRG	1 cut(s)	508
ApeKI	GCWGC	2 cut(s)	254, 490
ApoI	RAATTY	1 cut(s)	4
AsuC2I	CCSGG	3 cut(s)	133, 509, 510
AsuHPI	GGTGA	1 cut(s)	478
AvaI	CYCGRG	1 cut(s)	508
BbvI	GCAGC	2 cut(s)	266, 502
BccI	CCATC	2 cut(s)	118, 463
BcnI	CCSGG	3 cut(s)	133, 509, 510
BfaI	CTAG	2 cut(s)	444, 461
BfmI	CTRYAG	1 cut(s)	529
BfuAI	ACCTGC	1 cut(s)	236
BisI	GCNGC	3 cut(s)	162, 255, 491
BlsI	GCNGC	3 cut(s)	163, 256, 492
Bme1390I	CCNGG	3 cut(s)	133, 509, 510
BmeT110I	CYCGRG	1 cut(s)	508
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	3 cut(s)	133, 509, 510
BmsI	GCATC	1 cut(s)	58
BpuMI	CCSGG	3 cut(s)	133, 509, 510
BsaAI	YACGTR	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	508
Bse1I	ACTGG	2 cut(s)	211, 304
BseDI	CCNNGG	1 cut(s)	508
BseGI	GGATG	1 cut(s)	73
BseNI	ACTGG	2 cut(s)	211, 304
BseRI	GAGGAG	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	266, 502
BsgI	GTGCAG	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	508
BsiSI	CCGG	2 cut(s)	132, 509
BsmI	GAATGC	1 cut(s)	427
BsoBI	CYCGRG	1 cut(s)	508
BspACI	CCGC	2 cut(s)	27, 161
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	25
BspMI	ACCTGC	1 cut(s)	236
BsrI	ACTGG	2 cut(s)	211, 304
BssECI	CCNNGG	1 cut(s)	508
Bst4CI	ACNGT	2 cut(s)	220, 380
BstBAI	YACGTR	1 cut(s)	114
BstC8I	GCNNGC	3 cut(s)	73, 282, 454
BstF5I	GGATG	1 cut(s)	73
BstFNI	CGCG	1 cut(s)	29
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 236, 251, 449
BstNSI	RCATGY	4 cut(s)	284, 346, 452, 541
BstSCI	CCNGG	3 cut(s)	131, 507, 508
BstSFI	CTRYAG	1 cut(s)	529
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	266, 502
BtsCI	GGATG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	385
BveI	ACCTGC	1 cut(s)	236
Cac8I	GCNNGC	3 cut(s)	73, 282, 454
Cfr9I	CCCGGG	1 cut(s)	508
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	5 cut(s)	281, 343, 427, 449, 538
CviJI	RGCY	7 cut(s)	75, 151, 164, 185, 257, 303, 534
CviKI_1	RGCY	7 cut(s)	75, 151, 164, 185, 257, 303, 534
CviQI	GTAC	1 cut(s)	376
DraI	TTTAAA	1 cut(s)	9
Eco88I	CYCGRG	1 cut(s)	508
FaeI	CATG	5 cut(s)	284, 346, 430, 452, 541
FatI	CATG	5 cut(s)	280, 342, 426, 448, 537
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	3 cut(s)	162, 255, 491
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	3 cut(s)	162, 255, 491
FspBI	CTAG	2 cut(s)	444, 461
GluI	GCNGC	3 cut(s)	162, 255, 491
HapII	CCGG	2 cut(s)	132, 509
Hin1II	CATG	5 cut(s)	284, 346, 430, 452, 541
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	2 cut(s)	132, 509
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	2 cut(s)	216, 340
Hpy8I	GTNNAC	2 cut(s)	216, 340
HpyAV	CCTTC	1 cut(s)	260
HpyCH4III	ACNGT	2 cut(s)	220, 380
HpyCH4IV	ACGT	3 cut(s)	39, 113, 315
HpyCH4V	TGCA	7 cut(s)	47, 71, 142, 245, 280, 350, 490
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 236, 251, 449
HpySE526I	ACGT	3 cut(s)	39, 113, 315
Hsp92II	CATG	5 cut(s)	284, 346, 430, 452, 541
LpnPI	CCDG	9 cut(s)	39, 108, 145, 224, 231, 236, 285, 420, 522
Lsp1109I	GCAGC	2 cut(s)	266, 502
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	2 cut(s)	444, 461
MaeII	ACGT	3 cut(s)	39, 113, 315
MaeIII	GTNAC	2 cut(s)	109, 517
MluCI	AATT	1 cut(s)	4
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	4 cut(s)	93, 340, 396, 457
MseI	TTAA	1 cut(s)	8
MspI	CCGG	2 cut(s)	132, 509
MspR9I	CCNGG	3 cut(s)	133, 509, 510
Mva1269I	GAATGC	1 cut(s)	427
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	4 cut(s)	148, 236, 251, 449
NciI	CCSGG	3 cut(s)	133, 509, 510
NlaIII	CATG	5 cut(s)	284, 346, 430, 452, 541
NlaIV	GGNNCC	1 cut(s)	25
NspI	RCATGY	4 cut(s)	284, 346, 452, 541
PaeI	GCATGC	1 cut(s)	284
PciI	ACATGT	2 cut(s)	342, 537
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PctI	GAATGC	1 cut(s)	427
PkrI	GCNGC	3 cut(s)	163, 256, 492
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Ppu21I	YACGTR	1 cut(s)	114
PscI	ACATGT	2 cut(s)	342, 537
PspN4I	GGNNCC	1 cut(s)	25
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	3 cut(s)	162, 255, 491
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	3 cut(s)	133, 509, 510
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	1 cut(s)	529
SmaI	CCCGGG	1 cut(s)	510
SmiI	ATTTAAAT	1 cut(s)	9
SphI	GCATGC	1 cut(s)	284
Sse9I	AATT	1 cut(s)	4
SsiI	CCGC	2 cut(s)	27, 161
SspMI	CTAG	2 cut(s)	444, 461
StyD4I	CCNGG	3 cut(s)	131, 507, 508
SwaI	ATTTAAAT	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	220, 380
TaiI	ACGT	3 cut(s)	42, 116, 318
TaqI	TCGA	1 cut(s)	122
TasI	AATT	1 cut(s)	4
TauI	GCSGC	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TscAI	CASTG	1 cut(s)	385
TseI	GCWGC	2 cut(s)	254, 490
TspDTI	ATGAA	3 cut(s)	17, 171, 410
TspMI	CCCGGG	1 cut(s)	508
TspRI	CASTG	1 cut(s)	385
XapI	RAATTY	1 cut(s)	4
XceI	RCATGY	4 cut(s)	284, 346, 452, 541
XmaI	CCCGGG	1 cut(s)	508
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	2 cut(s)	444, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.