Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003353

Physical Location & Seq

Genomic Coordinates Reverse (-)

25186531 .. 25190575

Gene Structure 4045 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG155700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1878 bp

ATGAGAACCTTAAGGAGATACAAGGAAGGATTGTTTAACAGTAGCACAGCTCAGATATATTGTAGAAAATTCTCAGCCATTGGCAATGCTAAAGCTGATAGACCCAGAGACCAAGAATGCCTTGTTTGGTGTGGCACAAGTGCCACTCATATATCGCTTTTGCATCAAATCTTGCAAAGCAGTGCAAGAACAGGTGCACCTATGGAAGGAAAGGCCTGCCATGCACAGAGTATTTGTGTTGGATTACAATCGGACACTTTAACGTCTAACATGCTTATTAACATGTATTCAAAATGTGGCTTACATAATTGCGCTAGAAAAGTATTTGATGAAATGCCTGAAAGGAGCTTAGTTTCATGGAATACTATGATTGGGTCACTTGCCCGGAATGGGGAGGAACAAGAAGCTCTCAGTGTTTTCGTACGTATGCAAAGAGAAGAAAACCAATTTAGTGAATTCACTGTTTCAAGTGTTCTTTTCGCTTGTGCTGCGAAATGTGCTGTGTCTGAGTGTAAACAGCTTCATGCTTTTGCTATTAAGGTAGCAATGGTTTTGAATGTCTATGTGGGGACTGCATTGCTTGACGTTTATTCAAAGGCTGGATTGATAAAGGACGCAAGTTTTGTTTTTGAGTCGATGCCAGAGAGGAGTGATGTCACGTGGAGTTCAATGGTTGCTGGGTATGCGCAAAATGGGCTCTATGAAGAGGCTTTGGTGTTGCTCCACAGAGCTCAAATGATAGGACTAGAACATAACCAGTTTACAATCTCTTCTGCTATTTGTGCTTGTGCAGGTCTGGCAGCTTTGATAGAAGGGAAGCAGGTGCATGCCTTGTTGTTTAAAACTGGATTTGGTTTAAATATCTATATCGTTTCCTCTCTGATAGACATGTATTCAAAATGTGGTAGCATTGGAGAAGCATACACCGTGTTTCAAGGTATGGAGGACAGGAACACTATTTTGTGGAATGCCATGATTTCTGGGTTTTCTAGACATGCTTGCTCCCTAGAGGTGATGATCTTATTTGAGAAAATGCAGCAGGCAGGTATGCTCCCAAGTGAAGTAGTGTATATATCTGTATTAACTGCTTGTAGTCATATGGGATTGGTTGAAAGTGGAAGGAAATATTTCAACCTCATGATAACAGAACACAATGTGTCCCCAAATTTTGTTCACTATGCATGCATGGTTGATATTTTTGGTCGGTCAGGGTTGATTCTTGAAGCCCATAATTTGATTGAGAATATGCCATTTGATGCTACTGCTTCTATGTGGGGTTCACTGTTAGCTTCTTGTAGGATCCATGGAAATTTTCATTTAGCTGAGATAGCAGCTAAGCATTTGTCTGAGATAGAACCGAACAATGCAGGGAACCTCATTTTGTTGTCAAATATTTATGCAGCAAATAATAAGTGGGAGGAGGTTGCAAGAACAAGGAAGCTTCTTAAAGAAAGTGAGTTGAAGAAGGAAAGAGGGAAGAGTTGGATTGAAATCAAGGACAAAGTTCACTCATTTATGGTCGGAGAGAGAAAACATCCTAGAATTGCTGAGATATACTCTAAGTTAGACCAATTGGTGGAAAAATTAAGGATGATGGGTTACAAGGCTGAGATTGAACATGATCTTCATTATGTCGAAGAGAGCAGAAAACATGAACTTCTGAGGCACCATAGTGAAAAACTTGCTCTTACTTTTGGGTTGATGTGCTTACCCTCCAATGCACCTATCAGGATCATGAAGAATCTTAGAATTTGTGGGGATTGTCATTCTTTTATGAAGATCGCATCAAGTTGTTTGGGGAGGGAAATCATTGTCAGGGATACTAAAAGGTTTCACCATTTCAAAAATGCTTTTTGCTCTTGTCAGGAATTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

625

Amino Acids

70.31

Weight (kDa)

8.11

Isoelectric Point (pI)

50.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	116 - 163	1.3e-06	PPR repeat family
PPR	PF01535	118 - 146	6.5e-07	PPR repeat
PPR_2	PF13041	318 - 365	3.5e-06	PPR repeat family
E_motif	PF20431	435 - 497	1.6e-19	E motif
DYW_deaminase	PF14432	533 - 625	3.5e-36	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04780
fragaria_vesca	FvH4_7g02270
malus_domestica	MD05G1362900.v1.1 MD05G1363000.v1.1 MD10G1340500.v1.1
prunus_persica	Prupe.2G071000_v2.0.a1 Prupe.2G073400_v2.0.a1
pyrus_communis	pycom05g32940 pycom10g29030
rosa_chinensis	RchiOBHm_Chr1g0319571 RchiOBHm_Chr6g0267541 RchiOBHm_Chr7g0197341
rosa_laevigata	RLG00000030470
rosa_multiflora	Rmu_sc0001522.1_g000010 Rmu_sc0002539.1_g000062 Rmu_sc0031493.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284250 Rroxscaffold_4G00328280 Rroxscaffold_7G00200640
rosa_rugosa	Rorug01G0028300 Rorug01G0028400 Rorug01G0028500 Rorug01G0028600 Rorug06G0033600 Rorug06G0033600
rosa_samantha	Rh1AG040400 Rh1BG037600 Rh1CG041600 Rh1DG028300 Rh6AG155100 Rh6BG155700 Rh6CG150900 Rh6DG141000
rosa_wichuraiana	Rw0G012790 Rw1G003340 Rw6G013310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	811
Acc16I	TGCGCA	1 cut(s)	687
Acc36I	ACCTGC	3 cut(s)	782, 811, 1034
AccB1I	GGYRCC	1 cut(s)	1665
AccB7I	CCANNNNNTGG	1 cut(s)	1576
AclWI	GGATC	3 cut(s)	1294, 1307, 1739
AcsI	RAATTY	6 cut(s)	68, 455, 1165, 1309, 1749, 1868
AcvI	CACGTG	1 cut(s)	660
AdeI	CACNNNGTG	1 cut(s)	1156
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	4 cut(s)	206, 390, 391, 1576
AflII	CTTAAG	1 cut(s)	10
AflIII	ACRYGT	2 cut(s)	282, 888
AleI	CACNNNNGTG	1 cut(s)	1671
Alw21I	GWGCWC	2 cut(s)	199, 733
Alw26I	GTCTC	1 cut(s)	102
Alw44I	GTGCAC	1 cut(s)	195
AlwI	GGATC	3 cut(s)	1294, 1307, 1739
AoxI	GGCC	1 cut(s)	213
ApaLI	GTGCAC	1 cut(s)	195
ApeKI	GCWGC	5 cut(s)	488, 800, 1036, 1331, 1400
ApoI	RAATTY	6 cut(s)	68, 455, 1165, 1309, 1749, 1868
ArsI	GACNNNNNNTTYG	2 cut(s)	605, 637
Asp700I	GAANNNNTTC	1 cut(s)	1127
AspLEI	GCGC	2 cut(s)	314, 688
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	2 cut(s)	1024, 1826
BaeGI	GKGCMC	1 cut(s)	199
BamHI	GGATCC	1 cut(s)	1299
BanI	GGYRCC	1 cut(s)	1665
BanII	GRGCYC	2 cut(s)	699, 733
BbrPI	CACGTG	1 cut(s)	660
Bbv12I	GWGCWC	2 cut(s)	199, 733
BbvI	GCAGC	5 cut(s)	475, 812, 1048, 1343, 1412
BccI	CCATC	1 cut(s)	1588
BciVI	GTATCC	1 cut(s)	1813
BcnI	CCSGG	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	5 cut(s)	315, 746, 990, 1007, 1539
BfrI	CTTAAG	1 cut(s)	10
BfuAI	ACCTGC	3 cut(s)	782, 811, 1034
BfuI	GTATCC	1 cut(s)	1813
BisI	GCNGC	5 cut(s)	489, 801, 1037, 1332, 1401
BlpI	GCTNAGC	1 cut(s)	1335
BlsI	GCNGC	5 cut(s)	490, 802, 1038, 1333, 1402
Bme1390I	CCNGG	1 cut(s)	385
BmiI	GGNNCC	3 cut(s)	1301, 1373, 1667
BmrFI	CCNGG	1 cut(s)	385
BmsI	GCATC	4 cut(s)	172, 627, 1246, 1793
BplI	GAGNNNNNCTC	2 cut(s)	1541, 1573
Bpu1102I	GCTNAGC	1 cut(s)	1335
BpuMI	CCSGG	1 cut(s)	385
BsaAI	YACGTR	2 cut(s)	425, 660
BsaBI	GATNNNNATC	2 cut(s)	247, 1490
BsaI	GGTCTC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	1303
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 390, 391, 1576
Bse1I	ACTGG	2 cut(s)	757, 850
Bse3DI	GCAATG	3 cut(s)	91, 552, 575
Bse8I	GATNNNNATC	2 cut(s)	247, 1490
BseDI	CCNNGG	1 cut(s)	1303
BseGI	GGATG	2 cut(s)	1534, 1596
BseJI	GATNNNNATC	2 cut(s)	247, 1490
BseLI	CCNNNNNNNGG	4 cut(s)	206, 390, 391, 1576
BseMI	GCAATG	3 cut(s)	91, 552, 575
BseMII	CTCAG	9 cut(s)	65, 87, 424, 498, 1314, 1338, 1539, 1599, 1652
BseNI	ACTGG	2 cut(s)	757, 850
BseRI	GAGGAG	2 cut(s)	661, 1433
BseSI	GKGCMC	1 cut(s)	199
BseXI	GCAGC	5 cut(s)	475, 812, 1048, 1343, 1412
BseYI	CCCAGC	1 cut(s)	677
BsgI	GTGCAG	1 cut(s)	810
BshFI	GGCC	1 cut(s)	215
BshNI	GGYRCC	1 cut(s)	1665
BsiHKAI	GWGCWC	2 cut(s)	199, 733
BsiSI	CCGG	1 cut(s)	385
BsiWI	CGTACG	1 cut(s)	421
BslFI	GGGAC	2 cut(s)	583, 1144
BslI	CCNNNNNNNGG	4 cut(s)	206, 390, 391, 1576
BsmAI	GTCTC	1 cut(s)	102
BsmFI	GGGAC	2 cut(s)	583, 1144
BsmI	GAATGC	2 cut(s)	122, 973
BsnI	GGCC	1 cut(s)	215
Bso31I	GGTCTC	1 cut(s)	102
Bsp1286I	GDGCHC	3 cut(s)	199, 699, 733
Bsp143I	GATC	5 cut(s)	1017, 1299, 1621, 1731, 1779
Bsp1720I	GCTNAGC	1 cut(s)	1335
Bsp19I	CCATGG	1 cut(s)	1303
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	9 cut(s)	64, 86, 423, 499, 1315, 1339, 1540, 1600, 1653
BspHI	TCATGA	2 cut(s)	1137, 1734
BspLI	GGNNCC	3 cut(s)	1301, 1373, 1667
BspMI	ACCTGC	3 cut(s)	782, 811, 1034
BspPI	GGATC	3 cut(s)	1294, 1307, 1739
BspT107I	GGYRCC	1 cut(s)	1665
BspTI	CTTAAG	1 cut(s)	10
BspTNI	GGTCTC	1 cut(s)	102
BsrDI	GCAATG	3 cut(s)	91, 552, 575
BsrI	ACTGG	2 cut(s)	757, 850
BssECI	CCNNGG	1 cut(s)	1303
BssMI	GATC	5 cut(s)	1017, 1299, 1621, 1731, 1779
BssT1I	CCWWGG	1 cut(s)	1303
Bst4CI	ACNGT	4 cut(s)	41, 463, 928, 1284
Bst6I	CTCTTC	4 cut(s)	699, 775, 1472, 1632
BstAFI	CTTAAG	1 cut(s)	10
BstBAI	YACGTR	2 cut(s)	425, 660
BstC8I	GCNNGC	5 cut(s)	217, 828, 1000, 1041, 1183
BstDSI	CCRYGG	1 cut(s)	1303
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	1534, 1596
BstHHI	GCGC	2 cut(s)	314, 688
BstKTI	GATC	5 cut(s)	1020, 1302, 1624, 1734, 1782
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	5 cut(s)	1017, 1299, 1621, 1731, 1779
BstMWI	GCNNNNNNNGC	8 cut(s)	221, 488, 497, 683, 694, 782, 797, 1328
BstNSI	RCATGY	6 cut(s)	274, 286, 830, 892, 998, 1185
BstSCI	CCNGG	1 cut(s)	383
BstSLI	GKGCMC	1 cut(s)	199
BstSNI	TACGTA	1 cut(s)	425
BstV1I	GCAGC	5 cut(s)	475, 812, 1048, 1343, 1412
BstX2I	RGATCY	1 cut(s)	1299
BstYI	RGATCY	1 cut(s)	1299
BsuI	GTATCC	1 cut(s)	1813
BsuRI	GGCC	1 cut(s)	215
BtgI	CCRYGG	1 cut(s)	1303
BtsCI	GGATG	2 cut(s)	1534, 1596
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	4 cut(s)	187, 418, 459, 1280
BveI	ACCTGC	3 cut(s)	782, 811, 1034
Cac8I	GCNNGC	5 cut(s)	217, 828, 1000, 1041, 1183
CciI	TCATGA	2 cut(s)	1137, 1734
CfoI	GCGC	2 cut(s)	314, 688
CseI	GACGC	1 cut(s)	623
Csp6I	GTAC	1 cut(s)	422
CviQI	GTAC	1 cut(s)	422
DpnI	GATC	5 cut(s)	1019, 1301, 1623, 1733, 1781
DpnII	GATC	5 cut(s)	1017, 1299, 1621, 1731, 1779
DraI	TTTAAA	2 cut(s)	841, 858
DraIII	CACNNNGTG	1 cut(s)	1156
Eam1104I	CTCTTC	4 cut(s)	699, 775, 1472, 1632
EarI	CTCTTC	4 cut(s)	699, 775, 1472, 1632
Ecl136II	GAGCTC	1 cut(s)	731
Eco105I	TACGTA	1 cut(s)	425
Eco130I	CCWWGG	1 cut(s)	1303
Eco147I	AGGCCT	1 cut(s)	215
Eco24I	GRGCYC	2 cut(s)	699, 733
Eco31I	GGTCTC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	731
Eco72I	CACGTG	1 cut(s)	660
EcoICRI	GAGCTC	1 cut(s)	731
EcoNI	CCTNNNNNAGG	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	455
EcoT14I	CCWWGG	1 cut(s)	1303
EcoT22I	ATGCAT	2 cut(s)	1183, 1187
EcoT38I	GRGCYC	2 cut(s)	699, 733
ErhI	CCWWGG	1 cut(s)	1303
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FaqI	GGGAC	2 cut(s)	583, 1144
FauNDI	CATATG	1 cut(s)	1098
Fnu4HI	GCNGC	5 cut(s)	489, 801, 1037, 1332, 1401
FokI	GGATG	2 cut(s)	1521, 1603
FriOI	GRGCYC	2 cut(s)	699, 733
Fsp4HI	GCNGC	5 cut(s)	489, 801, 1037, 1332, 1401
FspBI	CTAG	5 cut(s)	315, 746, 990, 1007, 1539
FspI	TGCGCA	1 cut(s)	687
GlaI	GCGC	2 cut(s)	313, 687
GluI	GCNGC	5 cut(s)	489, 801, 1037, 1332, 1401
GsaI	CCCAGC	1 cut(s)	681
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	1 cut(s)	385
HgaI	GACGC	1 cut(s)	623
HhaI	GCGC	2 cut(s)	314, 688
Hin6I	GCGC	2 cut(s)	312, 686
HinP1I	GCGC	2 cut(s)	312, 686
HindIII	AAGCTT	1 cut(s)	1439
HinfI	GANTC	3 cut(s)	632, 1216, 1741
HpaII	CCGG	1 cut(s)	385
HphI	GGTGA	2 cut(s)	1024, 1826
Hpy166II	GTNNAC	6 cut(s)	197, 515, 762, 1174, 1280, 1507
Hpy188I	TCNGA	7 cut(s)	54, 253, 508, 882, 1348, 1523, 1662
Hpy188III	TCNNGA	6 cut(s)	990, 1138, 1220, 1729, 1735, 1865
Hpy8I	GTNNAC	6 cut(s)	197, 515, 762, 1174, 1280, 1507
HpyAV	CCTTC	5 cut(s)	20, 200, 806, 1113, 1459
HpyCH4III	ACNGT	4 cut(s)	41, 463, 928, 1284
HpyCH4IV	ACGT	4 cut(s)	263, 424, 585, 659
HpyF10VI	GCNNNNNNNGC	8 cut(s)	221, 488, 497, 683, 694, 782, 797, 1328
HpySE526I	ACGT	4 cut(s)	263, 424, 585, 659
HspAI	GCGC	2 cut(s)	312, 686
Kzo9I	GATC	5 cut(s)	1017, 1299, 1621, 1731, 1779
LmnI	GCTCC	4 cut(s)	345, 726, 1007, 1056
Lsp1109I	GCAGC	5 cut(s)	475, 812, 1048, 1343, 1412
LweI	GCATC	4 cut(s)	172, 627, 1246, 1793
MaeI	CTAG	5 cut(s)	315, 746, 990, 1007, 1539
MaeII	ACGT	4 cut(s)	263, 424, 585, 659
MaeIII	GTNAC	3 cut(s)	375, 655, 1598
MalI	GATC	5 cut(s)	1019, 1301, 1623, 1733, 1781
MboI	GATC	5 cut(s)	1017, 1299, 1621, 1731, 1779
MboII	GAAGA	9 cut(s)	449, 716, 762, 1474, 1489, 1616, 1649, 1750, 1789
MfeI	CAATTG	1 cut(s)	1571
MflI	RGATCY	1 cut(s)	1299
MhlI	GDGCHC	3 cut(s)	199, 699, 733
MlyI	GAGTC	1 cut(s)	641
MmeI	TCCRAC	3 cut(s)	220, 1463, 1501
Mph1103I	ATGCAT	2 cut(s)	1183, 1187
MroXI	GAANNNNTTC	1 cut(s)	1127
MslI	CAYNNNNRTG	1 cut(s)	1671
MspCI	CTTAAG	1 cut(s)	10
MspI	CCGG	1 cut(s)	385
MspR9I	CCNGG	1 cut(s)	385
MunI	CAATTG	1 cut(s)	1571
Mva1269I	GAATGC	2 cut(s)	122, 973
MwoI	GCNNNNNNNGC	8 cut(s)	221, 488, 497, 683, 694, 782, 797, 1328
NciI	CCSGG	1 cut(s)	385
NcoI	CCATGG	1 cut(s)	1303
NdeI	CATATG	1 cut(s)	1098
NdeII	GATC	5 cut(s)	1017, 1299, 1621, 1731, 1779
NlaIV	GGNNCC	3 cut(s)	1301, 1373, 1667
NmuCI	GTSAC	2 cut(s)	375, 655
NsbI	TGCGCA	1 cut(s)	687
NsiI	ATGCAT	2 cut(s)	1183, 1187
NspI	RCATGY	6 cut(s)	274, 286, 830, 892, 998, 1185
OliI	CACNNNNGTG	1 cut(s)	1671
PaeI	GCATGC	2 cut(s)	830, 1185
PagI	TCATGA	2 cut(s)	1137, 1734
PaqCI	CACCTGC	1 cut(s)	811
PceI	AGGCCT	1 cut(s)	215
PciI	ACATGT	2 cut(s)	282, 888
PctI	GAATGC	2 cut(s)	122, 973
PdmI	GAANNNNTTC	1 cut(s)	1127
PfeI	GAWTC	2 cut(s)	1216, 1741
Pfl23II	CGTACG	1 cut(s)	421
PflMI	CCANNNNNTGG	1 cut(s)	1576
PkrI	GCNGC	5 cut(s)	490, 802, 1038, 1333, 1402
PleI	GAGTC	1 cut(s)	640
PmaCI	CACGTG	1 cut(s)	660
PmlI	CACGTG	1 cut(s)	660
PpsI	GAGTC	1 cut(s)	640
Ppu21I	YACGTR	2 cut(s)	425, 660
PscI	ACATGT	2 cut(s)	282, 888
Psp124BI	GAGCTC	1 cut(s)	733
PspCI	CACGTG	1 cut(s)	660
PspFI	CCCAGC	1 cut(s)	677
PspLI	CGTACG	1 cut(s)	421
PspN4I	GGNNCC	3 cut(s)	1301, 1373, 1667
PsuI	RGATCY	1 cut(s)	1299
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
RseI	CAYNNNNRTG	1 cut(s)	1671
SacI	GAGCTC	1 cut(s)	733
SatI	GCNGC	5 cut(s)	489, 801, 1037, 1332, 1401
Sau3AI	GATC	5 cut(s)	1017, 1299, 1621, 1731, 1779
SchI	GAGTC	1 cut(s)	641
ScrFI	CCNGG	1 cut(s)	385
SduI	GDGCHC	3 cut(s)	199, 699, 733
SfaNI	GCATC	4 cut(s)	172, 627, 1246, 1793
SmiMI	CAYNNNNRTG	1 cut(s)	1671
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SnaBI	TACGTA	1 cut(s)	425
SphI	GCATGC	2 cut(s)	830, 1185
SseBI	AGGCCT	1 cut(s)	215
SspI	AATATT	2 cut(s)	1127, 1393
SspMI	CTAG	5 cut(s)	315, 746, 990, 1007, 1539
SstI	GAGCTC	1 cut(s)	733
StuI	AGGCCT	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	383
StyI	CCWWGG	1 cut(s)	1303
TaaI	ACNGT	4 cut(s)	41, 463, 928, 1284
TaiI	ACGT	4 cut(s)	266, 427, 588, 662
TaqI	TCGA	2 cut(s)	635, 1635
TaqII	GACCGA	1 cut(s)	1194
TfiI	GAWTC	2 cut(s)	1216, 1741
TscAI	CASTG	4 cut(s)	187, 418, 466, 1287
TseFI	GTSAC	2 cut(s)	375, 655
TseI	GCWGC	5 cut(s)	488, 800, 1036, 1331, 1400
Tsp45I	GTSAC	2 cut(s)	375, 655
TspDTI	ATGAA	9 cut(s)	345, 345, 512, 717, 1304, 1616, 1668, 1751, 1790
TspRI	CASTG	4 cut(s)	187, 418, 466, 1287
Van91I	CCANNNNNTGG	1 cut(s)	1576
Vha464I	CTTAAG	1 cut(s)	10
VneI	GTGCAC	1 cut(s)	195
XagI	CCTNNNNNAGG	1 cut(s)	204
XapI	RAATTY	6 cut(s)	68, 455, 1165, 1309, 1749, 1868
XbaI	TCTAGA	1 cut(s)	989
XceI	RCATGY	6 cut(s)	274, 286, 830, 892, 998, 1185
XmnI	GAANNNNTTC	1 cut(s)	1127
XspI	CTAG	5 cut(s)	315, 746, 990, 1007, 1539
Zsp2I	ATGCAT	2 cut(s)	1183, 1187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.