Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003353

Physical Location & Seq

Genomic Coordinates Reverse (-)

24165889 .. 24169172

Gene Structure 3284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG155100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2040 bp

ATGCCCAGCAATGAGCAACCCATTCAAAATTTGCTCCAAACTCTTTTACTTGAACCCGCGCCTAAATTTCCTTGTGAACTTGGGATTACAAAGCTTCCAATTGGGTCTGTTCTGCCATATAAATTCCACAAGGAAAAGATTCACCATGCTGCAAGCAATGGTATGAGAACCTTAAGGAGATACAAGGAAGGATTGTTTAACAGTAGCACAGCTCAGATATATTGTAGAAAATTCTCAGCCATTGGCAATGCTAAAGCTGATAGACCCAGAGACCAAGAATGCCTTGTTTGGTGTGGCACAAGTGCCACTCATATATCACTTTTGCATCAAATCTTGAAAAGCAGTGCAAGAACAGGTGCACCTATGGAAGGAAAGGCCTGCCATGCACAGAGTATTTGTGTTGGATTACAATCAGACACTTTAACGTCTAACATGCTTATTAACGTGTATTCAAAATGCGGCTTACATAATTGCGCTAGAAAAGTATTTGATGAAATGCCTGAAAGGAGCTTAGTTTCATGGAATACTATGATTGGGTCACTTGCCCGGAATGGGGAGGAACAAGAAGCTCTCAGTGTTTTCGTACGTATGCAAAGAGAAGAAAACCAATTTAGTGAATTCACTGTTTCAAGTGTTCTTTTCGCTTGTGCTGCGAAATGTGCTGTGTCTGAGTGTAAACAGCTTCATGCTTTTGCTATTAAGGTAGCAATGGTTTTGAATGTCTATGTGGGGACTGCATTGCTTGACGTTTATTCAAAGGCTGGATTGATAAAGGATGCAAGTTTTGTTTTTGAGTCGATGCCAGAGAGGAGTGATGTCACGTGGAGTTCAATGGTTGCTGGGTATGCGCAAAATGGGCTCTATGAAGAGGCTTTGGTGTTGCTCCACAGAGCTCAAATGATAGGACTAGAACATAACCAGTTTACAATCTCTTCTGCTATTTGTGCTTGTGCAGGTCTGGCAGCTTTGATAGAAGGGAAGCAGGTGCATGCCTTGTTGTTTAAAACTGGATTTGGTTTAAATATCTATATCGTTTCCTCTCTGATAGACATGTATTCAAAATGTGGTAGCATTGGAGAAGCATACACCGTGTTTCAAGGTATGGAGGACAGGAACACTATTTTGTGGAATGCCATGATTTCTGGGTTTTCTAGACATGCTTGCTCCCTAGAGGTGATGATCTTATTTGAGAAAATGCAGCAGGCAGGTATGCTCCCAAGTGAAGTAGCGTATATATCTGTATTAACTGCTTGTAGTCATATGGGATTGGTTGAAAGTGGAAGGAAATATTTCAACCTCATGATAACAGAACACAATGTGTCCCCAAATTTTGTTCACTATGCATGCATGGTTGATATTTTTGGTCGGTCAGGGTTGATTCTTGAAGCCCATAATTTGATTGAGAATATGCCATTTGATGCTACTGCTTCTATGTGGGGTTCACTGTTAGCTTCTTGTAGGATCCATGGAAATTTTCATTTAGCTGAGATAGCAGCTAAGCATTTGTCTGAGATAGAACCGAACAATGCAGGGAACCTCATTTTGTTGTCAAATATTTATGCAGCAAATAATAAGTGGGAGGAGGTTGCAAGAACAAGGAAGCTTCTTAAAGAAAGTGAGTTGAAGAAGGAAAGAGGGAAGAGTTGGATTGAAATCAAGGACAAAGTTCACTCATTTATGGTCGGAGAGAGAAAACATCCTAGAATTGCTGAGATATACTCTAAGTTAGACCAATTGGTGGAAAAATTAAGGATGATTGGTTACAAGGCTGAGATTGAACATGATCTTCATTATGTCGAAGAGAGCAGAAAACATGAACTTCTGAGGCACCATAGTGAAAAACTTGCTCTTACTTTTGGGTTGATGTGCTTACCCTCCAATGCACCTATCAGGATCATGAAGAATCTTAGAATTTGTGGGGATTGTCATTCTTTTATGAAGATCGCATCAAGTTGTTTGGGGAGGGAAATCATTGTCAGGGATACTAAAAGGTTTCACCATTTCAAAAATGGTTTTTGCTCTTGTCAGGAATTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

679

Amino Acids

76.19

Weight (kDa)

8.3

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	170 - 217	1.4e-06	PPR repeat family
PPR	PF01535	172 - 200	7.2e-07	PPR repeat
PPR_2	PF13041	372 - 419	1.4e-06	PPR repeat family
E_motif	PF20431	489 - 551	1.8e-19	E motif
DYW_deaminase	PF14432	587 - 679	3.2e-37	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04780
fragaria_vesca	FvH4_7g02270
malus_domestica	MD05G1362900.v1.1 MD05G1363000.v1.1 MD10G1340500.v1.1
prunus_persica	Prupe.2G071000_v2.0.a1 Prupe.2G073400_v2.0.a1
pyrus_communis	pycom05g32940 pycom10g29030
rosa_chinensis	RchiOBHm_Chr1g0319571 RchiOBHm_Chr6g0267541 RchiOBHm_Chr7g0197341
rosa_laevigata	RLG00000030470
rosa_multiflora	Rmu_sc0001522.1_g000010 Rmu_sc0002539.1_g000062 Rmu_sc0031493.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284250 Rroxscaffold_4G00328280 Rroxscaffold_7G00200640
rosa_rugosa	Rorug01G0028300 Rorug01G0028400 Rorug01G0028500 Rorug01G0028600 Rorug06G0033600 Rorug06G0033600
rosa_samantha	Rh1AG040400 Rh1BG037600 Rh1CG041600 Rh1DG028300 Rh6AG155100 Rh6BG155700 Rh6CG150900 Rh6DG141000
rosa_wichuraiana	Rw0G012790 Rw1G003340 Rw6G013310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	973
Acc16I	TGCGCA	1 cut(s)	849
Acc36I	ACCTGC	3 cut(s)	944, 973, 1196
AccB1I	GGYRCC	1 cut(s)	1827
AccB7I	CCANNNNNTGG	1 cut(s)	1738
AccII	CGCG	1 cut(s)	59
AciI	CCGC	2 cut(s)	57, 459
AclWI	GGATC	3 cut(s)	1456, 1469, 1901
AcsI	RAATTY	9 cut(s)	28, 65, 122, 230, 617, 1327, 1471, 1911, 2030
AcvI	CACGTG	1 cut(s)	822
AdeI	CACNNNGTG	1 cut(s)	1318
AfaI	GTAC	1 cut(s)	585
AfiI	CCNNNNNNNGG	4 cut(s)	368, 552, 553, 1738
AflII	CTTAAG	1 cut(s)	172
AflIII	ACRYGT	2 cut(s)	444, 1050
AleI	CACNNNNGTG	1 cut(s)	1833
Alw21I	GWGCWC	2 cut(s)	361, 895
Alw26I	GTCTC	1 cut(s)	264
Alw44I	GTGCAC	1 cut(s)	357
AlwI	GGATC	3 cut(s)	1456, 1469, 1901
AoxI	GGCC	1 cut(s)	375
ApaLI	GTGCAC	1 cut(s)	357
ApeKI	GCWGC	6 cut(s)	149, 650, 962, 1198, 1493, 1562
ApoI	RAATTY	9 cut(s)	28, 65, 122, 230, 617, 1327, 1471, 1911, 2030
Asp700I	GAANNNNTTC	2 cut(s)	138, 1289
AspLEI	GCGC	3 cut(s)	61, 476, 850
AsuC2I	CCSGG	1 cut(s)	547
AsuHPI	GGTGA	3 cut(s)	134, 1186, 1988
BaeGI	GKGCMC	1 cut(s)	361
BamHI	GGATCC	1 cut(s)	1461
BanI	GGYRCC	1 cut(s)	1827
BanII	GRGCYC	2 cut(s)	861, 895
BbrPI	CACGTG	1 cut(s)	822
Bbv12I	GWGCWC	2 cut(s)	361, 895
BbvI	GCAGC	6 cut(s)	136, 637, 974, 1210, 1505, 1574
BciVI	GTATCC	1 cut(s)	1975
BcnI	CCSGG	1 cut(s)	547
BcoDI	GTCTC	1 cut(s)	264
BfaI	CTAG	5 cut(s)	477, 908, 1152, 1169, 1701
BfrI	CTTAAG	1 cut(s)	172
BfuAI	ACCTGC	3 cut(s)	944, 973, 1196
BfuI	GTATCC	1 cut(s)	1975
BisI	GCNGC	7 cut(s)	150, 460, 651, 963, 1199, 1494, 1563
BlpI	GCTNAGC	1 cut(s)	1497
BlsI	GCNGC	7 cut(s)	151, 461, 652, 964, 1200, 1495, 1564
Bme1390I	CCNGG	1 cut(s)	547
BmiI	GGNNCC	3 cut(s)	1463, 1535, 1829
BmrFI	CCNGG	1 cut(s)	547
BmsI	GCATC	5 cut(s)	334, 766, 789, 1408, 1955
BplI	GAGNNNNNCTC	2 cut(s)	1703, 1735
Bpu1102I	GCTNAGC	1 cut(s)	1497
BpuMI	CCSGG	1 cut(s)	547
BsaAI	YACGTR	2 cut(s)	587, 822
BsaBI	GATNNNNATC	2 cut(s)	409, 1652
BsaI	GGTCTC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	1465
Bsc4I	CCNNNNNNNGG	4 cut(s)	368, 552, 553, 1738
Bse1I	ACTGG	2 cut(s)	919, 1012
Bse3DI	GCAATG	5 cut(s)	16, 163, 253, 714, 737
Bse8I	GATNNNNATC	2 cut(s)	409, 1652
BseDI	CCNNGG	1 cut(s)	1465
BseGI	GGATG	3 cut(s)	781, 1696, 1758
BseJI	GATNNNNATC	2 cut(s)	409, 1652
BseLI	CCNNNNNNNGG	4 cut(s)	368, 552, 553, 1738
BseMI	GCAATG	5 cut(s)	16, 163, 253, 714, 737
BseMII	CTCAG	9 cut(s)	227, 249, 586, 660, 1476, 1500, 1701, 1761, 1814
BseNI	ACTGG	2 cut(s)	919, 1012
BseRI	GAGGAG	2 cut(s)	823, 1595
BseSI	GKGCMC	1 cut(s)	361
BseXI	GCAGC	6 cut(s)	136, 637, 974, 1210, 1505, 1574
BseYI	CCCAGC	2 cut(s)	5, 839
BsgI	GTGCAG	1 cut(s)	972
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	1 cut(s)	377
BshNI	GGYRCC	1 cut(s)	1827
BsiHKAI	GWGCWC	2 cut(s)	361, 895
BsiSI	CCGG	1 cut(s)	547
BsiWI	CGTACG	1 cut(s)	583
BslFI	GGGAC	2 cut(s)	745, 1306
BslI	CCNNNNNNNGG	4 cut(s)	368, 552, 553, 1738
BsmAI	GTCTC	1 cut(s)	264
BsmFI	GGGAC	2 cut(s)	745, 1306
BsmI	GAATGC	2 cut(s)	284, 1135
BsnI	GGCC	1 cut(s)	377
Bso31I	GGTCTC	1 cut(s)	264
Bsp1286I	GDGCHC	3 cut(s)	361, 861, 895
Bsp143I	GATC	5 cut(s)	1179, 1461, 1783, 1893, 1941
Bsp1720I	GCTNAGC	1 cut(s)	1497
Bsp19I	CCATGG	1 cut(s)	1465
BspACI	CCGC	2 cut(s)	57, 459
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	9 cut(s)	226, 248, 585, 661, 1477, 1501, 1702, 1762, 1815
BspFNI	CGCG	1 cut(s)	59
BspHI	TCATGA	2 cut(s)	1299, 1896
BspLI	GGNNCC	3 cut(s)	1463, 1535, 1829
BspMI	ACCTGC	3 cut(s)	944, 973, 1196
BspPI	GGATC	3 cut(s)	1456, 1469, 1901
BspT107I	GGYRCC	1 cut(s)	1827
BspTI	CTTAAG	1 cut(s)	172
BspTNI	GGTCTC	1 cut(s)	264
BsrDI	GCAATG	5 cut(s)	16, 163, 253, 714, 737
BsrI	ACTGG	2 cut(s)	919, 1012
BssECI	CCNNGG	1 cut(s)	1465
BssMI	GATC	5 cut(s)	1179, 1461, 1783, 1893, 1941
BssT1I	CCWWGG	1 cut(s)	1465
Bst4CI	ACNGT	4 cut(s)	203, 625, 1090, 1446
Bst6I	CTCTTC	4 cut(s)	861, 937, 1634, 1794
BstAFI	CTTAAG	1 cut(s)	172
BstBAI	YACGTR	2 cut(s)	587, 822
BstC8I	GCNNGC	6 cut(s)	154, 379, 990, 1162, 1203, 1345
BstDSI	CCRYGG	1 cut(s)	1465
BstENI	CCTNNNNNAGG	1 cut(s)	366
BstF5I	GGATG	3 cut(s)	781, 1696, 1758
BstFNI	CGCG	1 cut(s)	59
BstHHI	GCGC	3 cut(s)	61, 476, 850
BstKTI	GATC	5 cut(s)	1182, 1464, 1786, 1896, 1944
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	5 cut(s)	1179, 1461, 1783, 1893, 1941
BstMWI	GCNNNNNNNGC	8 cut(s)	383, 650, 659, 845, 856, 944, 959, 1490
BstNSI	RCATGY	5 cut(s)	436, 992, 1054, 1160, 1347
BstSCI	CCNGG	1 cut(s)	545
BstSLI	GKGCMC	1 cut(s)	361
BstSNI	TACGTA	1 cut(s)	587
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	6 cut(s)	136, 637, 974, 1210, 1505, 1574
BstX2I	RGATCY	1 cut(s)	1461
BstYI	RGATCY	1 cut(s)	1461
BsuI	GTATCC	1 cut(s)	1975
BsuRI	GGCC	1 cut(s)	377
BtgI	CCRYGG	1 cut(s)	1465
BtsCI	GGATG	3 cut(s)	781, 1696, 1758
BtsI	GCAGTG	1 cut(s)	349
BtsIMutI	CAGTG	4 cut(s)	349, 580, 621, 1442
BveI	ACCTGC	3 cut(s)	944, 973, 1196
Cac8I	GCNNGC	6 cut(s)	154, 379, 990, 1162, 1203, 1345
CciI	TCATGA	2 cut(s)	1299, 1896
CfoI	GCGC	3 cut(s)	61, 476, 850
Csp6I	GTAC	1 cut(s)	584
CviQI	GTAC	1 cut(s)	584
DpnI	GATC	5 cut(s)	1181, 1463, 1785, 1895, 1943
DpnII	GATC	5 cut(s)	1179, 1461, 1783, 1893, 1941
DraI	TTTAAA	2 cut(s)	1003, 1020
DraIII	CACNNNGTG	1 cut(s)	1318
Eam1104I	CTCTTC	4 cut(s)	861, 937, 1634, 1794
EarI	CTCTTC	4 cut(s)	861, 937, 1634, 1794
Ecl136II	GAGCTC	1 cut(s)	893
Eco105I	TACGTA	1 cut(s)	587
Eco130I	CCWWGG	1 cut(s)	1465
Eco147I	AGGCCT	1 cut(s)	377
Eco24I	GRGCYC	2 cut(s)	861, 895
Eco31I	GGTCTC	1 cut(s)	264
Eco53kI	GAGCTC	1 cut(s)	893
Eco72I	CACGTG	1 cut(s)	822
EcoICRI	GAGCTC	1 cut(s)	893
EcoNI	CCTNNNNNAGG	1 cut(s)	366
EcoRI	GAATTC	1 cut(s)	617
EcoT14I	CCWWGG	1 cut(s)	1465
EcoT22I	ATGCAT	2 cut(s)	1345, 1349
EcoT38I	GRGCYC	2 cut(s)	861, 895
ErhI	CCWWGG	1 cut(s)	1465
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FaqI	GGGAC	2 cut(s)	745, 1306
FauI	CCCGC	1 cut(s)	64
FauNDI	CATATG	1 cut(s)	1260
Fnu4HI	GCNGC	7 cut(s)	150, 460, 651, 963, 1199, 1494, 1563
FokI	GGATG	3 cut(s)	788, 1683, 1765
FriOI	GRGCYC	2 cut(s)	861, 895
Fsp4HI	GCNGC	7 cut(s)	150, 460, 651, 963, 1199, 1494, 1563
FspBI	CTAG	5 cut(s)	477, 908, 1152, 1169, 1701
FspI	TGCGCA	1 cut(s)	849
GlaI	GCGC	3 cut(s)	60, 475, 849
GluI	GCNGC	7 cut(s)	150, 460, 651, 963, 1199, 1494, 1563
GsaI	CCCAGC	2 cut(s)	9, 843
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	1 cut(s)	547
HhaI	GCGC	3 cut(s)	61, 476, 850
Hin6I	GCGC	3 cut(s)	59, 474, 848
HinP1I	GCGC	3 cut(s)	59, 474, 848
HindIII	AAGCTT	2 cut(s)	92, 1601
HinfI	GANTC	4 cut(s)	139, 794, 1378, 1903
HpaII	CCGG	1 cut(s)	547
HphI	GGTGA	3 cut(s)	134, 1186, 1988
Hpy166II	GTNNAC	7 cut(s)	77, 359, 677, 924, 1336, 1442, 1669
Hpy188I	TCNGA	7 cut(s)	216, 415, 670, 1044, 1510, 1685, 1824
Hpy188III	TCNNGA	7 cut(s)	334, 1152, 1300, 1382, 1891, 1897, 2027
Hpy8I	GTNNAC	7 cut(s)	77, 359, 677, 924, 1336, 1442, 1669
HpyAV	CCTTC	5 cut(s)	182, 362, 968, 1275, 1621
HpyCH4III	ACNGT	4 cut(s)	203, 625, 1090, 1446
HpyCH4IV	ACGT	5 cut(s)	425, 444, 586, 747, 821
HpyF10VI	GCNNNNNNNGC	8 cut(s)	383, 650, 659, 845, 856, 944, 959, 1490
HpySE526I	ACGT	5 cut(s)	425, 444, 586, 747, 821
HspAI	GCGC	3 cut(s)	59, 474, 848
Kzo9I	GATC	5 cut(s)	1179, 1461, 1783, 1893, 1941
LmnI	GCTCC	5 cut(s)	39, 507, 888, 1169, 1218
Lsp1109I	GCAGC	6 cut(s)	136, 637, 974, 1210, 1505, 1574
LweI	GCATC	5 cut(s)	334, 766, 789, 1408, 1955
MaeI	CTAG	5 cut(s)	477, 908, 1152, 1169, 1701
MaeII	ACGT	5 cut(s)	425, 444, 586, 747, 821
MaeIII	GTNAC	3 cut(s)	537, 817, 1760
MalI	GATC	5 cut(s)	1181, 1463, 1785, 1895, 1943
MboI	GATC	5 cut(s)	1179, 1461, 1783, 1893, 1941
MboII	GAAGA	9 cut(s)	611, 878, 924, 1636, 1651, 1778, 1811, 1912, 1951
MfeI	CAATTG	2 cut(s)	99, 1733
MflI	RGATCY	1 cut(s)	1461
MhlI	GDGCHC	3 cut(s)	361, 861, 895
MlyI	GAGTC	1 cut(s)	803
MmeI	TCCRAC	3 cut(s)	382, 1625, 1663
Mph1103I	ATGCAT	2 cut(s)	1345, 1349
MroXI	GAANNNNTTC	2 cut(s)	138, 1289
MslI	CAYNNNNRTG	1 cut(s)	1833
MspCI	CTTAAG	1 cut(s)	172
MspI	CCGG	1 cut(s)	547
MspR9I	CCNGG	1 cut(s)	547
MunI	CAATTG	2 cut(s)	99, 1733
Mva1269I	GAATGC	2 cut(s)	284, 1135
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	8 cut(s)	383, 650, 659, 845, 856, 944, 959, 1490
NciI	CCSGG	1 cut(s)	547
NcoI	CCATGG	1 cut(s)	1465
NdeI	CATATG	1 cut(s)	1260
NdeII	GATC	5 cut(s)	1179, 1461, 1783, 1893, 1941
NlaIV	GGNNCC	3 cut(s)	1463, 1535, 1829
NmuCI	GTSAC	2 cut(s)	537, 817
NsbI	TGCGCA	1 cut(s)	849
NsiI	ATGCAT	2 cut(s)	1345, 1349
NspI	RCATGY	5 cut(s)	436, 992, 1054, 1160, 1347
OliI	CACNNNNGTG	1 cut(s)	1833
PaeI	GCATGC	2 cut(s)	992, 1347
PagI	TCATGA	2 cut(s)	1299, 1896
PaqCI	CACCTGC	1 cut(s)	973
PceI	AGGCCT	1 cut(s)	377
PciI	ACATGT	1 cut(s)	1050
PctI	GAATGC	2 cut(s)	284, 1135
PdmI	GAANNNNTTC	2 cut(s)	138, 1289
PfeI	GAWTC	3 cut(s)	139, 1378, 1903
Pfl23II	CGTACG	1 cut(s)	583
PflMI	CCANNNNNTGG	1 cut(s)	1738
PkrI	GCNGC	7 cut(s)	151, 461, 652, 964, 1200, 1495, 1564
PleI	GAGTC	1 cut(s)	802
PmaCI	CACGTG	1 cut(s)	822
PmlI	CACGTG	1 cut(s)	822
PpsI	GAGTC	1 cut(s)	802
Ppu21I	YACGTR	2 cut(s)	587, 822
PscI	ACATGT	1 cut(s)	1050
Psp124BI	GAGCTC	1 cut(s)	895
PspCI	CACGTG	1 cut(s)	822
PspFI	CCCAGC	2 cut(s)	5, 839
PspLI	CGTACG	1 cut(s)	583
PspN4I	GGNNCC	3 cut(s)	1463, 1535, 1829
PsuI	RGATCY	1 cut(s)	1461
RsaI	GTAC	1 cut(s)	585
RsaNI	GTAC	1 cut(s)	584
RseI	CAYNNNNRTG	1 cut(s)	1833
SacI	GAGCTC	1 cut(s)	895
SatI	GCNGC	7 cut(s)	150, 460, 651, 963, 1199, 1494, 1563
Sau3AI	GATC	5 cut(s)	1179, 1461, 1783, 1893, 1941
SchI	GAGTC	1 cut(s)	803
ScrFI	CCNGG	1 cut(s)	547
SduI	GDGCHC	3 cut(s)	361, 861, 895
SfaNI	GCATC	5 cut(s)	334, 766, 789, 1408, 1955
SmiMI	CAYNNNNRTG	1 cut(s)	1833
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
SnaBI	TACGTA	1 cut(s)	587
SphI	GCATGC	2 cut(s)	992, 1347
SseBI	AGGCCT	1 cut(s)	377
SsiI	CCGC	2 cut(s)	57, 459
SspI	AATATT	2 cut(s)	1289, 1555
SspMI	CTAG	5 cut(s)	477, 908, 1152, 1169, 1701
SstI	GAGCTC	1 cut(s)	895
StuI	AGGCCT	1 cut(s)	377
StyD4I	CCNGG	1 cut(s)	545
StyI	CCWWGG	1 cut(s)	1465
TaaI	ACNGT	4 cut(s)	203, 625, 1090, 1446
TaiI	ACGT	5 cut(s)	428, 447, 589, 750, 824
TaqI	TCGA	2 cut(s)	797, 1797
TaqII	GACCGA	1 cut(s)	1356
TauI	GCSGC	1 cut(s)	462
TfiI	GAWTC	3 cut(s)	139, 1378, 1903
TscAI	CASTG	4 cut(s)	349, 580, 628, 1449
TseFI	GTSAC	2 cut(s)	537, 817
TseI	GCWGC	6 cut(s)	149, 650, 962, 1198, 1493, 1562
Tsp45I	GTSAC	2 cut(s)	537, 817
TspDTI	ATGAA	9 cut(s)	507, 507, 674, 879, 1466, 1778, 1830, 1913, 1952
TspRI	CASTG	4 cut(s)	349, 580, 628, 1449
Van91I	CCANNNNNTGG	1 cut(s)	1738
Vha464I	CTTAAG	1 cut(s)	172
VneI	GTGCAC	1 cut(s)	357
XagI	CCTNNNNNAGG	1 cut(s)	366
XapI	RAATTY	9 cut(s)	28, 65, 122, 230, 617, 1327, 1471, 1911, 2030
XbaI	TCTAGA	1 cut(s)	1151
XceI	RCATGY	5 cut(s)	436, 992, 1054, 1160, 1347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2006
XmnI	GAANNNNTTC	2 cut(s)	138, 1289
XspI	CTAG	5 cut(s)	477, 908, 1152, 1169, 1701
Zsp2I	ATGCAT	2 cut(s)	1345, 1349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.