Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003353

Physical Location & Seq

Genomic Coordinates Forward (+)

5042075 .. 5049333

Gene Structure 7259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG037600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1878 bp

ATGAGAACCTTAAGGAGATACAAGGAAGGATTGTTTAACAGTAGCACAGCTCAGATATATTGTAGAAAATTCTCAGCCATTGGCAATGCTGAAGCTGATAGACCCAGAGACCAAGAATGCCTTGTTTGGTTGGGCACAAGTGCCACTCATCTATCGCTTTTGCATCAAATCTTGCAAAGCAGTGCAAGAACAGGTGCACCTATGGAAGGAAAGGCCTGCCATGCACAGAGTATTCGTGTTGGATTACAATCGGACACTTTAACGTCTAACATGCTTATAAACATGTATTCAAAATGTGGCTTACATAATTGCGCTAGAAAAGTATTTGATGAAATGCCTGAAAAGAGCTTAGTTTCATGGAATACTATGATTGGGTCACTTGCCCGGAATGGGGAGGAACAAGAAGCTCTTAGTGTTTTCGTACGTATGCAAAGAGAAGAAAACCAATTTAGTGAATTCACTGTTTCAAGTGTTCTTTTCGCTTGTGCTGCGAAATGTGCTGTGTCTGAGTGTAAACAGCTTCATGCTTTTGCTATTAAGGTAGCAATGGTTTTGAATGTCTATGTGGGGACTGCATTGCTTGACGTTTATTCAAAGGCTGGATTGATAAAGGACGCAAGTTTTGTTTTTGAGTCCATGCCAGAGAGGAGTGATGTCACGTGGAGTTCAATGGTTGCTGGGTATGTGCAAAATGGGCTCTATGAGGAGGCTTTGGTGTTGCTTCACAGAGCTCAAATGATAGGACTAGAACATAACCAGTTTACAATCTCTTCTGCTATTTGTGCTTGTGCAGGTCTGGCAGCTTTGATAGAAGGGAAGCAGGTGCATGCCTTGTTGTTTAAAACTGGATTTGGTTTAAATATCTATATCGTTTCCTCTCTGATAGACATGTATTCAAAATGTGGTAGCATTGGAGAAGCATACACCGTGTTTCAAGGTATGGAGGACAGGAACACTATTTTGTGGAATGCCATGATTTCTGGGTTTTCTAGACATGCTTGCTCCCTAGAGGTGATGATCTTATTTGAGAAAATGCAGCAGGCAGGTATGCTCCCAAGTGAAGTAGCGTATATATCTGTATTAACTGCTTGTAGTCATATGGGATTGGTTGAAAGTGGAAGGAAATATTTCAACCTCATGATAACAGAACACAATGTGTCCCCAAATGTTGTTCACTATGCATGCATGGTTGATATTTTTGGTCGGTCAGGGTTGATTCTTGAAGCCCATAATTTGATTGAGAATATGCCATTTGATGCTACTGCTTCTATGTGGGGTTCACTGTTAGCTTCTTGTAGGATCCATGGAAATTTTCATTTAGCTGAGATAGCAGCTAAGCATTTGTCTGAGATAGAACCGAACAATGCAGGGAACCTCATTTTGTTGTCAAATATTTATGCAGCAAATAATAAGTGGGAGGAGGTTGCAAGAACAAGGAAGCTTCTTAAAGAAAGTGAGTTGAAGAAGGAAAGAGGGAAGAGTTGGATTGAAATCAAGGACAAAGTTCACTCATTTATGGTCGGAGAGAGGAAACATCCTAGAATTGCTGAGATATACTCTAAGTTAGACCAATTGGTGGAAAAATTAAGGATGATGGGTTACAAGGCTGAGATTGAACATGATCTTCATTATGTCGAAGAGAGCAGAAAACATGAACTTCTGAGGCACCATAGTGAAAAACTTGCTCTTACTTTTGGGTTGATGTGCTTACCCTCCAATGCTCCTATCAGGATCATGAAGAATCTTAGAATTTGTGGGGATTGTCATTCTTTTATGAAGATCGCATCAAGTTGTTTGGGGAGGGAAATCATTGTCAGGGATACTAAAAGGTTTCACCATTTCAAAAATGGTTTTTGCTCTTGTCGGGAATTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

625

Amino Acids

70.31

Weight (kDa)

8.14

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	116 - 163	1.3e-06	PPR repeat family
PPR	PF01535	118 - 146	6.5e-07	PPR repeat
PPR_2	PF13041	318 - 365	1.2e-06	PPR repeat family
E_motif	PF20431	435 - 497	1.6e-19	E motif
DYW_deaminase	PF14432	533 - 625	3.6e-37	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04780
fragaria_vesca	FvH4_7g02270
malus_domestica	MD05G1362900.v1.1 MD05G1363000.v1.1 MD10G1340500.v1.1
prunus_persica	Prupe.2G071000_v2.0.a1 Prupe.2G073400_v2.0.a1
pyrus_communis	pycom05g32940 pycom10g29030
rosa_chinensis	RchiOBHm_Chr1g0319571 RchiOBHm_Chr6g0267541 RchiOBHm_Chr7g0197341
rosa_laevigata	RLG00000030470
rosa_multiflora	Rmu_sc0001522.1_g000010 Rmu_sc0002539.1_g000062 Rmu_sc0031493.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284250 Rroxscaffold_4G00328280 Rroxscaffold_7G00200640
rosa_rugosa	Rorug01G0028300 Rorug01G0028400 Rorug01G0028500 Rorug01G0028600 Rorug06G0033600 Rorug06G0033600
rosa_samantha	Rh1AG040400 Rh1BG037600 Rh1CG041600 Rh1DG028300 Rh6AG155100 Rh6BG155700 Rh6CG150900 Rh6DG141000
rosa_wichuraiana	Rw0G012790 Rw1G003340 Rw6G013310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	278
AarI	CACCTGC	1 cut(s)	811
Acc36I	ACCTGC	3 cut(s)	782, 811, 1034
AccB1I	GGYRCC	1 cut(s)	1665
AccB7I	CCANNNNNTGG	1 cut(s)	1576
AclWI	GGATC	3 cut(s)	1294, 1307, 1739
AcsI	RAATTY	5 cut(s)	68, 455, 1309, 1749, 1868
AcuI	CTGAAG	1 cut(s)	111
AcvI	CACGTG	1 cut(s)	660
AdeI	CACNNNGTG	1 cut(s)	1156
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	4 cut(s)	206, 390, 391, 1576
AflII	CTTAAG	1 cut(s)	10
AflIII	ACRYGT	2 cut(s)	282, 888
AleI	CACNNNNGTG	1 cut(s)	1671
Alw21I	GWGCWC	2 cut(s)	199, 733
Alw26I	GTCTC	1 cut(s)	102
Alw44I	GTGCAC	1 cut(s)	195
AlwI	GGATC	3 cut(s)	1294, 1307, 1739
AoxI	GGCC	1 cut(s)	213
ApaLI	GTGCAC	1 cut(s)	195
ApeKI	GCWGC	5 cut(s)	488, 800, 1036, 1331, 1400
ApoI	RAATTY	5 cut(s)	68, 455, 1309, 1749, 1868
ArsI	GACNNNNNNTTYG	2 cut(s)	605, 637
Asp700I	GAANNNNTTC	1 cut(s)	1127
AspLEI	GCGC	1 cut(s)	314
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	2 cut(s)	1024, 1826
BaeGI	GKGCMC	2 cut(s)	137, 199
BamHI	GGATCC	1 cut(s)	1299
BanI	GGYRCC	1 cut(s)	1665
BanII	GRGCYC	2 cut(s)	699, 733
BbrPI	CACGTG	1 cut(s)	660
Bbv12I	GWGCWC	2 cut(s)	199, 733
BbvI	GCAGC	5 cut(s)	475, 812, 1048, 1343, 1412
BccI	CCATC	1 cut(s)	1588
BciVI	GTATCC	1 cut(s)	1813
BcnI	CCSGG	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	5 cut(s)	315, 746, 990, 1007, 1539
BfrI	CTTAAG	1 cut(s)	10
BfuAI	ACCTGC	3 cut(s)	782, 811, 1034
BfuI	GTATCC	1 cut(s)	1813
BisI	GCNGC	5 cut(s)	489, 801, 1037, 1332, 1401
BlpI	GCTNAGC	1 cut(s)	1335
BlsI	GCNGC	5 cut(s)	490, 802, 1038, 1333, 1402
Bme1390I	CCNGG	1 cut(s)	385
BmiI	GGNNCC	3 cut(s)	1301, 1373, 1667
BmrFI	CCNGG	1 cut(s)	385
BmsI	GCATC	3 cut(s)	172, 1246, 1793
BplI	GAGNNNNNCTC	2 cut(s)	1541, 1573
Bpu1102I	GCTNAGC	1 cut(s)	1335
BpuMI	CCSGG	1 cut(s)	385
BsaAI	YACGTR	2 cut(s)	425, 660
BsaBI	GATNNNNATC	2 cut(s)	247, 1490
BsaI	GGTCTC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	1303
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 390, 391, 1576
Bse1I	ACTGG	2 cut(s)	757, 850
Bse3DI	GCAATG	3 cut(s)	91, 552, 575
Bse8I	GATNNNNATC	2 cut(s)	247, 1490
BseDI	CCNNGG	1 cut(s)	1303
BseGI	GGATG	2 cut(s)	1534, 1596
BseJI	GATNNNNATC	2 cut(s)	247, 1490
BseLI	CCNNNNNNNGG	4 cut(s)	206, 390, 391, 1576
BseMI	GCAATG	3 cut(s)	91, 552, 575
BseMII	CTCAG	8 cut(s)	65, 87, 498, 1314, 1338, 1539, 1599, 1652
BseNI	ACTGG	2 cut(s)	757, 850
BseRI	GAGGAG	3 cut(s)	661, 719, 1433
BseSI	GKGCMC	2 cut(s)	137, 199
BseXI	GCAGC	5 cut(s)	475, 812, 1048, 1343, 1412
BseYI	CCCAGC	1 cut(s)	677
BsgI	GTGCAG	1 cut(s)	810
BshFI	GGCC	1 cut(s)	215
BshNI	GGYRCC	1 cut(s)	1665
BsiHKAI	GWGCWC	2 cut(s)	199, 733
BsiSI	CCGG	1 cut(s)	385
BsiWI	CGTACG	1 cut(s)	421
BslFI	GGGAC	2 cut(s)	583, 1144
BslI	CCNNNNNNNGG	4 cut(s)	206, 390, 391, 1576
BsmAI	GTCTC	1 cut(s)	102
BsmFI	GGGAC	2 cut(s)	583, 1144
BsmI	GAATGC	2 cut(s)	122, 973
BsnI	GGCC	1 cut(s)	215
Bso31I	GGTCTC	1 cut(s)	102
Bsp1286I	GDGCHC	4 cut(s)	137, 199, 699, 733
Bsp143I	GATC	5 cut(s)	1017, 1299, 1621, 1731, 1779
Bsp1720I	GCTNAGC	1 cut(s)	1335
Bsp19I	CCATGG	1 cut(s)	1303
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	8 cut(s)	64, 86, 499, 1315, 1339, 1540, 1600, 1653
BspHI	TCATGA	2 cut(s)	1137, 1734
BspLI	GGNNCC	3 cut(s)	1301, 1373, 1667
BspMI	ACCTGC	3 cut(s)	782, 811, 1034
BspPI	GGATC	3 cut(s)	1294, 1307, 1739
BspT107I	GGYRCC	1 cut(s)	1665
BspTI	CTTAAG	1 cut(s)	10
BspTNI	GGTCTC	1 cut(s)	102
BsrDI	GCAATG	3 cut(s)	91, 552, 575
BsrI	ACTGG	2 cut(s)	757, 850
BssECI	CCNNGG	1 cut(s)	1303
BssMI	GATC	5 cut(s)	1017, 1299, 1621, 1731, 1779
BssT1I	CCWWGG	1 cut(s)	1303
Bst4CI	ACNGT	4 cut(s)	41, 463, 928, 1284
Bst6I	CTCTTC	3 cut(s)	775, 1472, 1632
BstAFI	CTTAAG	1 cut(s)	10
BstBAI	YACGTR	2 cut(s)	425, 660
BstC8I	GCNNGC	5 cut(s)	217, 828, 1000, 1041, 1183
BstDSI	CCRYGG	1 cut(s)	1303
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	1534, 1596
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	5 cut(s)	1020, 1302, 1624, 1734, 1782
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	5 cut(s)	1017, 1299, 1621, 1731, 1779
BstMWI	GCNNNNNNNGC	7 cut(s)	221, 488, 497, 694, 782, 797, 1328
BstNSI	RCATGY	6 cut(s)	274, 286, 830, 892, 998, 1185
BstSCI	CCNGG	1 cut(s)	383
BstSLI	GKGCMC	2 cut(s)	137, 199
BstSNI	TACGTA	1 cut(s)	425
BstV1I	GCAGC	5 cut(s)	475, 812, 1048, 1343, 1412
BstX2I	RGATCY	1 cut(s)	1299
BstYI	RGATCY	1 cut(s)	1299
BsuI	GTATCC	1 cut(s)	1813
BsuRI	GGCC	1 cut(s)	215
BtgI	CCRYGG	1 cut(s)	1303
BtsCI	GGATG	2 cut(s)	1534, 1596
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	3 cut(s)	187, 459, 1280
BveI	ACCTGC	3 cut(s)	782, 811, 1034
Cac8I	GCNNGC	5 cut(s)	217, 828, 1000, 1041, 1183
CciI	TCATGA	2 cut(s)	1137, 1734
CfoI	GCGC	1 cut(s)	314
CseI	GACGC	1 cut(s)	623
Csp6I	GTAC	1 cut(s)	422
CviQI	GTAC	1 cut(s)	422
DpnI	GATC	5 cut(s)	1019, 1301, 1623, 1733, 1781
DpnII	GATC	5 cut(s)	1017, 1299, 1621, 1731, 1779
DraI	TTTAAA	2 cut(s)	841, 858
DraIII	CACNNNGTG	1 cut(s)	1156
Eam1104I	CTCTTC	3 cut(s)	775, 1472, 1632
EarI	CTCTTC	3 cut(s)	775, 1472, 1632
Ecl136II	GAGCTC	1 cut(s)	731
Eco105I	TACGTA	1 cut(s)	425
Eco130I	CCWWGG	1 cut(s)	1303
Eco147I	AGGCCT	1 cut(s)	215
Eco24I	GRGCYC	2 cut(s)	699, 733
Eco31I	GGTCTC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	731
Eco57I	CTGAAG	1 cut(s)	111
Eco72I	CACGTG	1 cut(s)	660
EcoICRI	GAGCTC	1 cut(s)	731
EcoNI	CCTNNNNNAGG	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	455
EcoT14I	CCWWGG	1 cut(s)	1303
EcoT22I	ATGCAT	2 cut(s)	1183, 1187
EcoT38I	GRGCYC	2 cut(s)	699, 733
ErhI	CCWWGG	1 cut(s)	1303
FalI	AAGNNNNNCTT	4 cut(s)	105, 137, 393, 425
FaqI	GGGAC	2 cut(s)	583, 1144
FauNDI	CATATG	1 cut(s)	1098
Fnu4HI	GCNGC	5 cut(s)	489, 801, 1037, 1332, 1401
FokI	GGATG	2 cut(s)	1521, 1603
FriOI	GRGCYC	2 cut(s)	699, 733
Fsp4HI	GCNGC	5 cut(s)	489, 801, 1037, 1332, 1401
FspBI	CTAG	5 cut(s)	315, 746, 990, 1007, 1539
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	5 cut(s)	489, 801, 1037, 1332, 1401
GsaI	CCCAGC	1 cut(s)	681
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	1 cut(s)	385
HgaI	GACGC	1 cut(s)	623
HhaI	GCGC	1 cut(s)	314
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HindIII	AAGCTT	1 cut(s)	1439
HinfI	GANTC	3 cut(s)	632, 1216, 1741
HpaII	CCGG	1 cut(s)	385
HphI	GGTGA	2 cut(s)	1024, 1826
Hpy166II	GTNNAC	6 cut(s)	197, 515, 762, 1174, 1280, 1507
Hpy188I	TCNGA	7 cut(s)	54, 253, 508, 882, 1348, 1523, 1662
Hpy188III	TCNNGA	6 cut(s)	990, 1138, 1220, 1729, 1735, 1865
Hpy8I	GTNNAC	6 cut(s)	197, 515, 762, 1174, 1280, 1507
HpyAV	CCTTC	5 cut(s)	20, 200, 806, 1113, 1459
HpyCH4III	ACNGT	4 cut(s)	41, 463, 928, 1284
HpyCH4IV	ACGT	4 cut(s)	263, 424, 585, 659
HpyF10VI	GCNNNNNNNGC	7 cut(s)	221, 488, 497, 694, 782, 797, 1328
HpySE526I	ACGT	4 cut(s)	263, 424, 585, 659
HspAI	GCGC	1 cut(s)	312
Kzo9I	GATC	5 cut(s)	1017, 1299, 1621, 1731, 1779
LmnI	GCTCC	3 cut(s)	1007, 1056, 1726
Lsp1109I	GCAGC	5 cut(s)	475, 812, 1048, 1343, 1412
LweI	GCATC	3 cut(s)	172, 1246, 1793
MaeI	CTAG	5 cut(s)	315, 746, 990, 1007, 1539
MaeII	ACGT	4 cut(s)	263, 424, 585, 659
MaeIII	GTNAC	3 cut(s)	375, 655, 1598
MalI	GATC	5 cut(s)	1019, 1301, 1623, 1733, 1781
MboI	GATC	5 cut(s)	1017, 1299, 1621, 1731, 1779
MboII	GAAGA	8 cut(s)	449, 762, 1474, 1489, 1616, 1649, 1750, 1789
MfeI	CAATTG	1 cut(s)	1571
MflI	RGATCY	1 cut(s)	1299
MhlI	GDGCHC	4 cut(s)	137, 199, 699, 733
MlyI	GAGTC	1 cut(s)	641
MmeI	TCCRAC	3 cut(s)	220, 1463, 1501
Mph1103I	ATGCAT	2 cut(s)	1183, 1187
MroXI	GAANNNNTTC	1 cut(s)	1127
MseI	TTAA	9 cut(s)	11, 36, 260, 537, 840, 857, 1082, 1446, 1586
MslI	CAYNNNNRTG	1 cut(s)	1671
MspCI	CTTAAG	1 cut(s)	10
MspI	CCGG	1 cut(s)	385
MspR9I	CCNGG	1 cut(s)	385
MunI	CAATTG	1 cut(s)	1571
Mva1269I	GAATGC	2 cut(s)	122, 973
MwoI	GCNNNNNNNGC	7 cut(s)	221, 488, 497, 694, 782, 797, 1328
NciI	CCSGG	1 cut(s)	385
NcoI	CCATGG	1 cut(s)	1303
NdeI	CATATG	1 cut(s)	1098
NdeII	GATC	5 cut(s)	1017, 1299, 1621, 1731, 1779
NlaIV	GGNNCC	3 cut(s)	1301, 1373, 1667
NmuCI	GTSAC	2 cut(s)	375, 655
NsiI	ATGCAT	2 cut(s)	1183, 1187
NspI	RCATGY	6 cut(s)	274, 286, 830, 892, 998, 1185
OliI	CACNNNNGTG	1 cut(s)	1671
PaeI	GCATGC	2 cut(s)	830, 1185
PagI	TCATGA	2 cut(s)	1137, 1734
PaqCI	CACCTGC	1 cut(s)	811
PceI	AGGCCT	1 cut(s)	215
PciI	ACATGT	2 cut(s)	282, 888
PctI	GAATGC	2 cut(s)	122, 973
PdmI	GAANNNNTTC	1 cut(s)	1127
PfeI	GAWTC	2 cut(s)	1216, 1741
Pfl23II	CGTACG	1 cut(s)	421
PflMI	CCANNNNNTGG	1 cut(s)	1576
PkrI	GCNGC	5 cut(s)	490, 802, 1038, 1333, 1402
PleI	GAGTC	1 cut(s)	640
PmaCI	CACGTG	1 cut(s)	660
PmlI	CACGTG	1 cut(s)	660
PpsI	GAGTC	1 cut(s)	640
Ppu21I	YACGTR	2 cut(s)	425, 660
PscI	ACATGT	2 cut(s)	282, 888
PsiI	TTATAA	1 cut(s)	278
Psp124BI	GAGCTC	1 cut(s)	733
PspCI	CACGTG	1 cut(s)	660
PspFI	CCCAGC	1 cut(s)	677
PspLI	CGTACG	1 cut(s)	421
PspN4I	GGNNCC	3 cut(s)	1301, 1373, 1667
PsuI	RGATCY	1 cut(s)	1299
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
RseI	CAYNNNNRTG	1 cut(s)	1671
SacI	GAGCTC	1 cut(s)	733
SaqAI	TTAA	9 cut(s)	11, 36, 260, 537, 840, 857, 1082, 1446, 1586
SatI	GCNGC	5 cut(s)	489, 801, 1037, 1332, 1401
Sau3AI	GATC	5 cut(s)	1017, 1299, 1621, 1731, 1779
SchI	GAGTC	1 cut(s)	641
ScrFI	CCNGG	1 cut(s)	385
SduI	GDGCHC	4 cut(s)	137, 199, 699, 733
SfaNI	GCATC	3 cut(s)	172, 1246, 1793
SmiMI	CAYNNNNRTG	1 cut(s)	1671
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SnaBI	TACGTA	1 cut(s)	425
SphI	GCATGC	2 cut(s)	830, 1185
SseBI	AGGCCT	1 cut(s)	215
SspI	AATATT	2 cut(s)	1127, 1393
SspMI	CTAG	5 cut(s)	315, 746, 990, 1007, 1539
SstI	GAGCTC	1 cut(s)	733
StuI	AGGCCT	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	383
StyI	CCWWGG	1 cut(s)	1303
TaaI	ACNGT	4 cut(s)	41, 463, 928, 1284
TaiI	ACGT	4 cut(s)	266, 427, 588, 662
TaqI	TCGA	1 cut(s)	1635
TaqII	GACCGA	1 cut(s)	1194
TfiI	GAWTC	2 cut(s)	1216, 1741
Tru1I	TTAA	9 cut(s)	11, 36, 260, 537, 840, 857, 1082, 1446, 1586
Tru9I	TTAA	9 cut(s)	11, 36, 260, 537, 840, 857, 1082, 1446, 1586
TscAI	CASTG	3 cut(s)	187, 466, 1287
TseFI	GTSAC	2 cut(s)	375, 655
TseI	GCWGC	5 cut(s)	488, 800, 1036, 1331, 1400
Tsp45I	GTSAC	2 cut(s)	375, 655
TspDTI	ATGAA	8 cut(s)	345, 345, 512, 1304, 1616, 1668, 1751, 1790
TspRI	CASTG	3 cut(s)	187, 466, 1287
Van91I	CCANNNNNTGG	1 cut(s)	1576
Vha464I	CTTAAG	1 cut(s)	10
VneI	GTGCAC	1 cut(s)	195
XagI	CCTNNNNNAGG	1 cut(s)	204
XapI	RAATTY	5 cut(s)	68, 455, 1309, 1749, 1868
XbaI	TCTAGA	1 cut(s)	989
XceI	RCATGY	6 cut(s)	274, 286, 830, 892, 998, 1185
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1844
XmnI	GAANNNNTTC	1 cut(s)	1127
XspI	CTAG	5 cut(s)	315, 746, 990, 1007, 1539
Zsp2I	ATGCAT	2 cut(s)	1183, 1187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.